Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS15050

Experiment: R2A with Nickel (II) chloride 0.3125 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Nickel (II) chloride 0.3125 mM
3,326,361	+				+0.9
3,326,361	+				-0.3
3,326,361	+				+0.5
3,326,361	+				-0.1
3,326,361	+				-0.0
3,326,361	+				-0.2
3,326,361	+				-1.0
3,326,361	+				-0.8
3,326,361	+				-0.6
3,326,361	+				-2.1
3,326,361	+				-2.6
3,326,361	+				+1.5
3,326,361	+				-0.2
3,326,361	+				-0.6
3,326,361	+				+0.8
3,326,361	+				-0.1
3,326,361	+				-1.6
3,326,362	-				-2.1
3,326,362	-				-0.1
3,326,362	-				+0.4
3,326,362	-				+0.9
3,326,362	-				-1.0
3,326,362	-				-1.6
3,326,362	-				+0.4
3,326,362	-				+1.5
3,326,362	-				-4.3
3,326,363	-				-2.0
3,326,421	+				+1.9
3,326,421	+				+0.2
3,326,421	+				+1.1
3,326,421	+				+0.8
3,326,421	+				+0.7
3,326,421	+				+0.9
3,326,421	+				+0.7
3,326,421	+				-1.5
3,326,421	+				-1.1
3,326,422	-				-1.1
3,326,422	-				+1.4
3,326,422	-				-0.8
3,326,422	-				+1.2
3,326,422	-				+0.2
3,326,422	-				+0.1
3,326,422	-				-0.2
3,326,422	-				-0.3
3,326,422	-				-1.3
3,326,422	-				+0.9
3,326,422	-				-0.8
3,326,422	-				+0.8
3,326,477	+				-0.8
3,326,477	+				-2.2
3,326,477	+				-0.9
3,326,477	+				-1.3
3,326,477	+				-1.4
3,326,477	+				-1.9
3,326,477	+				-1.2
3,326,477	+				-1.2
3,326,477	+				-4.4
3,326,477	+				-1.4
3,326,477	+				-1.7
3,326,477	+				-2.3
3,326,477	+				-0.7
3,326,477	+				-2.4
3,326,478	-				-1.8
3,326,478	-				-1.4
3,326,478	-				-2.4
3,326,478	-				-3.5
3,326,478	-				-1.1
3,326,478	-				+1.6
3,326,478	-				-3.3
3,326,478	-				-2.0
3,326,478	-				-1.6
3,326,478	-				-1.7
3,326,478	-				+0.3
3,326,478	-				-2.4
3,326,478	-				-1.0
3,326,478	-				-5.0
3,326,478	-				-2.4
3,326,478	-				-1.1
3,326,478	-				-3.2
3,326,490	+		LRK54_RS15040	0.12	-1.8
3,326,490	+		LRK54_RS15040	0.12	-2.2
3,326,490	+		LRK54_RS15040	0.12	-0.6
3,326,490	+		LRK54_RS15040	0.12	-2.9
3,326,490	+		LRK54_RS15040	0.12	+0.1
3,326,491	-		LRK54_RS15040	0.12	-1.1
3,326,491	-		LRK54_RS15040	0.12	-0.5
3,326,491	-		LRK54_RS15040	0.12	-2.3
3,326,498	+		LRK54_RS15040	0.15	+0.4
3,326,498	+		LRK54_RS15040	0.15	-1.7
3,326,498	+		LRK54_RS15040	0.15	-2.0
3,326,498	+		LRK54_RS15040	0.15	-1.6
3,326,828	+		LRK54_RS15045	0.28	+0.9
3,326,830	+		LRK54_RS15045	0.29	-0.3
3,326,830	+		LRK54_RS15045	0.29	+0.7
3,326,830	+		LRK54_RS15045	0.29	-0.3
