Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS13990

Experiment: R2A with Nickel (II) chloride 0.3125 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Nickel (II) chloride 0.3125 mM
3,118,127	+		LRK54_RS13980	0.47	+0.7
3,118,127	+		LRK54_RS13980	0.47	+1.6
3,118,127	+		LRK54_RS13980	0.47	+1.0
3,118,127	+		LRK54_RS13980	0.47	-0.3
3,118,127	+		LRK54_RS13980	0.47	+1.3
3,118,127	+		LRK54_RS13980	0.47	+0.3
3,118,127	+		LRK54_RS13980	0.47	-0.2
3,118,128	-		LRK54_RS13980	0.47	-1.0
3,118,128	-		LRK54_RS13980	0.47	-0.3
3,118,128	-		LRK54_RS13980	0.47	+0.2
3,118,128	-		LRK54_RS13980	0.47	-0.5
3,118,128	-		LRK54_RS13980	0.47	-1.0
3,118,128	-		LRK54_RS13980	0.47	-0.7
3,118,128	-		LRK54_RS13980	0.47	-1.5
3,118,128	-		LRK54_RS13980	0.47	-1.4
3,118,128	-		LRK54_RS13980	0.47	-1.2
3,118,128	-		LRK54_RS13980	0.47	+0.6
3,118,134	+		LRK54_RS13980	0.48	+0.3
3,118,134	+		LRK54_RS13980	0.48	-0.6
3,118,135	-		LRK54_RS13980	0.49	-1.9
3,118,135	-		LRK54_RS13980	0.49	-0.8
3,118,135	-		LRK54_RS13980	0.49	-0.9
3,118,648	+		LRK54_RS13985	0.61	+2.8
3,118,648	+		LRK54_RS13985	0.61	+0.3
3,118,648	+		LRK54_RS13985	0.61	-1.1
3,118,648	+		LRK54_RS13985	0.61	-1.8
3,118,648	+		LRK54_RS13985	0.61	-1.4
3,118,648	+		LRK54_RS13985	0.61	+0.5
3,118,648	+		LRK54_RS13985	0.61	-0.3
3,118,648	+		LRK54_RS13985	0.61	+2.2
3,118,648	+		LRK54_RS13985	0.61	-0.9
3,118,648	+		LRK54_RS13985	0.61	-0.2
3,118,648	+		LRK54_RS13985	0.61	-0.1
3,118,648	+		LRK54_RS13985	0.61	-1.0
3,118,648	+		LRK54_RS13985	0.61	+0.7
3,118,648	+		LRK54_RS13985	0.61	+0.2
3,118,648	+		LRK54_RS13985	0.61	-1.9
3,118,648	+		LRK54_RS13985	0.61	+0.6
3,118,648	+		LRK54_RS13985	0.61	+0.0
3,118,648	+		LRK54_RS13985	0.61	+0.1
3,118,648	+		LRK54_RS13985	0.61	-0.1
3,118,648	+		LRK54_RS13985	0.61	-2.6
3,118,649	-		LRK54_RS13985	0.61	-2.8
3,118,649	-		LRK54_RS13985	0.61	+0.7
3,118,649	-		LRK54_RS13985	0.61	-2.0
3,118,649	-		LRK54_RS13985	0.61	-1.2
3,118,649	-		LRK54_RS13985	0.61	+2.1
3,118,649	-		LRK54_RS13985	0.61	+1.1
3,118,649	-		LRK54_RS13985	0.61	+1.5
3,118,649	-		LRK54_RS13985	0.61	-0.7
3,118,649	-		LRK54_RS13985	0.61	+0.2
3,118,649	-		LRK54_RS13985	0.61	-0.6
3,118,649	-		LRK54_RS13985	0.61	+0.2
3,118,649	-		LRK54_RS13985	0.61	-0.9
3,118,649	-		LRK54_RS13985	0.61	+0.0
3,118,649	-		LRK54_RS13985	0.61	+0.1
3,118,649	-		LRK54_RS13985	0.61	-0.7
3,118,649	-		LRK54_RS13985	0.61	+2.8
3,118,649	-		LRK54_RS13985	0.61	+0.5
3,118,649	-		LRK54_RS13985	0.61	-0.1
3,118,649	-		LRK54_RS13985	0.61	+0.4
3,118,649	-		LRK54_RS13985	0.61	+0.7
3,118,649	-		LRK54_RS13985	0.61	+0.3
3,118,649	-		LRK54_RS13985	0.61	+1.9
3,118,649	-		LRK54_RS13985	0.61	-1.9
