Experiment: Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanol_timecourse3; 5 generations
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS03135 and MMP_RS03140 are separated by 193 nucleotides MMP_RS03140 and MMP_RS03145 are separated by 17 nucleotides MMP_RS03145 and MMP_RS03150 are separated by 156 nucleotides
MMP_RS03135: MMP_RS03135 - O-phosphoseryl-tRNA(Sec) selenium transferase, at 590,364 to 591,674
_RS03135
MMP_RS03140: MMP_RS03140 - hypothetical protein, at 591,868 to 593,298
_RS03140
MMP_RS03145: MMP_RS03145 - fibrillarin-like rRNA/tRNA 2'-O-methyltransferase, at 593,316 to 594,008
_RS03145
MMP_RS03150: MMP_RS03150 - phosphoglycerate mutase, at 594,165 to 595,451
_RS03150
Position (kb) 591
592
593
594 Strain fitness (log2 ratio) -2
-1
0
1 at 590.905 kb on - strand at 590.983 kb on + strand at 591.114 kb on - strand at 591.321 kb on - strand at 591.340 kb on - strand at 591.341 kb on + strand at 591.341 kb on + strand at 591.347 kb on - strand at 591.446 kb on + strand at 591.531 kb on - strand at 591.715 kb on - strand at 591.750 kb on - strand at 591.779 kb on - strand at 591.782 kb on - strand at 591.783 kb on + strand at 591.802 kb on - strand at 591.824 kb on - strand at 591.831 kb on + strand at 591.956 kb on + strand at 591.997 kb on - strand at 591.998 kb on + strand at 592.086 kb on - strand, within MMP_RS03140 at 592.249 kb on + strand, within MMP_RS03140 at 592.256 kb on - strand, within MMP_RS03140 at 592.256 kb on - strand, within MMP_RS03140 at 592.338 kb on + strand, within MMP_RS03140 at 592.339 kb on - strand, within MMP_RS03140 at 592.340 kb on + strand, within MMP_RS03140 at 592.377 kb on - strand, within MMP_RS03140 at 592.381 kb on - strand, within MMP_RS03140 at 592.382 kb on + strand, within MMP_RS03140 at 592.420 kb on - strand, within MMP_RS03140 at 592.423 kb on + strand, within MMP_RS03140 at 592.554 kb on + strand, within MMP_RS03140 at 592.564 kb on - strand, within MMP_RS03140 at 592.565 kb on + strand, within MMP_RS03140 at 592.571 kb on + strand, within MMP_RS03140 at 592.667 kb on - strand, within MMP_RS03140 at 592.757 kb on - strand, within MMP_RS03140 at 593.313 kb on - strand at 593.313 kb on - strand at 593.354 kb on + strand at 593.354 kb on + strand at 593.354 kb on + strand at 593.455 kb on - strand, within MMP_RS03145 at 593.455 kb on - strand, within MMP_RS03145 at 593.462 kb on - strand, within MMP_RS03145 at 593.504 kb on - strand, within MMP_RS03145 at 593.507 kb on + strand, within MMP_RS03145 at 593.554 kb on + strand, within MMP_RS03145 at 593.597 kb on - strand, within MMP_RS03145 at 594.006 kb on - strand at 594.007 kb on + strand at 594.016 kb on - strand at 594.016 kb on - strand at 594.017 kb on + strand at 594.023 kb on - strand at 594.059 kb on - strand at 594.068 kb on - strand at 594.069 kb on + strand at 594.069 kb on + strand at 594.071 kb on + strand at 594.091 kb on + strand at 594.103 kb on + strand at 594.121 kb on + strand at 594.135 kb on - strand at 594.144 kb on - strand at 594.148 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanol_timecourse3; 5 generations remove 590,905 - -2.4 590,983 + -2.2 591,114 - -1.2 591,321 - -1.5 591,340 - -2.2 591,341 + -1.7 591,341 + -1.4 591,347 - -1.8 591,446 + -1.1 591,531 - -1.0 591,715 - -0.3 591,750 - +0.0 591,779 - -0.3 591,782 - +0.0 591,783 + +1.2 591,802 - -0.6 591,824 - -0.7 591,831 + -0.8 591,956 + -2.2 591,997 - -0.8 591,998 + -1.0 592,086 - MMP_RS03140 0.15 -0.5 592,249 + MMP_RS03140 0.27 -0.4 592,256 - MMP_RS03140 0.27 -0.5 592,256 - MMP_RS03140 0.27 -0.5 592,338 + MMP_RS03140 0.33 -0.8 592,339 - MMP_RS03140 0.33 -0.5 592,340 + MMP_RS03140 0.33 -0.6 592,377 - MMP_RS03140 0.36 -0.5 592,381 - MMP_RS03140 0.36 -0.5 592,382 + MMP_RS03140 0.36 -1.3 592,420 - MMP_RS03140 0.39 -1.2 592,423 + MMP_RS03140 0.39 -0.5 592,554 + MMP_RS03140 0.48 -0.5 592,564 - MMP_RS03140 0.49 -1.9 592,565 + MMP_RS03140 0.49 -1.0 592,571 + MMP_RS03140 0.49 -0.9 592,667 - MMP_RS03140 0.56 -0.8 592,757 - MMP_RS03140 0.62 -0.6 593,313 - -0.8 593,313 - -0.6 593,354 + -0.7 593,354 + -0.4 593,354 + -0.6 593,455 - MMP_RS03145 0.20 -0.7 593,455 - MMP_RS03145 0.20 -0.9 593,462 - MMP_RS03145 0.21 -0.7 593,504 - MMP_RS03145 0.27 -0.6 593,507 + MMP_RS03145 0.28 -1.0 593,554 + MMP_RS03145 0.34 -0.7 593,597 - MMP_RS03145 0.41 -1.7 594,006 - +0.2 594,007 + +0.0 594,016 - +0.0 594,016 - -0.2 594,017 + -0.2 594,023 - -0.1 594,059 - +0.2 594,068 - +0.6 594,069 + -0.1 594,069 + +0.1 594,071 + +0.4 594,091 + +0.0 594,103 + +0.1 594,121 + -0.2 594,135 - +0.4 594,144 - -0.4 594,148 + -0.2
Or see this region's nucleotide sequence