3,326,830	+		LRK54_RS15045	0.29	+2.6
3,326,830	+		LRK54_RS15045	0.29	+0.6
3,326,830	+		LRK54_RS15045	0.29	+0.6
3,326,830	+		LRK54_RS15045	0.29	+0.3
3,326,830	+		LRK54_RS15045	0.29	+1.2
3,326,830	+		LRK54_RS15045	0.29	-0.3
3,326,830	+		LRK54_RS15045	0.29	-2.7
3,326,830	+		LRK54_RS15045	0.29	+0.5
3,326,830	+		LRK54_RS15045	0.29	-1.1
3,326,830	+		LRK54_RS15045	0.29	-1.0
3,326,830	+		LRK54_RS15045	0.29	-0.8
3,326,830	+		LRK54_RS15045	0.29	-0.5
3,326,830	+		LRK54_RS15045	0.29	+0.7
3,326,830	+		LRK54_RS15045	0.29	+2.2
3,326,830	+		LRK54_RS15045	0.29	-0.1
3,326,830	+		LRK54_RS15045	0.29	-0.8
3,326,830	+		LRK54_RS15045	0.29	-0.4
3,326,830	+		LRK54_RS15045	0.29	+0.6
3,326,830	+		LRK54_RS15045	0.29	-0.0
3,326,830	+		LRK54_RS15045	0.29	-1.4
3,326,830	+		LRK54_RS15045	0.29	+0.2
3,326,830	+		LRK54_RS15045	0.29	-0.8
3,326,830	+		LRK54_RS15045	0.29	+0.3
3,326,830	+		LRK54_RS15045	0.29	-0.4
3,326,830	+		LRK54_RS15045	0.29	-0.9
3,326,830	+		LRK54_RS15045	0.29	+0.9
3,326,830	+		LRK54_RS15045	0.29	-0.2
3,326,830	+		LRK54_RS15045	0.29	+1.3
3,326,830	+		LRK54_RS15045	0.29	-1.5
3,326,830	+		LRK54_RS15045	0.29	-1.4
3,326,831	-		LRK54_RS15045	0.29	-1.2
3,326,831	-		LRK54_RS15045	0.29	+0.1
3,326,831	-		LRK54_RS15045	0.29	+1.2
3,326,831	-		LRK54_RS15045	0.29	+0.9
3,326,831	-		LRK54_RS15045	0.29	+1.3
3,326,831	-		LRK54_RS15045	0.29	-0.6
3,326,831	-		LRK54_RS15045	0.29	-1.9
3,326,831	-		LRK54_RS15045	0.29	+2.0
3,326,831	-		LRK54_RS15045	0.29	+0.9
3,326,831	-		LRK54_RS15045	0.29	+1.2
3,326,831	-		LRK54_RS15045	0.29	+0.2
3,326,831	-		LRK54_RS15045	0.29	+1.0
3,326,831	-		LRK54_RS15045	0.29	-1.4
3,326,831	-		LRK54_RS15045	0.29	+1.5
3,326,831	-		LRK54_RS15045	0.29	+0.7
3,326,831	-		LRK54_RS15045	0.29	+1.4
3,326,831	-		LRK54_RS15045	0.29	-0.6
3,326,831	-		LRK54_RS15045	0.29	+0.2
3,326,831	-		LRK54_RS15045	0.29	-0.4
3,326,831	-		LRK54_RS15045	0.29	-1.8
3,326,831	-		LRK54_RS15045	0.29	+1.2
3,326,831	-		LRK54_RS15045	0.29	-0.8
3,326,831	-		LRK54_RS15045	0.29	-1.0
3,326,831	-		LRK54_RS15045	0.29	+0.6
3,326,831	-		LRK54_RS15045	0.29	-0.8
3,326,831	-		LRK54_RS15045	0.29	-0.1
3,326,831	-		LRK54_RS15045	0.29	-1.5
3,326,831	-		LRK54_RS15045	0.29	-1.2
3,326,831	-		LRK54_RS15045	0.29	-0.7
3,326,917	+		LRK54_RS15045	0.51	+1.7
3,326,917	+		LRK54_RS15045	0.51	+2.1
3,326,917	+		LRK54_RS15045	0.51	+1.3
3,326,917	+		LRK54_RS15045	0.51	+1.1
3,326,917	+		LRK54_RS15045	0.51	-0.8
