Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS14430

Experiment: R2A with Nickel (II) chloride 0.3125 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Nickel (II) chloride 0.3125 mM
3,208,958	+		LRK54_RS14425	0.42	+0.2
3,208,958	+		LRK54_RS14425	0.42	-0.5
3,208,958	+		LRK54_RS14425	0.42	+0.6
3,208,959	-		LRK54_RS14425	0.42	+1.5
3,209,024	+		LRK54_RS14425	0.48	-2.0
3,209,024	+		LRK54_RS14425	0.48	-1.0
3,209,024	+		LRK54_RS14425	0.48	-0.3
3,209,030	+		LRK54_RS14425	0.48	-1.4
3,209,030	+		LRK54_RS14425	0.48	-1.4
3,209,030	+		LRK54_RS14425	0.48	+0.1
3,209,030	+		LRK54_RS14425	0.48	+1.6
3,209,030	+		LRK54_RS14425	0.48	-1.3
3,209,030	+		LRK54_RS14425	0.48	+1.6
3,209,030	+		LRK54_RS14425	0.48	-1.0
3,209,030	+		LRK54_RS14425	0.48	-1.3
3,209,030	+		LRK54_RS14425	0.48	+0.1
3,209,030	+		LRK54_RS14425	0.48	+2.0
3,209,030	+		LRK54_RS14425	0.48	+0.8
3,209,030	+		LRK54_RS14425	0.48	+0.1
3,209,030	+		LRK54_RS14425	0.48	-1.5
3,209,030	+		LRK54_RS14425	0.48	+0.5
3,209,030	+		LRK54_RS14425	0.48	-2.0
3,209,030	+		LRK54_RS14425	0.48	+2.4
3,209,030	+		LRK54_RS14425	0.48	+1.6
3,209,030	+		LRK54_RS14425	0.48	-2.2
3,209,030	+		LRK54_RS14425	0.48	-0.6
3,209,030	+		LRK54_RS14425	0.48	+0.2
3,209,030	+		LRK54_RS14425	0.48	-1.0
3,209,031	-		LRK54_RS14425	0.48	-0.9
3,209,031	-		LRK54_RS14425	0.48	+1.1
3,209,031	-		LRK54_RS14425	0.48	-2.7
3,209,031	-		LRK54_RS14425	0.48	+1.2
3,209,031	-		LRK54_RS14425	0.48	+0.1
3,209,031	-		LRK54_RS14425	0.48	+2.1
3,209,031	-		LRK54_RS14425	0.48	+1.0
3,209,031	-		LRK54_RS14425	0.48	+1.6
3,209,031	-		LRK54_RS14425	0.48	+0.2
3,209,031	-		LRK54_RS14425	0.48	+1.5
3,209,031	-		LRK54_RS14425	0.48	-1.5
3,209,031	-		LRK54_RS14425	0.48	+0.3
3,209,031	-		LRK54_RS14425	0.48	+0.3
3,209,031	-		LRK54_RS14425	0.48	-1.4
3,209,031	-		LRK54_RS14425	0.48	-1.6
3,209,031	-		LRK54_RS14425	0.48	-0.7
3,209,031	-		LRK54_RS14425	0.48	-1.2
3,209,031	-		LRK54_RS14425	0.48	-1.1
3,209,031	-		LRK54_RS14425	0.48	-2.4
3,209,031	-		LRK54_RS14425	0.48	-0.2
3,209,031	-		LRK54_RS14425	0.48	+0.2
3,209,031	-		LRK54_RS14425	0.48	-1.7
3,209,031	-		LRK54_RS14425	0.48	+0.3
3,209,069	+		LRK54_RS14425	0.52	+0.0
3,209,084	+		LRK54_RS14425	0.53	+0.5
3,209,228	+		LRK54_RS14425	0.65	-0.8
3,209,228	+		LRK54_RS14425	0.65	-1.1
3,209,229	-		LRK54_RS14425	0.66	-0.5
3,209,229	-		LRK54_RS14425	0.66	-0.5
