Experiment: Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanol_timecourse3; 5 generations
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS01780 and MMP_RS01785 are separated by 70 nucleotides MMP_RS01785 and MMP_RS01790 are separated by 47 nucleotides MMP_RS01790 and MMP_RS01795 are separated by 16 nucleotides MMP_RS01795 and MMP_RS01800 are separated by 28 nucleotides
MMP_RS01780: MMP_RS01780 - TrmJ/YjtD family RNA methyltransferase, at 331,555 to 332,259
_RS01780
MMP_RS01785: MMP_RS01785 - hypothetical protein, at 332,330 to 332,743
_RS01785
MMP_RS01790: MMP_RS01790 - restriction endonuclease, at 332,791 to 333,198
_RS01790
MMP_RS01795: MMP_RS01795 - methanogenesis marker 6 protein, at 333,215 to 333,661
_RS01795
MMP_RS01800: MMP_RS01800 - TIGR00303 family protein, at 333,690 to 334,742
_RS01800
Position (kb) 333
334 Strain fitness (log2 ratio) -2
-1
0
1 at 332.228 kb on - strand at 332.245 kb on + strand at 332.258 kb on + strand at 332.294 kb on + strand at 332.296 kb on - strand at 332.336 kb on + strand at 332.337 kb on - strand at 332.372 kb on - strand, within MMP_RS01785 at 332.547 kb on - strand, within MMP_RS01785 at 332.547 kb on - strand, within MMP_RS01785 at 332.581 kb on - strand, within MMP_RS01785 at 332.674 kb on + strand, within MMP_RS01785 at 332.696 kb on - strand, within MMP_RS01785 at 332.696 kb on - strand, within MMP_RS01785 at 332.697 kb on + strand, within MMP_RS01785 at 332.697 kb on + strand, within MMP_RS01785 at 332.700 kb on - strand, within MMP_RS01785 at 332.700 kb on - strand, within MMP_RS01785 at 332.701 kb on + strand, within MMP_RS01785 at 332.727 kb on - strand at 332.731 kb on - strand at 332.779 kb on + strand at 332.779 kb on + strand at 332.788 kb on + strand at 332.789 kb on - strand at 332.789 kb on - strand at 332.790 kb on + strand at 332.790 kb on + strand at 332.792 kb on - strand at 333.021 kb on + strand, within MMP_RS01790 at 333.023 kb on - strand, within MMP_RS01790 at 333.023 kb on - strand, within MMP_RS01790 at 333.024 kb on + strand, within MMP_RS01790 at 333.045 kb on - strand, within MMP_RS01790 at 333.089 kb on + strand, within MMP_RS01790 at 333.154 kb on - strand, within MMP_RS01790 at 333.189 kb on - strand at 333.213 kb on + strand at 333.461 kb on + strand, within MMP_RS01795 at 333.467 kb on + strand, within MMP_RS01795 at 333.500 kb on - strand, within MMP_RS01795 at 333.672 kb on - strand at 333.736 kb on - strand at 333.829 kb on - strand, within MMP_RS01800 at 334.047 kb on - strand, within MMP_RS01800 at 334.048 kb on + strand, within MMP_RS01800 at 334.059 kb on + strand, within MMP_RS01800 at 334.222 kb on + strand, within MMP_RS01800 at 334.537 kb on + strand, within MMP_RS01800 at 334.569 kb on - strand, within MMP_RS01800 at 334.572 kb on + strand, within MMP_RS01800 at 334.576 kb on + strand, within MMP_RS01800 at 334.603 kb on - strand, within MMP_RS01800
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanol_timecourse3; 5 generations remove 332,228 - +0.2 332,245 + +0.1 332,258 + +0.1 332,294 + +0.0 332,296 - +0.4 332,336 + -0.3 332,337 - +0.1 332,372 - MMP_RS01785 0.10 +0.4 332,547 - MMP_RS01785 0.52 +1.0 332,547 - MMP_RS01785 0.52 +0.2 332,581 - MMP_RS01785 0.61 +0.1 332,674 + MMP_RS01785 0.83 +0.5 332,696 - MMP_RS01785 0.88 -0.3 332,696 - MMP_RS01785 0.88 +0.4 332,697 + MMP_RS01785 0.89 +0.5 332,697 + MMP_RS01785 0.89 +0.7 332,700 - MMP_RS01785 0.89 -0.1 332,700 - MMP_RS01785 0.89 +0.3 332,701 + MMP_RS01785 0.90 +0.2 332,727 - +0.3 332,731 - +0.9 332,779 + +0.3 332,779 + -0.2 332,788 + -0.1 332,789 - +0.3 332,789 - +0.1 332,790 + -0.3 332,790 + +0.2 332,792 - +0.1 333,021 + MMP_RS01790 0.56 +0.5 333,023 - MMP_RS01790 0.57 +0.2 333,023 - MMP_RS01790 0.57 -0.2 333,024 + MMP_RS01790 0.57 -0.0 333,045 - MMP_RS01790 0.62 +0.1 333,089 + MMP_RS01790 0.73 +0.1 333,154 - MMP_RS01790 0.89 -0.0 333,189 - +0.1 333,213 + -0.0 333,461 + MMP_RS01795 0.55 -0.9 333,467 + MMP_RS01795 0.56 -0.9 333,500 - MMP_RS01795 0.64 -1.0 333,672 - -0.3 333,736 - -0.9 333,829 - MMP_RS01800 0.13 -0.1 334,047 - MMP_RS01800 0.34 -0.1 334,048 + MMP_RS01800 0.34 -1.0 334,059 + MMP_RS01800 0.35 -2.0 334,222 + MMP_RS01800 0.51 -0.7 334,537 + MMP_RS01800 0.80 -1.2 334,569 - MMP_RS01800 0.83 -0.8 334,572 + MMP_RS01800 0.84 -1.7 334,576 + MMP_RS01800 0.84 -1.9 334,603 - MMP_RS01800 0.87 -1.5
Or see this region's nucleotide sequence