3,326,917	+		LRK54_RS15045	0.51	+0.4
3,326,917	+		LRK54_RS15045	0.51	+0.8
3,326,917	+		LRK54_RS15045	0.51	-1.4
3,326,918	-		LRK54_RS15045	0.51	+2.0
3,326,918	-		LRK54_RS15045	0.51	+0.1
3,326,918	-		LRK54_RS15045	0.51	-1.7
3,326,918	-		LRK54_RS15045	0.51	-1.5
3,326,918	-		LRK54_RS15045	0.51	-1.4
3,326,918	-		LRK54_RS15045	0.51	-3.5
3,326,993	+		LRK54_RS15045	0.71	-0.3
3,326,993	+		LRK54_RS15045	0.71	-1.0
3,326,993	+		LRK54_RS15045	0.71	-0.4
3,326,994	-		LRK54_RS15045	0.71	+1.2
3,326,994	-		LRK54_RS15045	0.71	-0.7
3,327,103	+				-0.3
3,327,103	+				+1.3
3,327,104	-				-0.5
3,327,104	-				+0.2
3,327,146	+				+0.1
3,327,147	-				-0.0
3,327,201	+				+1.4
3,328,396	+				-1.2
3,328,396	+				+0.3
3,328,397	-				-2.3
3,328,397	-				-0.2
3,328,430	+		LRK54_RS15055	0.12	-0.4
3,328,430	+		LRK54_RS15055	0.12	-0.2
3,328,513	+		LRK54_RS15055	0.30	-1.6
3,328,513	+		LRK54_RS15055	0.30	+2.1
3,328,514	-		LRK54_RS15055	0.30	-0.5
3,328,514	-		LRK54_RS15055	0.30	-3.7
3,328,514	-		LRK54_RS15055	0.30	-1.1
3,328,514	-		LRK54_RS15055	0.30	-1.5
3,328,597	+		LRK54_RS15055	0.48	-0.4
3,328,597	+		LRK54_RS15055	0.48	+1.2
3,328,597	+		LRK54_RS15055	0.48	-1.1
3,328,597	+		LRK54_RS15055	0.48	+1.2
3,328,597	+		LRK54_RS15055	0.48	+0.1
3,328,597	+		LRK54_RS15055	0.48	-0.3
3,328,597	+		LRK54_RS15055	0.48	+0.5
3,328,597	+		LRK54_RS15055	0.48	+2.7
3,328,597	+		LRK54_RS15055	0.48	-3.3
3,328,597	+		LRK54_RS15055	0.48	+0.4
3,328,597	+		LRK54_RS15055	0.48	-0.9
3,328,597	+		LRK54_RS15055	0.48	-2.2
3,328,597	+		LRK54_RS15055	0.48	-0.1
3,328,597	+		LRK54_RS15055	0.48	-0.5
3,328,597	+		LRK54_RS15055	0.48	+1.8
3,328,598	-		LRK54_RS15055	0.48	+0.9
3,328,598	-		LRK54_RS15055	0.48	-1.1
3,328,598	-		LRK54_RS15055	0.48	-0.8
3,328,598	-		LRK54_RS15055	0.48	+0.5
3,328,630	+		LRK54_RS15055	0.55	+0.2
3,328,630	+		LRK54_RS15055	0.55	-0.1
3,328,630	+		LRK54_RS15055	0.55	-2.0
3,328,630	+		LRK54_RS15055	0.55	-2.2
3,328,630	+		LRK54_RS15055	0.55	+0.3
3,328,630	+		LRK54_RS15055	0.55	+0.2
3,328,630	+		LRK54_RS15055	0.55	-0.9
3,328,630	+		LRK54_RS15055	0.55	+0.5
3,328,631	-		LRK54_RS15055	0.56	+0.7
3,328,631	-		LRK54_RS15055	0.56	+0.1
3,328,631	-		LRK54_RS15055	0.56	+0.3
3,328,631	-		LRK54_RS15055	0.56	-0.2
3,328,631	-		LRK54_RS15055	0.56	-1.2
3,328,631	-		LRK54_RS15055	0.56	+1.2
3,328,631	-		LRK54_RS15055	0.56	+0.2
3,328,631	-		LRK54_RS15055	0.56	-1.6
3,328,631	-		LRK54_RS15055	0.56	-0.3
3,328,631	-		LRK54_RS15055	0.56	-0.4