3,209,237	+		LRK54_RS14425	0.66	+1.5
3,209,238	-		LRK54_RS14425	0.66	-0.1
3,209,238	-		LRK54_RS14425	0.66	+0.9
3,209,331	+		LRK54_RS14425	0.74	+0.9
3,209,331	+		LRK54_RS14425	0.74	-0.9
3,209,332	-		LRK54_RS14425	0.75	+0.2
3,209,333	+		LRK54_RS14425	0.75	+0.4
3,209,333	+		LRK54_RS14425	0.75	-0.9
3,209,333	+		LRK54_RS14425	0.75	-0.5
3,209,333	+		LRK54_RS14425	0.75	-0.3
3,209,333	+		LRK54_RS14425	0.75	-0.4
3,209,333	+		LRK54_RS14425	0.75	+0.7
3,209,334	-		LRK54_RS14425	0.75	-2.9
3,209,334	-		LRK54_RS14425	0.75	-2.4
3,209,334	-		LRK54_RS14425	0.75	-1.1
3,209,334	-		LRK54_RS14425	0.75	-1.2
3,209,334	-		LRK54_RS14425	0.75	-0.6
3,209,334	-		LRK54_RS14425	0.75	-0.4
3,209,334	-		LRK54_RS14425	0.75	+0.7
3,209,334	-		LRK54_RS14425	0.75	+0.4
3,209,360	+		LRK54_RS14425	0.77	+1.4
3,209,360	+		LRK54_RS14425	0.77	+1.2
3,209,360	+		LRK54_RS14425	0.77	+0.5
3,209,360	+		LRK54_RS14425	0.77	-0.1
3,209,361	-		LRK54_RS14425	0.77	-0.1
3,209,361	-		LRK54_RS14425	0.77	+0.6
3,209,361	-		LRK54_RS14425	0.77	-1.8
3,209,361	-		LRK54_RS14425	0.77	+0.1
3,209,361	-		LRK54_RS14425	0.77	+0.5
3,209,361	-		LRK54_RS14425	0.77	-0.4
3,209,361	-		LRK54_RS14425	0.77	-0.6
3,209,361	-		LRK54_RS14425	0.77	+0.4
3,209,361	-		LRK54_RS14425	0.77	-0.8
3,209,361	-		LRK54_RS14425	0.77	-0.4
3,209,361	-		LRK54_RS14425	0.77	-1.9
3,209,361	-		LRK54_RS14425	0.77	-0.6
3,209,492	+		LRK54_RS14425	0.89	-0.1
3,209,492	+		LRK54_RS14425	0.89	-0.1
3,209,492	+		LRK54_RS14425	0.89	-0.4
3,209,492	+		LRK54_RS14425	0.89	-1.8
3,209,492	+		LRK54_RS14425	0.89	-2.2
3,209,492	+		LRK54_RS14425	0.89	-0.3
3,209,492	+		LRK54_RS14425	0.89	-1.1
3,209,492	+		LRK54_RS14425	0.89	-1.3
3,209,492	+		LRK54_RS14425	0.89	-1.0
3,209,492	+		LRK54_RS14425	0.89	-0.9
3,209,492	+		LRK54_RS14425	0.89	-1.0
3,209,492	+		LRK54_RS14425	0.89	+1.7
3,209,492	+		LRK54_RS14425	0.89	+0.8
3,209,492	+		LRK54_RS14425	0.89	+1.1
3,209,492	+		LRK54_RS14425	0.89	-2.4
3,209,492	+		LRK54_RS14425	0.89	-1.0
3,209,492	+		LRK54_RS14425	0.89	-0.1
3,209,492	+		LRK54_RS14425	0.89	+0.5
3,209,492	+		LRK54_RS14425	0.89	-1.2
3,209,492	+		LRK54_RS14425	0.89	+0.3
3,209,492	+		LRK54_RS14425	0.89	-3.3
3,209,492	+		LRK54_RS14425	0.89	-2.1
3,209,492	+		LRK54_RS14425	0.89	+1.2
3,209,492	+		LRK54_RS14425	0.89	-0.8
3,209,492	+		LRK54_RS14425	0.89	-0.1
3,209,492	+		LRK54_RS14425	0.89	-1.4
