Strain Fitness in Ralstonia solanacearum IBSBF1503 around RALBFv3_RS04535

Experiment: Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRALBFv3_RS04530 and RALBFv3_RS04535 are separated by 130 nucleotidesRALBFv3_RS04535 and RALBFv3_RS04540 are separated by 82 nucleotidesRALBFv3_RS04540 and RALBFv3_RS04545 overlap by 4 nucleotidesRALBFv3_RS04545 and RALBFv3_RS04550 are separated by 25 nucleotides RALBFv3_RS04530: RALBFv3_RS04530 - LysR family transcriptional regulator, at 1,015,281 to 1,016,216 _RS04530 RALBFv3_RS04535: RALBFv3_RS04535 - dihydroxy-acid dehydratase, at 1,016,347 to 1,018,020 _RS04535 RALBFv3_RS04540: RALBFv3_RS04540 - DUF2486 domain-containing protein, at 1,018,103 to 1,018,531 _RS04540 RALBFv3_RS04545: RALBFv3_RS04545 - DNA polymerase III subunit chi, at 1,018,528 to 1,018,956 _RS04545 RALBFv3_RS04550: RALBFv3_RS04550 - leucyl aminopeptidase, at 1,018,982 to 1,020,502 _RS04550 Position (kb) 1016 1017 1018 1019Strain fitness (log2 ratio) -2 -1 0 1 2at 1015.620 kb on - strand, within RALBFv3_RS04530at 1015.620 kb on - strand, within RALBFv3_RS04530at 1016.067 kb on - strand, within RALBFv3_RS04530at 1016.194 kb on + strandat 1016.230 kb on - strandat 1016.234 kb on - strandat 1016.261 kb on - strandat 1018.883 kb on + strand, within RALBFv3_RS04545at 1018.910 kb on + strand, within RALBFv3_RS04545

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted
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1,015,620 - RALBFv3_RS04530 0.36 -0.1
1,015,620 - RALBFv3_RS04530 0.36 -1.1
1,016,067 - RALBFv3_RS04530 0.84 -1.4
1,016,194 + +0.0
1,016,230 - -0.1
1,016,234 - -0.8
1,016,261 - +2.7
1,018,883 + RALBFv3_RS04545 0.83 -2.2
1,018,910 + RALBFv3_RS04545 0.89 +1.1

Or see this region's nucleotide sequence