Experiment: Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RALBFv3_RS00855 and RALBFv3_RS00860 are separated by 116 nucleotides RALBFv3_RS00860 and RALBFv3_RS00865 are separated by 271 nucleotides RALBFv3_RS00865 and RALBFv3_RS00870 are separated by 534 nucleotides
RALBFv3_RS00855: RALBFv3_RS00855 - hypothetical protein, at 191,298 to 193,619
_RS00855
RALBFv3_RS00860: RALBFv3_RS00860 - flavin reductase, at 193,736 to 194,326
_RS00860
RALBFv3_RS00865: RALBFv3_RS00865 - hypothetical protein, at 194,598 to 195,161
_RS00865
RALBFv3_RS00870: RALBFv3_RS00870 - DUF1794 domain-containing protein, at 195,696 to 196,313
_RS00870
Position (kb) 194
195
196 Strain fitness (log2 ratio) -1
0
1 at 193.745 kb on + strand at 193.746 kb on - strand at 193.804 kb on - strand, within RALBFv3_RS00860 at 194.219 kb on + strand, within RALBFv3_RS00860 at 194.220 kb on - strand, within RALBFv3_RS00860 at 194.256 kb on - strand, within RALBFv3_RS00860 at 194.484 kb on - strand at 194.590 kb on - strand at 194.599 kb on + strand at 194.600 kb on - strand at 194.621 kb on + strand at 194.665 kb on + strand, within RALBFv3_RS00865 at 194.668 kb on + strand, within RALBFv3_RS00865 at 194.927 kb on - strand, within RALBFv3_RS00865 at 195.190 kb on + strand at 195.191 kb on - strand at 195.394 kb on - strand at 195.394 kb on - strand at 195.563 kb on - strand at 195.697 kb on + strand at 195.781 kb on + strand, within RALBFv3_RS00870 at 196.125 kb on + strand, within RALBFv3_RS00870
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted remove 193,745 + -0.7 193,746 - -1.3 193,804 - RALBFv3_RS00860 0.12 -1.4 194,219 + RALBFv3_RS00860 0.82 +0.2 194,220 - RALBFv3_RS00860 0.82 -0.7 194,256 - RALBFv3_RS00860 0.88 +1.1 194,484 - +0.7 194,590 - +0.9 194,599 + -1.7 194,600 - -0.4 194,621 + +0.9 194,665 + RALBFv3_RS00865 0.12 -0.4 194,668 + RALBFv3_RS00865 0.12 -0.2 194,927 - RALBFv3_RS00865 0.58 -0.4 195,190 + -1.2 195,191 - +1.0 195,394 - +0.5 195,394 - +0.5 195,563 - -0.3 195,697 + -0.4 195,781 + RALBFv3_RS00870 0.14 -1.4 196,125 + RALBFv3_RS00870 0.69 +1.2
Or see this region's nucleotide sequence