3,209,492	+		LRK54_RS14425	0.89	+1.6
3,209,492	+		LRK54_RS14425	0.89	-1.8
3,209,492	+		LRK54_RS14425	0.89	-1.7
3,209,493	-		LRK54_RS14425	0.89	-0.2
3,209,493	-		LRK54_RS14425	0.89	+0.9
3,209,493	-		LRK54_RS14425	0.89	-2.2
3,209,493	-		LRK54_RS14425	0.89	-2.5
3,209,493	-		LRK54_RS14425	0.89	+0.7
3,209,493	-		LRK54_RS14425	0.89	-0.2
3,209,493	-		LRK54_RS14425	0.89	-0.8
3,209,493	-		LRK54_RS14425	0.89	-0.8
3,209,493	-		LRK54_RS14425	0.89	-1.0
3,209,493	-		LRK54_RS14425	0.89	-0.9
3,209,493	-		LRK54_RS14425	0.89	+0.7
3,209,493	-		LRK54_RS14425	0.89	+1.6
3,209,493	-		LRK54_RS14425	0.89	-1.5
3,209,493	-		LRK54_RS14425	0.89	-0.3
3,209,493	-		LRK54_RS14425	0.89	+0.3
3,209,493	-		LRK54_RS14425	0.89	+0.3
3,209,493	-		LRK54_RS14425	0.89	+0.4
3,209,493	-		LRK54_RS14425	0.89	+2.1
3,209,493	-		LRK54_RS14425	0.89	-0.1
3,209,493	-		LRK54_RS14425	0.89	+1.2
3,209,493	-		LRK54_RS14425	0.89	-0.6
3,209,493	-		LRK54_RS14425	0.89	-1.0
3,209,493	-		LRK54_RS14425	0.89	+1.2
3,209,493	-		LRK54_RS14425	0.89	-1.2
3,209,602	+				+0.5
3,209,602	+				+0.7
3,209,602	+				-0.2
3,209,602	+				+0.6
3,209,602	+				-0.6
3,209,602	+				-0.4
3,209,602	+				-1.4
3,209,602	+				-0.1
3,209,603	-				-0.1
3,209,603	-				+0.8
3,209,603	-				+0.3
3,209,603	-				-0.8
3,209,603	-				-1.2
3,209,603	-				-1.1
3,209,603	-				-0.1
3,209,603	-				+0.3
3,209,603	-				-0.8
3,209,603	-				+0.2
3,209,603	-				+1.1
3,209,603	-				-0.4
3,209,665	+				-0.0
3,209,665	+				-0.2
3,209,665	+				+1.6
3,209,665	+				-1.8
3,209,665	+				-1.9
3,209,666	-				+0.3
3,209,666	-				-0.1
3,209,666	-				-3.2
3,209,666	-				-1.2
3,209,713	+				+0.8
3,209,714	-				-1.7
3,209,714	-				+1.1
3,209,714	-				-1.0
3,209,927	+		LRK54_RS14430	0.20	+0.6
3,209,928	-		LRK54_RS14430	0.21	+0.6
3,209,961	+		LRK54_RS14430	0.24	+0.0
3,209,961	+		LRK54_RS14430	0.24	-0.5
3,209,962	-		LRK54_RS14430	0.25	-0.6
3,209,962	-		LRK54_RS14430	0.25	-0.3
3,209,962	-		LRK54_RS14430	0.25	+0.4
3,209,962	-		LRK54_RS14430	0.25	-0.0
3,210,029	+		LRK54_RS14430	0.33	-0.0
3,210,030	-		LRK54_RS14430	0.33	-0.4
3,210,030	-		LRK54_RS14430	0.33	-0.4
3,210,293	+		LRK54_RS14430	0.64	-0.3
3,210,293	+		LRK54_RS14430	0.64	+0.9
3,210,294	-		LRK54_RS14430	0.64	-1.7
3,210,294	-		LRK54_RS14430	0.64	+3.1
3,210,294	-		LRK54_RS14430	0.64	+2.0
3,210,294	-		LRK54_RS14430	0.64	+0.8
3,210,294	-		LRK54_RS14430	0.64	-1.1
