Strain Fitness in Ralstonia solanacearum IBSBF1503 around RALBFv3_RS01215

Experiment: Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRALBFv3_RS01210 and RALBFv3_RS01215 are separated by 1 nucleotidesRALBFv3_RS01215 and RALBFv3_RS01220 are separated by 70 nucleotides RALBFv3_RS01210: RALBFv3_RS01210 - ABC transporter permease, at 270,302 to 271,219 _RS01210 RALBFv3_RS01215: RALBFv3_RS01215 - ABC transporter ATP-binding protein, at 271,221 to 272,015 _RS01215 RALBFv3_RS01220: RALBFv3_RS01220 - porin, at 272,086 to 273,147 _RS01220 Position (kb) 271 272 273Strain fitness (log2 ratio) -1 0 1 2at 270.692 kb on + strand, within RALBFv3_RS01210at 270.692 kb on + strand, within RALBFv3_RS01210at 270.692 kb on + strand, within RALBFv3_RS01210at 270.900 kb on - strand, within RALBFv3_RS01210at 270.900 kb on - strand, within RALBFv3_RS01210at 271.943 kb on - strandat 272.351 kb on + strand, within RALBFv3_RS01220at 272.352 kb on - strandat 272.471 kb on + strand, within RALBFv3_RS01220at 272.471 kb on + strand, within RALBFv3_RS01220at 272.559 kb on - strand, within RALBFv3_RS01220at 272.660 kb on + strand, within RALBFv3_RS01220at 272.784 kb on - strand, within RALBFv3_RS01220

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted
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270,692 + RALBFv3_RS01210 0.42 +0.0
270,692 + RALBFv3_RS01210 0.42 -0.9
270,692 + RALBFv3_RS01210 0.42 -0.4
270,900 - RALBFv3_RS01210 0.65 +0.6
270,900 - RALBFv3_RS01210 0.65 -0.4
271,943 - -0.5
272,351 + RALBFv3_RS01220 0.25 -0.7
272,352 - +0.9
272,471 + RALBFv3_RS01220 0.36 +2.0
272,471 + RALBFv3_RS01220 0.36 -1.3
272,559 - RALBFv3_RS01220 0.45 +2.0
272,660 + RALBFv3_RS01220 0.54 +0.5
272,784 - RALBFv3_RS01220 0.66 -0.3

Or see this region's nucleotide sequence