3,118,649	-		LRK54_RS13985	0.61	-0.7
3,118,881	+				+0.1
3,118,881	+				-1.4
3,118,881	+				-0.8
3,118,881	+				-1.3
3,118,881	+				-0.1
3,118,882	-				-1.3
3,118,882	-				+0.8
3,118,882	-				-1.8
3,118,882	-				-2.4
3,118,882	-				-0.5
3,118,882	-				-0.3
3,118,882	-				-2.2
3,118,882	-				+1.0
3,118,996	+				+1.0
3,118,996	+				+0.1
3,118,996	+				-0.8
3,118,996	+				+0.1
3,118,996	+				+1.4
3,118,996	+				+1.2
3,118,996	+				+0.3
3,118,996	+				+0.2
3,118,996	+				-2.1
3,118,997	-				-1.2
3,118,997	-				-2.6
3,118,997	-				+2.3
3,118,997	-				+0.7
3,118,997	-				-0.6
3,118,997	-				+0.3
3,118,997	-				+0.5
3,119,085	+				-0.4
3,119,085	+				+0.5
3,119,085	+				+1.7
3,119,085	+				-0.4
3,119,085	+				-1.1
3,119,085	+				+1.0
3,119,085	+				-0.8
3,119,085	+				-2.0
3,119,085	+				-0.1
3,119,085	+				+0.6
3,119,085	+				-0.4
3,119,085	+				-0.3
3,119,085	+				-0.9
3,119,085	+				-1.4
3,119,086	-				+0.5
3,119,086	-				+0.9
3,119,086	-				-0.8
3,119,086	-				+0.5
3,119,086	-				-3.9
3,119,086	-				-0.5
3,119,086	-				+0.5
3,119,086	-				+1.2
3,119,086	-				+1.1
3,119,086	-				-1.2
3,119,086	-				-0.5
3,119,086	-				+1.6
3,119,265	+				-1.2
3,119,265	+				+0.1
3,119,265	+				+1.3
3,119,265	+				-1.0
3,119,265	+				-1.7
3,119,265	+				+1.5
3,119,265	+				-0.9
3,119,265	+				-0.2
3,119,265	+				+1.4
3,119,265	+				-0.7
3,119,265	+				+1.3
3,119,265	+				+2.8
3,119,265	+				-0.6
3,119,265	+				+0.2
3,119,266	-				-1.5
3,119,266	-				+0.6
3,119,266	-				-0.5
3,119,266	-				+0.4
3,119,266	-				+0.1
3,119,266	-				-1.1
3,119,266	-				-1.2
3,119,266	-				-1.3
3,119,266	-				-2.0
3,119,266	-				-1.5
3,119,266	-				-2.1
3,119,266	-				-1.7
3,119,266	-				-0.2
3,119,266	-				+0.8
3,119,266	-				-1.2
3,119,266	-				+0.0
3,119,266	-				-1.4
3,119,266	-				+0.8
3,119,266	-				+0.2
3,119,373	+				-1.2
3,119,373	+				-0.5
3,119,373	+				+2.1
3,119,373	+				-1.0
3,119,373	+				-0.4
3,119,373	+				+3.3
3,119,373	+				+0.1
3,119,373	+				+1.6
3,119,373	+				-1.5
3,119,373	+				-0.7
3,119,373	+				+0.5
3,119,373	+				-0.3
3,119,373	+				-0.4
3,119,374	-				-1.7
3,119,374	-				+0.3
3,119,374	-				+1.6
3,119,374	-				-0.2
3,119,374	-				+0.0
3,119,374	-				+0.6
3,119,374	-				+0.4
3,119,374	-				-0.6
3,119,374	-				+0.1
3,119,374	-				-0.6
3,119,374	-				-0.7
3,119,374	-				-0.0
3,119,374	-				+2.1
3,119,374	-				+1.2
3,119,374	-				-1.0
3,119,374	-				+0.5
3,119,374	-				-1.1
3,119,374	-				-0.8
3,119,382	+				-0.2
3,119,382	+				-0.3
3,119,382	+				-2.1
3,119,382	+				-0.1
3,119,382	+				+0.4
3,119,382	+				+0.2
3,119,382	+				+0.1