3,210,320	+		LRK54_RS14430	0.67	+0.2
3,210,320	+		LRK54_RS14430	0.67	-3.2
3,210,320	+		LRK54_RS14430	0.67	-1.7
3,210,320	+		LRK54_RS14430	0.67	-0.3
3,210,320	+		LRK54_RS14430	0.67	-1.5
3,210,320	+		LRK54_RS14430	0.67	-0.5
3,210,320	+		LRK54_RS14430	0.67	-1.8
3,210,320	+		LRK54_RS14430	0.67	-0.4
3,210,321	-		LRK54_RS14430	0.68	-0.3
3,210,321	-		LRK54_RS14430	0.68	-2.5
3,210,321	-		LRK54_RS14430	0.68	+0.1
3,210,321	-		LRK54_RS14430	0.68	+1.6
3,210,321	-		LRK54_RS14430	0.68	+0.9
3,210,442	-		LRK54_RS14430	0.82	+0.6
3,210,557	+				+0.7
3,210,557	+				+0.3
3,210,557	+				+0.2
3,210,557	+				+0.0
3,210,557	+				+1.6
3,210,557	+				-0.0
3,210,557	+				-1.3
3,210,557	+				-1.0
3,210,557	+				-0.0
3,210,558	-				-0.2
3,210,558	-				-1.5
3,210,558	-				+0.6
3,210,558	-				+0.2
3,210,558	-				-0.9
3,210,558	-				-0.1
3,210,558	-				-1.6
3,210,558	-				+0.9
3,210,639	+				+0.1
3,210,639	+				+1.7
3,210,639	+				+0.8
3,210,639	+				-0.7
3,210,640	-				-0.8
3,210,640	-				+0.0
3,210,640	-				+0.9
3,210,697	+		LRK54_RS14435	0.15	+2.2
3,210,697	+		LRK54_RS14435	0.15	+0.7
3,210,697	+		LRK54_RS14435	0.15	+0.2
3,210,697	+		LRK54_RS14435	0.15	+0.3
3,210,697	+		LRK54_RS14435	0.15	+0.8
3,210,697	+		LRK54_RS14435	0.15	-1.5
3,210,697	+		LRK54_RS14435	0.15	-0.1
3,210,697	+		LRK54_RS14435	0.15	+0.2
3,210,697	+		LRK54_RS14435	0.15	-0.4
3,210,697	+		LRK54_RS14435	0.15	-1.2
3,210,697	+		LRK54_RS14435	0.15	-0.1
3,210,697	+		LRK54_RS14435	0.15	+2.1
3,210,697	+		LRK54_RS14435	0.15	-0.6
3,210,697	+		LRK54_RS14435	0.15	-1.1
3,210,697	+		LRK54_RS14435	0.15	-1.5
3,210,697	+		LRK54_RS14435	0.15	+0.1
3,210,697	+		LRK54_RS14435	0.15	-2.1
3,210,697	+		LRK54_RS14435	0.15	+0.3
3,210,697	+		LRK54_RS14435	0.15	-1.6
3,210,697	+		LRK54_RS14435	0.15	+2.2
3,210,697	+		LRK54_RS14435	0.15	-1.2
3,210,697	+		LRK54_RS14435	0.15	+0.3
3,210,697	+		LRK54_RS14435	0.15	-0.1
3,210,697	+		LRK54_RS14435	0.15	-1.6
3,210,697	+		LRK54_RS14435	0.15	-0.6
3,210,697	+		LRK54_RS14435	0.15	-3.3
3,210,697	+		LRK54_RS14435	0.15	+0.5
3,210,697	+		LRK54_RS14435	0.15	+3.2
3,210,697	+		LRK54_RS14435	0.15	+0.4
3,210,697	+		LRK54_RS14435	0.15	+0.5
3,210,697	+		LRK54_RS14435	0.15	-0.6
3,210,697	+		LRK54_RS14435	0.15	-0.3
3,210,697	+		LRK54_RS14435	0.15	-0.2
3,210,697	+		LRK54_RS14435	0.15	-0.0
3,210,697	+		LRK54_RS14435	0.15	+0.5
