Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS15690

Experiment: R2A with Nickel (II) chloride 0.3125 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Nickel (II) chloride 0.3125 mM
3,457,902	+		LRK54_RS15685	0.65	-1.4
3,457,902	+		LRK54_RS15685	0.65	+0.4
3,457,902	+		LRK54_RS15685	0.65	-0.7
3,457,902	+		LRK54_RS15685	0.65	-0.1
3,457,902	+		LRK54_RS15685	0.65	-0.4
3,457,903	-		LRK54_RS15685	0.65	+1.3
3,457,903	-		LRK54_RS15685	0.65	-0.7
3,457,903	-		LRK54_RS15685	0.65	+0.9
3,457,903	-		LRK54_RS15685	0.65	+0.5
3,457,903	-		LRK54_RS15685	0.65	-0.1
3,457,903	-		LRK54_RS15685	0.65	+1.4
3,458,073	+		LRK54_RS15685	0.75	+0.1
3,458,073	+		LRK54_RS15685	0.75	+0.0
3,458,073	+		LRK54_RS15685	0.75	+0.6
3,458,073	+		LRK54_RS15685	0.75	-1.5
3,458,074	-		LRK54_RS15685	0.75	-0.3
3,458,196	+		LRK54_RS15685	0.82	+0.4
3,458,196	+		LRK54_RS15685	0.82	+0.3
3,458,196	+		LRK54_RS15685	0.82	+2.0
3,458,196	+		LRK54_RS15685	0.82	-1.1
3,458,196	+		LRK54_RS15685	0.82	+0.0
3,458,197	-		LRK54_RS15685	0.82	-0.6
3,458,197	-		LRK54_RS15685	0.82	-0.2
3,458,310	+		LRK54_RS15685	0.88	+0.6
3,458,310	+		LRK54_RS15685	0.88	+1.7
3,458,310	+		LRK54_RS15685	0.88	+0.7
3,458,310	+		LRK54_RS15685	0.88	+1.0
3,458,310	+		LRK54_RS15685	0.88	-0.3
3,458,310	+		LRK54_RS15685	0.88	+0.1
3,458,310	+		LRK54_RS15685	0.88	+0.7
3,458,311	-		LRK54_RS15685	0.88	-0.1
3,458,311	-		LRK54_RS15685	0.88	+1.8
3,458,311	-		LRK54_RS15685	0.88	-0.2
3,458,311	-		LRK54_RS15685	0.88	+2.7
3,458,311	-		LRK54_RS15685	0.88	+1.1
3,458,311	-		LRK54_RS15685	0.88	-0.1
3,458,311	-		LRK54_RS15685	0.88	-0.5
3,458,311	-		LRK54_RS15685	0.88	-0.4
3,458,407	-				-0.8
3,458,538	+				+1.3
3,458,538	+				+0.6
3,458,538	+				-1.2
3,458,539	-				-1.3
3,458,539	-				+2.6
3,458,539	-				+0.8
3,458,539	-				-0.5
3,458,539	-				-2.4
3,458,539	-				-0.3
3,458,539	-				-1.6
3,458,683	-				+1.0
3,458,936	+		LRK54_RS15690	0.85	+0.3
3,458,936	+		LRK54_RS15690	0.85	-0.2
3,458,936	+		LRK54_RS15690	0.85	+0.6
3,458,936	+		LRK54_RS15690	0.85	+0.1
3,458,936	+		LRK54_RS15690	0.85	+1.0
3,458,936	+		LRK54_RS15690	0.85	-0.5
3,458,936	+		LRK54_RS15690	0.85	-0.5
3,458,936	+		LRK54_RS15690	0.85	-0.6
3,458,936	+		LRK54_RS15690	0.85	-0.4
3,458,936	+		LRK54_RS15690	0.85	+0.8
3,458,936	+		LRK54_RS15690	0.85	-2.2
3,458,936	+		LRK54_RS15690	0.85	-1.4
3,458,936	+		LRK54_RS15690	0.85	-1.5
3,458,936	+		LRK54_RS15690	0.85	-0.0
3,458,936	+		LRK54_RS15690	0.85	-0.7
3,458,937	-		LRK54_RS15690	0.86	-1.0
3,458,937	-		LRK54_RS15690	0.86	-0.7
3,458,937	-		LRK54_RS15690	0.86	-0.4
3,458,937	-		LRK54_RS15690	0.86	+3.0
3,458,937	-		LRK54_RS15690	0.86	-0.2
3,458,937	-		LRK54_RS15690	0.86	+0.0
3,458,937	-		LRK54_RS15690	0.86	+1.5
3,458,937	-		LRK54_RS15690	0.86	-0.8
3,458,937	-		LRK54_RS15690	0.86	-1.8
3,458,937	-		LRK54_RS15690	0.86	-1.1
3,458,993	+				-2.2
3,458,993	+				+0.1
3,458,993	+				+1.4
3,458,993	+				+1.8
3,458,993	+				+1.2
3,458,993	+				+0.6
3,458,993	+				-0.9
3,458,993	+				-0.3
3,458,994	-				-1.9
3,458,994	-				-1.8
3,458,994	-				-1.3
3,458,994	-				+0.8
3,458,994	-				+0.7
3,459,092	+				-0.9
3,459,092	+				+1.3
3,459,092	+				-1.4
3,459,142	+				-1.1
3,459,142	+				+0.2
3,459,142	+				+0.6
3,459,142	+				-0.7
3,459,142	+				-1.7
3,459,142	+				+0.7