3,119,383	-				+0.8
3,119,383	-				-0.4
3,119,383	-				+1.3
3,119,383	-				+0.6
3,119,383	-				+0.1
3,119,383	-				+0.4
3,119,383	-				+0.4
3,119,388	+				+0.1
3,119,388	+				-0.9
3,119,388	+				+0.1
3,119,388	+				-0.0
3,119,388	+				+0.8
3,119,388	+				-0.8
3,119,388	+				-2.1
3,119,389	-				+1.8
3,119,389	-				-1.9
3,119,389	-				-1.3
3,119,389	-				-0.7
3,119,389	-				-0.7
3,119,389	-				-2.1
3,119,389	-				+0.6
3,119,389	-				-1.9
3,119,409	+				+0.0
3,119,409	+				+0.9
3,119,410	-				+0.5
3,119,410	-				-1.8
3,119,520	+		LRK54_RS13990	0.12	-2.3
3,119,520	+		LRK54_RS13990	0.12	-1.5
3,119,520	+		LRK54_RS13990	0.12	-0.5
3,119,520	+		LRK54_RS13990	0.12	-0.9
3,119,520	+		LRK54_RS13990	0.12	-1.9
3,119,520	+		LRK54_RS13990	0.12	-1.1
3,119,520	+		LRK54_RS13990	0.12	+0.4
3,119,521	-		LRK54_RS13990	0.12	-2.9
3,119,521	-		LRK54_RS13990	0.12	+1.0
3,119,521	-		LRK54_RS13990	0.12	+0.2
3,119,521	-		LRK54_RS13990	0.12	-0.1
3,119,521	-		LRK54_RS13990	0.12	-0.5
3,119,521	-		LRK54_RS13990	0.12	+0.7
3,119,521	-		LRK54_RS13990	0.12	-0.7
3,119,521	-		LRK54_RS13990	0.12	+0.6
3,119,673	+		LRK54_RS13990	0.16	-0.9
3,119,674	-		LRK54_RS13990	0.16	-0.0
3,119,674	-		LRK54_RS13990	0.16	-1.1
3,119,691	+		LRK54_RS13990	0.16	-1.0
3,119,691	+		LRK54_RS13990	0.16	-0.3
3,119,691	+		LRK54_RS13990	0.16	-1.2
3,119,691	+		LRK54_RS13990	0.16	+0.9
3,119,691	+		LRK54_RS13990	0.16	-1.7
3,119,691	+		LRK54_RS13990	0.16	+0.3
3,119,691	+		LRK54_RS13990	0.16	-1.8
3,119,691	+		LRK54_RS13990	0.16	+2.8
3,119,692	-		LRK54_RS13990	0.16	-0.9
3,119,692	-		LRK54_RS13990	0.16	+1.2
3,119,692	-		LRK54_RS13990	0.16	-0.3
3,119,692	-		LRK54_RS13990	0.16	+0.0
3,119,692	-		LRK54_RS13990	0.16	-2.1
3,119,692	-		LRK54_RS13990	0.16	+0.9
3,119,692	-		LRK54_RS13990	0.16	+0.6
3,119,692	-		LRK54_RS13990	0.16	+0.5
3,119,692	-		LRK54_RS13990	0.16	+0.6
3,119,727	+		LRK54_RS13990	0.17	-3.3
3,119,727	+		LRK54_RS13990	0.17	-1.5
3,119,727	+		LRK54_RS13990	0.17	+0.5
3,119,727	+		LRK54_RS13990	0.17	-0.3
3,119,727	+		LRK54_RS13990	0.17	-1.7
3,119,727	+		LRK54_RS13990	0.17	-1.3
3,119,728	-		LRK54_RS13990	0.17	+2.3
3,119,728	-		LRK54_RS13990	0.17	-0.3
3,119,728	-		LRK54_RS13990	0.17	-0.0
3,119,728	-		LRK54_RS13990	0.17	-1.3
3,119,736	+		LRK54_RS13990	0.17	+0.7
3,119,736	+		LRK54_RS13990	0.17	-1.3
3,119,736	+		LRK54_RS13990	0.17	+0.8
3,119,736	+		LRK54_RS13990	0.17	+0.3
3,119,737	-		LRK54_RS13990	0.18	-0.5
3,119,737	-		LRK54_RS13990	0.18	+0.1
3,119,737	-		LRK54_RS13990	0.18	-0.7
3,119,737	-		LRK54_RS13990	0.18	-1.1
3,119,808	+		LRK54_RS13990	0.19	-1.0
3,119,808	+		LRK54_RS13990	0.19	-2.1
3,119,808	+		LRK54_RS13990	0.19	-0.4
