Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS12325

Experiment: R2A with Nickel (II) chloride 0.3125 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Nickel (II) chloride 0.3125 mM
2,742,617	-				+0.6
2,742,617	-				+1.3
2,742,617	-				-1.0
2,742,617	-				-1.5
2,742,617	-				-0.4
2,742,617	-				-0.1
2,742,660	-				+1.3
2,742,660	-				+1.3
2,742,665	-				-0.5
2,742,665	-				-0.4
2,742,665	-				-1.7
2,742,665	-				-0.4
2,742,665	-				-1.7
2,742,665	-				+1.1
2,742,665	-				-1.2
2,742,782	+				-0.8
2,742,782	+				+1.7
2,742,782	+				-0.9
2,742,783	-				+0.4
2,742,783	-				-0.9
2,742,783	-				-0.3
2,742,783	-				+1.3
2,742,920	+		LRK54_RS12325	0.15	+0.1
2,742,920	+		LRK54_RS12325	0.15	+1.0
2,742,920	+		LRK54_RS12325	0.15	+0.9
2,742,920	+		LRK54_RS12325	0.15	-1.4
2,742,920	+		LRK54_RS12325	0.15	+0.5
2,742,920	+		LRK54_RS12325	0.15	-2.0
2,742,920	+		LRK54_RS12325	0.15	+1.7
2,742,920	+		LRK54_RS12325	0.15	-1.8
2,742,920	+		LRK54_RS12325	0.15	+0.4
2,742,920	+		LRK54_RS12325	0.15	+1.1
2,742,920	+		LRK54_RS12325	0.15	-0.3
2,742,920	+		LRK54_RS12325	0.15	-0.6
2,742,920	+		LRK54_RS12325	0.15	-0.9
2,742,920	+		LRK54_RS12325	0.15	+1.1
2,742,920	+		LRK54_RS12325	0.15	+0.3
2,742,920	+		LRK54_RS12325	0.15	+0.0
2,742,920	+		LRK54_RS12325	0.15	-1.5
2,742,920	+		LRK54_RS12325	0.15	+1.9
2,742,920	+		LRK54_RS12325	0.15	+0.5
2,742,920	+		LRK54_RS12325	0.15	-0.7
2,742,921	-		LRK54_RS12325	0.15	+0.6
2,742,921	-		LRK54_RS12325	0.15	+0.3
2,742,921	-		LRK54_RS12325	0.15	-1.9
2,742,921	-		LRK54_RS12325	0.15	+0.2
2,742,921	-		LRK54_RS12325	0.15	+0.3
2,742,921	-		LRK54_RS12325	0.15	+0.9
2,742,921	-		LRK54_RS12325	0.15	-1.2
2,742,921	-		LRK54_RS12325	0.15	+2.5
2,742,921	-		LRK54_RS12325	0.15	+0.5
2,742,921	-		LRK54_RS12325	0.15	+3.0
2,742,921	-		LRK54_RS12325	0.15	+1.5
2,742,921	-		LRK54_RS12325	0.15	-1.6
2,742,921	-		LRK54_RS12325	0.15	-0.2
2,742,921	-		LRK54_RS12325	0.15	+0.2
2,742,921	-		LRK54_RS12325	0.15	+0.2
2,742,921	-		LRK54_RS12325	0.15	+1.3
2,742,921	-		LRK54_RS12325	0.15	-0.9
2,742,921	-		LRK54_RS12325	0.15	-1.4
2,742,921	-		LRK54_RS12325	0.15	+2.6
2,742,921	-		LRK54_RS12325	0.15	+1.1
2,742,921	-		LRK54_RS12325	0.15	-0.2
2,742,921	-		LRK54_RS12325	0.15	-1.8
2,742,921	-		LRK54_RS12325	0.15	-0.7
2,742,921	-		LRK54_RS12325	0.15	+0.4
2,742,921	-		LRK54_RS12325	0.15	+0.2
2,742,921	-		LRK54_RS12325	0.15	+0.7
2,742,921	-		LRK54_RS12325	0.15	+0.4
2,742,921	-		LRK54_RS12325	0.15	+1.2
2,743,137	-		LRK54_RS12325	0.39	+1.0
2,743,688	+				-1.4
2,743,688	+				-0.5
2,743,688	+				-1.5
2,743,688	+				-0.2
2,743,688	+				+1.3
2,743,688	+				-0.0
2,743,688	+				+0.4
2,743,688	+				-1.6
2,743,688	+				-1.2
2,743,688	+				-1.8
2,743,688	+				+0.7