3,459,142	+				-1.4
3,459,142	+				-0.1
3,459,142	+				-0.8
3,459,142	+				-0.2
3,459,142	+				+0.5
3,459,142	+				+2.0
3,459,142	+				+0.5
3,459,142	+				+2.0
3,459,142	+				+1.1
3,459,142	+				-2.5
3,459,142	+				+1.8
3,459,142	+				-1.2
3,459,142	+				-1.5
3,459,143	-				+0.7
3,459,143	-				-1.6
3,459,143	-				-1.5
3,459,143	-				-1.2
3,459,143	-				+1.1
3,459,143	-				+1.4
3,459,143	-				+0.1
3,459,143	-				-1.8
3,459,143	-				+0.4
3,459,143	-				+1.2
3,459,143	-				-0.7
3,459,143	-				+0.4
3,459,143	-				+0.1
3,459,143	-				-0.4
3,459,143	-				-0.7
3,459,143	-				+1.0
3,459,143	-				-2.2
3,459,143	-				-1.7
3,459,143	-				+0.0
3,459,143	-				+0.0
3,459,143	-				+0.1
3,459,640	+		LRK54_RS15695	0.83	+0.2
3,459,640	+		LRK54_RS15695	0.83	+0.8
3,459,640	+		LRK54_RS15695	0.83	+0.2
3,459,640	+		LRK54_RS15695	0.83	-2.3
3,459,640	+		LRK54_RS15695	0.83	+0.4
3,459,640	+		LRK54_RS15695	0.83	-0.3
3,459,640	+		LRK54_RS15695	0.83	+1.2
3,459,640	+		LRK54_RS15695	0.83	+0.2
3,459,640	+		LRK54_RS15695	0.83	-0.8
3,459,640	+		LRK54_RS15695	0.83	-0.0
3,459,640	+		LRK54_RS15695	0.83	-1.4
3,459,641	-		LRK54_RS15695	0.83	-1.6
3,459,641	-		LRK54_RS15695	0.83	-2.5
3,459,641	-		LRK54_RS15695	0.83	+0.4
3,459,641	-		LRK54_RS15695	0.83	+0.3
3,459,641	-		LRK54_RS15695	0.83	-0.5
3,459,641	-		LRK54_RS15695	0.83	+0.1
3,459,641	-		LRK54_RS15695	0.83	+0.1
3,459,641	-		LRK54_RS15695	0.83	-1.7
3,459,707	-				-0.9
3,459,852	+				-3.5
3,459,852	+				-1.0
3,459,852	+				+1.1
3,459,852	+				+1.1
3,459,852	+				-0.6
3,459,852	+				-0.1
3,459,852	+				-1.0
3,459,852	+				+1.3
3,459,852	+				-2.5
3,459,852	+				+0.7
3,459,852	+				-0.8
3,459,852	+				+1.3
3,459,852	+				+0.1
3,459,852	+				+0.5
3,459,852	+				-2.7
3,459,852	+				-1.7
3,459,852	+				-1.2
3,459,852	+				-1.4
3,459,852	+				+1.2
3,459,852	+				-2.2
3,459,852	+				-0.3
3,459,852	+				-0.8
3,459,852	+				+0.4
3,459,853	-				-1.3
3,459,853	-				-0.8
3,459,853	-				-0.5
3,459,853	-				+0.4
3,459,853	-				+0.4
3,459,853	-				+0.2
3,459,853	-				-1.2
3,459,853	-				-1.0
3,459,853	-				+0.5
3,459,853	-				+0.8
3,459,853	-				-2.0
3,459,853	-				-1.8
3,459,853	-				+0.9
3,459,853	-				-1.2
3,459,853	-				-1.5
3,459,853	-				-0.9
3,459,853	-				-1.8
3,459,853	-				-0.6
3,459,853	-				-1.7
3,459,853	-				-0.1
3,459,853	-				-0.4
3,459,853	-				-0.7
3,459,853	-				-1.5
3,459,853	-				-1.1
3,459,853	-				-1.7
3,459,853	-				+0.2
3,459,894	+		LRK54_RS15700	0.13	-0.3
3,459,894	+		LRK54_RS15700	0.13	+0.7
3,459,894	+		LRK54_RS15700	0.13	-0.5
3,459,894	+		LRK54_RS15700	0.13	+1.3
3,459,895	-		LRK54_RS15700	0.13	-1.0
3,459,895	-		LRK54_RS15700	0.13	-0.1
3,459,895	-		LRK54_RS15700	0.13	+0.4
3,459,895	-		LRK54_RS15700	0.13	-1.3
3,459,957	+		LRK54_RS15700	0.19	+0.5
3,459,957	+		LRK54_RS15700	0.19	-1.6
3,459,957	+		LRK54_RS15700	0.19	-0.1
3,459,957	+		LRK54_RS15700	0.19	-1.6
3,459,957	+		LRK54_RS15700	0.19	-1.2
3,459,957	+		LRK54_RS15700	0.19	-2.8
3,459,957	+		LRK54_RS15700	0.19	+0.5
3,459,958	-		LRK54_RS15700	0.19	-0.2
3,459,958	-		LRK54_RS15700	0.19	-1.7
3,459,958	-		LRK54_RS15700	0.19	-1.1
3,459,958	-		LRK54_RS15700	0.19	+0.1
3,459,958	-		LRK54_RS15700	0.19	+1.2
3,459,958	-		LRK54_RS15700	0.19	-0.6
3,459,958	-		LRK54_RS15700	0.19	-0.5