3,119,808	+		LRK54_RS13990	0.19	+0.4
3,119,808	+		LRK54_RS13990	0.19	+1.1
3,119,808	+		LRK54_RS13990	0.19	-0.8
3,119,808	+		LRK54_RS13990	0.19	-0.7
3,119,808	+		LRK54_RS13990	0.19	-0.3
3,119,808	+		LRK54_RS13990	0.19	-0.2
3,119,808	+		LRK54_RS13990	0.19	-0.7
3,119,808	+		LRK54_RS13990	0.19	+1.5
3,119,808	+		LRK54_RS13990	0.19	+0.1
3,119,808	+		LRK54_RS13990	0.19	-0.8
3,119,809	-		LRK54_RS13990	0.19	-0.1
3,119,809	-		LRK54_RS13990	0.19	-0.6
3,119,809	-		LRK54_RS13990	0.19	-0.6
3,119,809	-		LRK54_RS13990	0.19	-0.7
3,119,809	-		LRK54_RS13990	0.19	+0.0
3,119,809	-		LRK54_RS13990	0.19	-0.3
3,119,820	+		LRK54_RS13990	0.20	-0.0
3,119,820	+		LRK54_RS13990	0.20	-1.3
3,119,820	+		LRK54_RS13990	0.20	-2.0
3,119,820	+		LRK54_RS13990	0.20	+0.8
3,119,820	+		LRK54_RS13990	0.20	+1.3
3,119,821	-		LRK54_RS13990	0.20	+0.3
3,119,821	-		LRK54_RS13990	0.20	-0.5
3,119,821	-		LRK54_RS13990	0.20	-1.4
3,119,821	-		LRK54_RS13990	0.20	-2.0
3,119,821	-		LRK54_RS13990	0.20	-0.2
3,119,821	-		LRK54_RS13990	0.20	-1.4
3,119,821	-		LRK54_RS13990	0.20	-2.2
3,119,821	-		LRK54_RS13990	0.20	-0.3
3,119,821	-		LRK54_RS13990	0.20	-0.9
3,119,821	-		LRK54_RS13990	0.20	+0.3
3,119,821	-		LRK54_RS13990	0.20	+0.7
3,119,821	-		LRK54_RS13990	0.20	-0.2
3,119,892	+		LRK54_RS13990	0.22	+1.0
3,119,892	+		LRK54_RS13990	0.22	-1.6
3,119,892	+		LRK54_RS13990	0.22	+1.1
3,119,892	+		LRK54_RS13990	0.22	+1.7
3,119,893	-		LRK54_RS13990	0.22	-3.1
3,119,928	+		LRK54_RS13990	0.23	-0.6
3,119,928	+		LRK54_RS13990	0.23	-0.2
3,119,928	+		LRK54_RS13990	0.23	-1.5
3,119,928	+		LRK54_RS13990	0.23	+0.2
3,119,928	+		LRK54_RS13990	0.23	+1.3
3,119,928	+		LRK54_RS13990	0.23	-1.3
3,119,929	-		LRK54_RS13990	0.23	-0.3
3,119,929	-		LRK54_RS13990	0.23	-1.4
3,119,929	-		LRK54_RS13990	0.23	+1.4
3,119,929	-		LRK54_RS13990	0.23	-1.5
3,119,929	-		LRK54_RS13990	0.23	-1.8
3,119,929	-		LRK54_RS13990	0.23	-0.5
3,119,929	-		LRK54_RS13990	0.23	-0.6
3,119,929	-		LRK54_RS13990	0.23	+1.7
3,119,929	-		LRK54_RS13990	0.23	-2.0
3,120,051	+		LRK54_RS13990	0.26	+0.5
3,120,051	+		LRK54_RS13990	0.26	-2.2
3,120,051	+		LRK54_RS13990	0.26	+1.0
3,120,051	+		LRK54_RS13990	0.26	-1.2
3,120,051	+		LRK54_RS13990	0.26	-2.3
3,120,051	+		LRK54_RS13990	0.26	-0.6
3,120,051	+		LRK54_RS13990	0.26	-2.5
3,120,052	-		LRK54_RS13990	0.26	+0.1
3,120,052	-		LRK54_RS13990	0.26	+0.7
3,120,052	-		LRK54_RS13990	0.26	+0.2
3,120,052	-		LRK54_RS13990	0.26	-1.1
3,120,052	-		LRK54_RS13990	0.26	-0.0
3,120,052	-		LRK54_RS13990	0.26	-0.2
3,120,052	-		LRK54_RS13990	0.26	-0.8
3,120,052	-		LRK54_RS13990	0.26	+1.0
3,120,052	-		LRK54_RS13990	0.26	+0.0
3,120,052	-		LRK54_RS13990	0.26	-1.3
