Experiment: Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RALBFv3_RS05590 and RALBFv3_RS05595 are separated by 73 nucleotides RALBFv3_RS05595 and RALBFv3_RS05600 are separated by 158 nucleotides RALBFv3_RS05600 and RALBFv3_RS05605 are separated by 276 nucleotides
RALBFv3_RS05590: RALBFv3_RS05590 - 4-hydroxybenzoate octaprenyltransferase, at 1,235,192 to 1,236,067
_RS05590
RALBFv3_RS05595: RALBFv3_RS05595 - DNA starvation/stationary phase protection protein, at 1,236,141 to 1,236,641
_RS05595
RALBFv3_RS05600: RALBFv3_RS05600 - hypothetical protein, at 1,236,800 to 1,237,042
_RS05600
RALBFv3_RS05605: RALBFv3_RS05605 - hydrogen peroxide-inducible genes activator, at 1,237,319 to 1,238,263
_RS05605
Position (kb) 1236
1237
1238 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 1236.142 kb on + strand at 1236.237 kb on + strand, within RALBFv3_RS05595 at 1236.237 kb on + strand, within RALBFv3_RS05595 at 1236.237 kb on + strand, within RALBFv3_RS05595 at 1236.238 kb on - strand, within RALBFv3_RS05595 at 1236.368 kb on - strand, within RALBFv3_RS05595 at 1236.442 kb on + strand, within RALBFv3_RS05595 at 1236.442 kb on + strand, within RALBFv3_RS05595 at 1236.443 kb on - strand, within RALBFv3_RS05595 at 1236.521 kb on - strand, within RALBFv3_RS05595 at 1236.529 kb on + strand, within RALBFv3_RS05595 at 1236.529 kb on + strand, within RALBFv3_RS05595 at 1236.530 kb on - strand, within RALBFv3_RS05595 at 1236.530 kb on - strand, within RALBFv3_RS05595 at 1236.530 kb on - strand, within RALBFv3_RS05595 at 1236.530 kb on - strand, within RALBFv3_RS05595 at 1236.754 kb on + strand at 1236.755 kb on - strand at 1236.791 kb on + strand at 1237.096 kb on + strand at 1237.313 kb on + strand at 1237.415 kb on - strand, within RALBFv3_RS05605 at 1237.476 kb on + strand, within RALBFv3_RS05605 at 1237.476 kb on + strand, within RALBFv3_RS05605 at 1237.476 kb on + strand, within RALBFv3_RS05605 at 1237.477 kb on - strand, within RALBFv3_RS05605 at 1237.477 kb on - strand, within RALBFv3_RS05605 at 1237.477 kb on - strand, within RALBFv3_RS05605 at 1237.477 kb on - strand, within RALBFv3_RS05605 at 1237.477 kb on - strand, within RALBFv3_RS05605 at 1237.919 kb on - strand, within RALBFv3_RS05605 at 1237.953 kb on + strand, within RALBFv3_RS05605 at 1237.953 kb on + strand, within RALBFv3_RS05605 at 1237.954 kb on - strand, within RALBFv3_RS05605 at 1237.954 kb on - strand, within RALBFv3_RS05605 at 1237.968 kb on + strand, within RALBFv3_RS05605 at 1237.968 kb on + strand, within RALBFv3_RS05605 at 1237.969 kb on - strand, within RALBFv3_RS05605
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted remove 1,236,142 + -0.9 1,236,237 + RALBFv3_RS05595 0.19 -0.1 1,236,237 + RALBFv3_RS05595 0.19 -1.6 1,236,237 + RALBFv3_RS05595 0.19 -0.4 1,236,238 - RALBFv3_RS05595 0.19 +1.0 1,236,368 - RALBFv3_RS05595 0.45 -1.1 1,236,442 + RALBFv3_RS05595 0.60 -2.0 1,236,442 + RALBFv3_RS05595 0.60 -1.5 1,236,443 - RALBFv3_RS05595 0.60 -1.5 1,236,521 - RALBFv3_RS05595 0.76 -1.3 1,236,529 + RALBFv3_RS05595 0.77 +0.1 1,236,529 + RALBFv3_RS05595 0.77 -0.3 1,236,530 - RALBFv3_RS05595 0.78 -0.6 1,236,530 - RALBFv3_RS05595 0.78 -0.7 1,236,530 - RALBFv3_RS05595 0.78 -1.7 1,236,530 - RALBFv3_RS05595 0.78 +0.6 1,236,754 + +0.2 1,236,755 - +3.0 1,236,791 + -0.9 1,237,096 + +0.6 1,237,313 + -1.8 1,237,415 - RALBFv3_RS05605 0.10 -0.4 1,237,476 + RALBFv3_RS05605 0.17 -1.7 1,237,476 + RALBFv3_RS05605 0.17 +0.3 1,237,476 + RALBFv3_RS05605 0.17 -1.6 1,237,477 - RALBFv3_RS05605 0.17 -0.3 1,237,477 - RALBFv3_RS05605 0.17 -1.1 1,237,477 - RALBFv3_RS05605 0.17 -0.5 1,237,477 - RALBFv3_RS05605 0.17 -0.0 1,237,477 - RALBFv3_RS05605 0.17 -1.7 1,237,919 - RALBFv3_RS05605 0.63 -1.5 1,237,953 + RALBFv3_RS05605 0.67 +0.7 1,237,953 + RALBFv3_RS05605 0.67 +1.5 1,237,954 - RALBFv3_RS05605 0.67 +0.7 1,237,954 - RALBFv3_RS05605 0.67 -1.0 1,237,968 + RALBFv3_RS05605 0.69 -0.8 1,237,968 + RALBFv3_RS05605 0.69 +1.4 1,237,969 - RALBFv3_RS05605 0.69 -0.4
Or see this region's nucleotide sequence