2,743,688	+				-0.5
2,743,688	+				-0.5
2,743,688	+				-0.4
2,743,688	+				-0.6
2,743,688	+				+0.1
2,743,688	+				+1.9
2,743,688	+				+0.5
2,743,688	+				+1.2
2,743,688	+				+1.8
2,743,688	+				+0.2
2,743,688	+				+0.1
2,743,688	+				-0.5
2,743,689	-				+0.7
2,743,689	-				+2.0
2,743,689	-				+0.0
2,743,689	-				+0.3
2,743,689	-				+1.3
2,743,689	-				+2.1
2,743,689	-				+1.0
2,743,689	-				-2.1
2,743,689	-				+1.1
2,743,689	-				+1.6
2,743,689	-				-0.3
2,743,689	-				-2.8
2,743,689	-				+0.5
2,743,713	+				+0.6
2,743,713	+				-0.4
2,743,713	+				+0.8
2,743,713	+				+1.5
2,743,713	+				+0.8
2,743,713	+				-0.8
2,743,713	+				-2.2
2,743,713	+				-0.6
2,743,713	+				+0.8
2,743,713	+				-0.2
2,743,713	+				-0.9
2,743,713	+				-0.3
2,743,713	+				+0.8
2,743,713	+				-0.0
2,743,713	+				+1.6
2,743,714	-				-0.7
2,743,714	-				+1.1
2,743,714	-				+2.9
2,743,714	-				+1.5
2,743,714	-				-1.1
2,743,714	-				-0.8
2,743,714	-				+1.5
2,743,714	-				-0.5
2,743,714	-				+2.6
2,743,714	-				-1.3
2,743,714	-				-1.4
2,743,714	-				+0.5
2,743,827	+		LRK54_RS12330	0.20	+1.3
2,743,827	+		LRK54_RS12330	0.20	+0.2
2,743,827	+		LRK54_RS12330	0.20	+1.3
2,743,827	+		LRK54_RS12330	0.20	+2.4
2,743,828	-		LRK54_RS12330	0.20	-1.2
2,744,175	+		LRK54_RS12330	0.81	-0.3
2,744,176	-		LRK54_RS12330	0.81	+0.3
2,744,176	-		LRK54_RS12330	0.81	+0.8
2,744,256	+				-0.9
2,744,256	+				+0.4
2,744,256	+				+1.3
2,744,256	+				+2.4
2,744,256	+				-0.3
2,744,256	+				-0.7
2,744,256	+				-0.1
2,744,256	+				+0.2
2,744,256	+				+1.0
2,744,256	+				+0.2
2,744,256	+				-1.4
2,744,256	+				+0.4
2,744,256	+				-0.2
2,744,256	+				-1.1
2,744,256	+				-0.7
2,744,256	+				-1.0
2,744,256	+				-0.5
2,744,256	+				+0.1
2,744,256	+				+0.5
2,744,256	+				-1.7
2,744,256	+				-2.2
2,744,257	-				+1.0
2,744,257	-				+0.2
2,744,257	-				-0.7
2,744,257	-				+0.6
2,744,257	-				-1.2
2,744,257	-				-0.9
2,744,257	-				-1.3
2,744,257	-				+1.5
2,744,257	-				+0.4
2,744,257	-				-1.1
2,744,365	+		LRK54_RS12335	0.14	-0.6
2,744,365	+		LRK54_RS12335	0.14	-1.7
2,744,365	+		LRK54_RS12335	0.14	+0.4
2,744,365	+		LRK54_RS12335	0.14	-0.4
2,744,365	+		LRK54_RS12335	0.14	+1.8
2,744,365	+		LRK54_RS12335	0.14	-1.9
2,744,365	+		LRK54_RS12335	0.14	-0.7
2,744,365	+		LRK54_RS12335	0.14	-1.3
2,744,365	+		LRK54_RS12335	0.14	+0.6
2,744,365	+		LRK54_RS12335	0.14	-0.6
2,744,365	+		LRK54_RS12335	0.14	+1.4
2,744,365	+		LRK54_RS12335	0.14	-1.0
2,744,365	+		LRK54_RS12335	0.14	-0.5
2,744,366	-		LRK54_RS12335	0.14	+0.1
2,744,366	-		LRK54_RS12335	0.14	-1.2
2,744,366	-		LRK54_RS12335	0.14	-0.1
2,744,366	-		LRK54_RS12335	0.14	+0.6
2,744,366	-		LRK54_RS12335	0.14	-0.8
2,744,366	-		LRK54_RS12335	0.14	+0.8