3,210,697	+		LRK54_RS14435	0.15	+1.0
3,210,697	+		LRK54_RS14435	0.15	+0.6
3,210,697	+		LRK54_RS14435	0.15	-0.8
3,210,697	+		LRK54_RS14435	0.15	+1.5
3,210,697	+		LRK54_RS14435	0.15	-0.2
3,210,697	+		LRK54_RS14435	0.15	-0.4
3,210,697	+		LRK54_RS14435	0.15	+0.2
3,210,697	+		LRK54_RS14435	0.15	+0.1
3,210,698	-		LRK54_RS14435	0.15	-1.0
3,210,698	-		LRK54_RS14435	0.15	-1.3
3,210,698	-		LRK54_RS14435	0.15	-0.8
3,210,698	-		LRK54_RS14435	0.15	-0.6
3,210,698	-		LRK54_RS14435	0.15	+0.2
3,210,698	-		LRK54_RS14435	0.15	+0.4
3,210,698	-		LRK54_RS14435	0.15	-0.9
3,210,698	-		LRK54_RS14435	0.15	+0.9
3,210,698	-		LRK54_RS14435	0.15	-1.8
3,210,698	-		LRK54_RS14435	0.15	-1.4
3,210,698	-		LRK54_RS14435	0.15	+0.1
3,210,698	-		LRK54_RS14435	0.15	+0.1
3,210,698	-		LRK54_RS14435	0.15	-1.2
3,210,698	-		LRK54_RS14435	0.15	-0.2
3,210,698	-		LRK54_RS14435	0.15	-0.0
3,210,698	-		LRK54_RS14435	0.15	+0.6
3,210,698	-		LRK54_RS14435	0.15	+0.4
3,210,698	-		LRK54_RS14435	0.15	-0.5
3,210,698	-		LRK54_RS14435	0.15	+0.6
3,210,698	-		LRK54_RS14435	0.15	-1.0
3,210,698	-		LRK54_RS14435	0.15	+0.3
3,210,698	-		LRK54_RS14435	0.15	-3.4
3,210,698	-		LRK54_RS14435	0.15	-1.1
3,210,698	-		LRK54_RS14435	0.15	-0.5
3,210,698	-		LRK54_RS14435	0.15	+2.3
3,210,776	-		LRK54_RS14435	0.32	-0.3
3,210,776	-		LRK54_RS14435	0.32	+0.9
3,210,776	-		LRK54_RS14435	0.32	+2.6
3,210,868	+		LRK54_RS14435	0.52	+0.8
3,210,869	-		LRK54_RS14435	0.52	-1.1
3,210,869	-		LRK54_RS14435	0.52	+0.5
3,210,869	-		LRK54_RS14435	0.52	-2.8
3,210,869	-		LRK54_RS14435	0.52	-0.1
3,210,949	+		LRK54_RS14435	0.69	+0.5
3,210,949	+		LRK54_RS14435	0.69	-2.2
3,210,949	+		LRK54_RS14435	0.69	-1.1
3,210,949	+		LRK54_RS14435	0.69	-0.8
3,210,949	+		LRK54_RS14435	0.69	+0.7
3,210,949	+		LRK54_RS14435	0.69	-1.1
3,210,949	+		LRK54_RS14435	0.69	-2.7
3,210,950	-		LRK54_RS14435	0.70	-0.7
3,210,950	-		LRK54_RS14435	0.70	+0.0
3,211,066	+				+1.3
3,211,066	+				+0.2
3,211,066	+				-1.8
3,211,066	+				+0.2
3,211,066	+				+0.3
3,211,066	+				+0.1
3,211,066	+				+0.2
3,211,066	+				+0.7
3,211,067	-				+1.1
3,211,067	-				-2.4
3,211,067	-				+1.0
3,211,067	-				+0.4
3,211,067	-				-2.5
3,211,067	-				+0.9
3,211,067	-				+0.7
3,211,190	-				-0.7
3,211,190	-				-0.2
3,211,285	+		LRK54_RS14440	0.22	-0.1
3,211,285	+		LRK54_RS14440	0.22	+3.0
3,211,285	+		LRK54_RS14440	0.22	-0.1
3,211,285	+		LRK54_RS14440	0.22	-2.9