3,120,063	+		LRK54_RS13990	0.26	+0.9
3,120,063	+		LRK54_RS13990	0.26	+0.7
3,120,063	+		LRK54_RS13990	0.26	-0.3
3,120,063	+		LRK54_RS13990	0.26	+0.8
3,120,064	-		LRK54_RS13990	0.26	-0.2
3,120,075	+		LRK54_RS13990	0.26	+0.1
3,120,075	+		LRK54_RS13990	0.26	+0.2
3,120,075	+		LRK54_RS13990	0.26	-0.2
3,120,075	+		LRK54_RS13990	0.26	-0.4
3,120,076	-		LRK54_RS13990	0.27	-1.3
3,120,076	-		LRK54_RS13990	0.27	+0.5
3,120,076	-		LRK54_RS13990	0.27	+0.9
3,120,076	-		LRK54_RS13990	0.27	+0.9
3,120,076	-		LRK54_RS13990	0.27	+0.0
3,120,076	-		LRK54_RS13990	0.27	-1.5
3,120,076	-		LRK54_RS13990	0.27	-1.5
3,120,375	+		LRK54_RS13990	0.34	+1.8
3,120,376	-		LRK54_RS13990	0.35	-1.2
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3,120,519	+		LRK54_RS13990	0.38	-1.3
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3,123,369	-		LRK54_RS13995	0.34	+1.6
3,123,437	+		LRK54_RS13995	0.39	+1.5
3,123,437	+		LRK54_RS13995	0.39	-1.8
3,123,437	+		LRK54_RS13995	0.39	+0.3
3,123,437	+		LRK54_RS13995	0.39	+0.3
3,123,437	+		LRK54_RS13995	0.39	-2.0
3,123,438	-		LRK54_RS13995	0.39	-0.7
3,123,438	-		LRK54_RS13995	0.39	-1.6
3,123,438	-		LRK54_RS13995	0.39	+0.7
3,123,438	-		LRK54_RS13995	0.39	-0.1
3,123,438	-		LRK54_RS13995	0.39	+0.1
3,123,438	-		LRK54_RS13995	0.39	-0.6
3,123,438	-		LRK54_RS13995	0.39	-0.2
3,123,438	-		LRK54_RS13995	0.39	-2.6
3,123,519	-		LRK54_RS13995	0.44	+0.9
3,123,519	-		LRK54_RS13995	0.44	+0.2
3,123,530	+		LRK54_RS13995	0.45	+0.3
3,123,530	+		LRK54_RS13995	0.45	-0.6
3,123,530	+		LRK54_RS13995	0.45	-1.4
3,123,530	+		LRK54_RS13995	0.45	+0.6
3,123,530	+		LRK54_RS13995	0.45	-0.9
3,123,530	+		LRK54_RS13995	0.45	-0.4
3,123,530	+		LRK54_RS13995	0.45	+2.8
3,123,530	+		LRK54_RS13995	0.45	-1.6
3,123,530	+		LRK54_RS13995	0.45	+0.4
3,123,530	+		LRK54_RS13995	0.45	+1.1
3,123,530	+		LRK54_RS13995	0.45	+0.5
3,123,530	+		LRK54_RS13995	0.45	+2.6
3,123,531	-		LRK54_RS13995	0.45	-0.6
3,123,531	-		LRK54_RS13995	0.45	-1.7
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3,123,531	-		LRK54_RS13995	0.45	-1.0
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3,123,576	-		LRK54_RS13995	0.48	-2.0
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3,123,710	+		LRK54_RS13995	0.57	-0.4
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3,123,710	+		LRK54_RS13995	0.57	-0.8
3,123,711	-		LRK54_RS13995	0.57	+0.2
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3,123,711	-		LRK54_RS13995	0.57	-0.8
3,123,824	+		LRK54_RS13995	0.64	-2.2
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3,123,824	+		LRK54_RS13995	0.64	-0.7
3,123,824	+		LRK54_RS13995	0.64	+0.0