2,744,366	-		LRK54_RS12335	0.14	-0.2
2,744,366	-		LRK54_RS12335	0.14	-2.3
2,744,366	-		LRK54_RS12335	0.14	+0.2
2,744,366	-		LRK54_RS12335	0.14	-1.2
2,744,395	+		LRK54_RS12335	0.19	-1.2
2,744,395	+		LRK54_RS12335	0.19	+1.0
2,744,395	+		LRK54_RS12335	0.19	+0.4
2,744,395	+		LRK54_RS12335	0.19	+1.8
2,744,395	+		LRK54_RS12335	0.19	-1.5
2,744,395	+		LRK54_RS12335	0.19	-0.1
2,744,395	+		LRK54_RS12335	0.19	+0.4
2,744,395	+		LRK54_RS12335	0.19	-1.5
2,744,395	+		LRK54_RS12335	0.19	+0.7
2,744,396	-		LRK54_RS12335	0.19	-0.3
2,744,396	-		LRK54_RS12335	0.19	+0.9
2,744,396	-		LRK54_RS12335	0.19	+1.2
2,744,396	-		LRK54_RS12335	0.19	+0.5
2,744,396	-		LRK54_RS12335	0.19	-1.4
2,744,464	+		LRK54_RS12335	0.30	-1.4
2,744,464	+		LRK54_RS12335	0.30	+1.6
2,744,464	+		LRK54_RS12335	0.30	-1.1
2,744,464	+		LRK54_RS12335	0.30	-0.6
2,744,464	+		LRK54_RS12335	0.30	-1.0
2,744,465	-		LRK54_RS12335	0.30	-1.0
2,744,465	-		LRK54_RS12335	0.30	+1.0
2,744,465	-		LRK54_RS12335	0.30	-0.6
2,744,465	-		LRK54_RS12335	0.30	+0.8
2,744,465	-		LRK54_RS12335	0.30	-1.3
2,744,465	-		LRK54_RS12335	0.30	+0.0
2,744,488	+		LRK54_RS12335	0.34	-0.3
2,744,488	+		LRK54_RS12335	0.34	+0.2
2,744,488	+		LRK54_RS12335	0.34	-0.0
2,744,489	-		LRK54_RS12335	0.34	+0.1
2,744,489	-		LRK54_RS12335	0.34	-1.3
2,744,489	-		LRK54_RS12335	0.34	+1.4
2,744,489	-		LRK54_RS12335	0.34	-0.7
2,744,489	-		LRK54_RS12335	0.34	-0.1
2,744,489	-		LRK54_RS12335	0.34	-0.2
2,744,599	+		LRK54_RS12335	0.53	+1.1
2,744,599	+		LRK54_RS12335	0.53	+0.2
2,744,599	+		LRK54_RS12335	0.53	-0.6
2,744,600	-		LRK54_RS12335	0.53	-0.6
2,744,620	+		LRK54_RS12335	0.56	-1.2
2,744,621	-		LRK54_RS12335	0.56	-2.4
2,744,638	+		LRK54_RS12335	0.59	-1.7
2,744,639	-		LRK54_RS12335	0.59	-1.9
2,744,639	-		LRK54_RS12335	0.59	-0.6
2,744,639	-		LRK54_RS12335	0.59	-0.3
2,744,680	+		LRK54_RS12335	0.66	-0.4
2,744,680	+		LRK54_RS12335	0.66	+0.1
2,744,680	+		LRK54_RS12335	0.66	-0.4
2,744,680	+		LRK54_RS12335	0.66	-0.8
2,744,680	+		LRK54_RS12335	0.66	-0.9
2,744,680	+		LRK54_RS12335	0.66	+0.0
2,744,680	+		LRK54_RS12335	0.66	-0.5
2,744,680	+		LRK54_RS12335	0.66	-1.1
2,744,680	+		LRK54_RS12335	0.66	-1.8
2,744,680	+		LRK54_RS12335	0.66	-0.4
2,744,680	+		LRK54_RS12335	0.66	+0.3
2,744,680	+		LRK54_RS12335	0.66	+0.8
2,744,680	+		LRK54_RS12335	0.66	-0.9
2,744,680	+		LRK54_RS12335	0.66	-2.3
2,744,681	-		LRK54_RS12335	0.66	-0.0
2,744,681	-		LRK54_RS12335	0.66	+0.8
2,744,681	-		LRK54_RS12335	0.66	+2.5
2,744,681	-		LRK54_RS12335	0.66	+0.8
2,744,681	-		LRK54_RS12335	0.66	-0.8
2,744,681	-		LRK54_RS12335	0.66	-1.7
2,744,681	-		LRK54_RS12335	0.66	-2.8
2,744,691	+		LRK54_RS12335	0.68	-1.2
2,744,691	+		LRK54_RS12335	0.68	-0.3
2,744,691	+		LRK54_RS12335	0.68	+0.9