3,211,286	-		LRK54_RS14440	0.23	-0.3
3,211,286	-		LRK54_RS14440	0.23	-0.8
3,211,286	-		LRK54_RS14440	0.23	-1.9
3,211,372	+		LRK54_RS14440	0.37	-0.1
3,211,372	+		LRK54_RS14440	0.37	+0.3
3,211,372	+		LRK54_RS14440	0.37	-1.7
3,211,372	+		LRK54_RS14440	0.37	-0.5
3,211,372	+		LRK54_RS14440	0.37	+0.1
3,211,372	+		LRK54_RS14440	0.37	+1.0
3,211,372	+		LRK54_RS14440	0.37	-0.1
3,211,372	+		LRK54_RS14440	0.37	-0.0
3,211,372	+		LRK54_RS14440	0.37	+0.7
3,211,372	+		LRK54_RS14440	0.37	-1.7
3,211,372	+		LRK54_RS14440	0.37	+0.8
3,211,373	-		LRK54_RS14440	0.37	-0.4
3,211,373	-		LRK54_RS14440	0.37	+0.3
3,211,373	-		LRK54_RS14440	0.37	+0.3
3,211,373	-		LRK54_RS14440	0.37	-1.4
3,211,373	-		LRK54_RS14440	0.37	+0.6
3,211,373	-		LRK54_RS14440	0.37	+0.2
3,211,373	-		LRK54_RS14440	0.37	-1.4
3,211,373	-		LRK54_RS14440	0.37	-0.4
3,211,373	-		LRK54_RS14440	0.37	+1.3
3,211,373	-		LRK54_RS14440	0.37	+0.9
3,211,373	-		LRK54_RS14440	0.37	-0.9
3,211,373	-		LRK54_RS14440	0.37	-3.2
3,211,373	-		LRK54_RS14440	0.37	+0.4
3,211,373	-		LRK54_RS14440	0.37	-0.6
3,211,373	-		LRK54_RS14440	0.37	-2.0
3,211,373	-		LRK54_RS14440	0.37	-0.5
3,211,373	-		LRK54_RS14440	0.37	+1.6
3,211,373	-		LRK54_RS14440	0.37	+0.9
3,211,373	-		LRK54_RS14440	0.37	-1.4
3,211,378	+		LRK54_RS14440	0.38	-0.2
3,211,378	+		LRK54_RS14440	0.38	-1.3
3,211,378	+		LRK54_RS14440	0.38	+1.5
3,211,379	-		LRK54_RS14440	0.38	-1.7
3,211,379	-		LRK54_RS14440	0.38	-0.3
3,211,379	-		LRK54_RS14440	0.38	-2.6
3,211,379	-		LRK54_RS14440	0.38	-0.9
3,211,379	-		LRK54_RS14440	0.38	+2.9
3,211,379	-		LRK54_RS14440	0.38	+0.4
3,211,379	-		LRK54_RS14440	0.38	+1.1
3,211,387	+		LRK54_RS14440	0.40	+0.9
3,211,387	+		LRK54_RS14440	0.40	-1.0
3,211,387	+		LRK54_RS14440	0.40	-2.2
3,211,387	+		LRK54_RS14440	0.40	-0.2
3,211,387	+		LRK54_RS14440	0.40	+1.2
3,211,387	+		LRK54_RS14440	0.40	-1.0
3,211,387	+		LRK54_RS14440	0.40	-0.6
3,211,388	-		LRK54_RS14440	0.40	+0.7
3,211,388	-		LRK54_RS14440	0.40	-1.1
3,211,388	-		LRK54_RS14440	0.40	-0.2
3,211,388	-		LRK54_RS14440	0.40	-1.8
3,211,388	-		LRK54_RS14440	0.40	-1.4
3,211,388	-		LRK54_RS14440	0.40	-1.5
3,211,388	-		LRK54_RS14440	0.40	-0.1
3,211,388	-		LRK54_RS14440	0.40	+0.1
3,211,388	-		LRK54_RS14440	0.40	+1.8
3,211,388	-		LRK54_RS14440	0.40	+2.8
3,211,388	-		LRK54_RS14440	0.40	-1.4
3,211,388	-		LRK54_RS14440	0.40	-0.0