3,328,690	+		LRK54_RS15055	0.69	+0.6
3,328,690	+		LRK54_RS15055	0.69	-1.7
3,328,690	+		LRK54_RS15055	0.69	+0.1
3,328,690	+		LRK54_RS15055	0.69	-3.1
3,328,691	-		LRK54_RS15055	0.69	-0.2
3,328,691	-		LRK54_RS15055	0.69	-0.6
3,328,691	-		LRK54_RS15055	0.69	+0.4
3,328,768	+		LRK54_RS15055	0.86	-0.9
3,328,768	+		LRK54_RS15055	0.86	-0.8
3,328,768	+		LRK54_RS15055	0.86	+0.0
3,328,768	+		LRK54_RS15055	0.86	+1.1
3,328,768	+		LRK54_RS15055	0.86	+2.0
3,328,768	+		LRK54_RS15055	0.86	-0.2
3,328,768	+		LRK54_RS15055	0.86	+2.0
3,328,768	+		LRK54_RS15055	0.86	-0.6
3,328,768	+		LRK54_RS15055	0.86	-0.9
3,328,768	+		LRK54_RS15055	0.86	-1.5
3,328,768	+		LRK54_RS15055	0.86	+0.9
3,328,768	+		LRK54_RS15055	0.86	-0.8
3,328,768	+		LRK54_RS15055	0.86	-1.8
3,328,768	+		LRK54_RS15055	0.86	+0.2
3,328,768	+		LRK54_RS15055	0.86	-0.7
3,328,769	-		LRK54_RS15055	0.86	+2.0
3,328,769	-		LRK54_RS15055	0.86	+1.1
3,328,769	-		LRK54_RS15055	0.86	-2.4
3,328,769	-		LRK54_RS15055	0.86	+0.0
3,328,769	-		LRK54_RS15055	0.86	-0.8
3,328,769	-		LRK54_RS15055	0.86	-1.0
3,328,769	-		LRK54_RS15055	0.86	-1.6
3,328,769	-		LRK54_RS15055	0.86	-0.3
3,328,769	-		LRK54_RS15055	0.86	-0.4
3,328,769	-		LRK54_RS15055	0.86	-0.1
3,328,769	-		LRK54_RS15055	0.86	+1.0
3,328,769	-		LRK54_RS15055	0.86	+0.2
3,328,769	-		LRK54_RS15055	0.86	+0.8
3,328,769	-		LRK54_RS15055	0.86	-1.5
3,328,769	-		LRK54_RS15055	0.86	-1.3
3,328,769	-		LRK54_RS15055	0.86	+1.0
3,328,769	-		LRK54_RS15055	0.86	+0.5
3,328,769	-		LRK54_RS15055	0.86	-1.3
3,328,769	-		LRK54_RS15055	0.86	+0.1
3,328,769	-		LRK54_RS15055	0.86	-1.2
3,329,052	+		LRK54_RS15060	0.20	-0.5
3,329,053	-		LRK54_RS15060	0.20	+1.4
3,329,053	-		LRK54_RS15060	0.20	-0.7
3,329,098	-		LRK54_RS15060	0.25	+0.7
3,329,098	-		LRK54_RS15060	0.25	-0.1
3,329,098	-		LRK54_RS15060	0.25	-0.6
3,329,098	-		LRK54_RS15060	0.25	+1.1
3,329,098	-		LRK54_RS15060	0.25	-0.8
3,329,098	-		LRK54_RS15060	0.25	-0.1
3,329,098	-		LRK54_RS15060	0.25	-0.6
3,329,206	+		LRK54_RS15060	0.37	-0.0
3,329,206	+		LRK54_RS15060	0.37	-1.4
3,329,207	-		LRK54_RS15060	0.37	+0.7
3,329,207	-		LRK54_RS15060	0.37	+0.7
3,329,207	-		LRK54_RS15060	0.37	-0.5
3,329,207	-		LRK54_RS15060	0.37	+0.8
3,329,207	-		LRK54_RS15060	0.37	+0.7
3,329,207	-		LRK54_RS15060	0.37	+1.5
3,329,207	-		LRK54_RS15060	0.37	-0.3
3,329,207	-		LRK54_RS15060	0.37	-0.7
3,329,207	-		LRK54_RS15060	0.37	-0.4
3,329,207	-		LRK54_RS15060	0.37	-0.7