Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS10425

Experiment: R2A with Nickel (II) chloride 0.3125 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Nickel (II) chloride 0.3125 mM
2,297,867	+		LRK54_RS10420	0.53	-1.2
2,297,867	+		LRK54_RS10420	0.53	+1.2
2,297,867	+		LRK54_RS10420	0.53	+0.4
2,297,867	+		LRK54_RS10420	0.53	+0.1
2,297,867	+		LRK54_RS10420	0.53	-0.8
2,297,867	+		LRK54_RS10420	0.53	+0.8
2,297,867	+		LRK54_RS10420	0.53	-1.1
2,297,867	+		LRK54_RS10420	0.53	+0.6
2,297,867	+		LRK54_RS10420	0.53	-0.2
2,297,867	+		LRK54_RS10420	0.53	+0.5
2,297,867	+		LRK54_RS10420	0.53	+0.1
2,297,867	+		LRK54_RS10420	0.53	+0.2
2,297,868	-		LRK54_RS10420	0.53	+1.2
2,297,868	-		LRK54_RS10420	0.53	+1.1
2,297,868	-		LRK54_RS10420	0.53	-1.8
2,297,868	-		LRK54_RS10420	0.53	-1.9
2,297,868	-		LRK54_RS10420	0.53	+0.8
2,297,868	-		LRK54_RS10420	0.53	-0.6
2,297,868	-		LRK54_RS10420	0.53	-1.4
2,297,868	-		LRK54_RS10420	0.53	+1.5
2,297,868	-		LRK54_RS10420	0.53	+1.2
2,297,868	-		LRK54_RS10420	0.53	+0.4
2,297,868	-		LRK54_RS10420	0.53	-2.2
2,297,868	-		LRK54_RS10420	0.53	-0.9
2,297,868	-		LRK54_RS10420	0.53	-0.6
2,297,868	-		LRK54_RS10420	0.53	+0.4
2,297,868	-		LRK54_RS10420	0.53	+0.1
2,297,868	-		LRK54_RS10420	0.53	-0.9
2,297,868	-		LRK54_RS10420	0.53	+1.2
2,297,868	-		LRK54_RS10420	0.53	-0.5
2,297,868	-		LRK54_RS10420	0.53	-0.4
2,297,868	-		LRK54_RS10420	0.53	+0.6
2,297,868	-		LRK54_RS10420	0.53	-1.0
2,297,868	-		LRK54_RS10420	0.53	-0.5
2,297,868	-		LRK54_RS10420	0.53	+0.3
2,297,876	+		LRK54_RS10420	0.54	+0.7
2,297,877	-		LRK54_RS10420	0.54	+0.1
2,297,877	-		LRK54_RS10420	0.54	+1.5
2,297,877	-		LRK54_RS10420	0.54	+0.3
2,297,877	-		LRK54_RS10420	0.54	+0.2
2,297,933	+		LRK54_RS10420	0.57	-1.6
2,297,934	-		LRK54_RS10420	0.57	+0.6
2,297,990	+		LRK54_RS10420	0.60	-2.1
2,297,999	+		LRK54_RS10420	0.61	+0.1
2,297,999	+		LRK54_RS10420	0.61	+1.5
2,298,000	-		LRK54_RS10420	0.61	+0.7
2,298,000	-		LRK54_RS10420	0.61	+0.8
2,298,017	+		LRK54_RS10420	0.62	+0.3
2,298,018	-		LRK54_RS10420	0.62	-2.8
2,298,018	-		LRK54_RS10420	0.62	+0.0
2,298,092	+		LRK54_RS10420	0.66	-0.3
2,298,092	+		LRK54_RS10420	0.66	+1.2
2,298,092	+		LRK54_RS10420	0.66	-1.3
2,298,093	-		LRK54_RS10420	0.66	-1.6
2,298,247	+		LRK54_RS10420	0.75	+0.5
2,298,248	-		LRK54_RS10420	0.75	-0.6
2,298,248	-		LRK54_RS10420	0.75	+2.4
2,298,248	-		LRK54_RS10420	0.75	-0.6
2,298,248	-		LRK54_RS10420	0.75	-0.4
2,298,251	+		LRK54_RS10420	0.75	+1.5
2,298,251	+		LRK54_RS10420	0.75	+2.0
2,298,251	+		LRK54_RS10420	0.75	+1.2
2,298,251	+		LRK54_RS10420	0.75	+1.2
2,298,251	+		LRK54_RS10420	0.75	+0.4
2,298,251	+		LRK54_RS10420	0.75	-0.0
2,298,251	+		LRK54_RS10420	0.75	-0.3
2,298,251	+		LRK54_RS10420	0.75	+0.7
2,298,251	+		LRK54_RS10420	0.75	-0.1
2,298,251	+		LRK54_RS10420	0.75	+0.1
2,298,251	+		LRK54_RS10420	0.75	+2.5
2,298,251	+		LRK54_RS10420	0.75	-1.1
2,298,251	+		LRK54_RS10420	0.75	+0.4
2,298,252	-		LRK54_RS10420	0.75	+0.1
2,298,252	-		LRK54_RS10420	0.75	+0.5
2,298,252	-		LRK54_RS10420	0.75	-2.6
2,298,252	-		LRK54_RS10420	0.75	-1.4
2,298,252	-		LRK54_RS10420	0.75	-0.6
2,298,252	-		LRK54_RS10420	0.75	+0.3
2,298,252	-		LRK54_RS10420	0.75	-0.2
2,298,252	-		LRK54_RS10420	0.75	-1.6
2,298,252	-		LRK54_RS10420	0.75	+0.1
2,298,252	-		LRK54_RS10420	0.75	-2.5
2,298,252	-		LRK54_RS10420	0.75	-0.3
2,298,252	-		LRK54_RS10420	0.75	-0.7
2,298,252	-		LRK54_RS10420	0.75	+1.3
2,298,252	-		LRK54_RS10420	0.75	+0.3
2,298,252	-		LRK54_RS10420	0.75	-0.8
2,298,425	+		LRK54_RS10420	0.86	-1.0
2,298,426	-		LRK54_RS10420	0.86	-0.6
2,298,426	-		LRK54_RS10420	0.86	-0.6
2,298,434	+		LRK54_RS10420	0.86	+1.5
2,298,434	+		LRK54_RS10420	0.86	+2.1
2,298,434	+		LRK54_RS10420	0.86	+2.5
2,298,434	+		LRK54_RS10420	0.86	-0.5
2,298,434	+		LRK54_RS10420	0.86	+1.1
2,298,434	+		LRK54_RS10420	0.86	+0.2
2,298,434	+		LRK54_RS10420	0.86	-0.7
2,298,434	+		LRK54_RS10420	0.86	+0.7
2,298,434	+		LRK54_RS10420	0.86	-1.7
2,298,434	+		LRK54_RS10420	0.86	+0.6
2,298,434	+		LRK54_RS10420	0.86	-0.1
2,298,434	+		LRK54_RS10420	0.86	+0.7
2,298,434	+		LRK54_RS10420	0.86	+0.5
2,298,434	+		LRK54_RS10420	0.86	-1.7
2,298,434	+		LRK54_RS10420	0.86	-2.6
2,298,434	+		LRK54_RS10420	0.86	+0.1
2,298,434	+		LRK54_RS10420	0.86	-1.0
2,298,435	-		LRK54_RS10420	0.86	+0.5
2,298,435	-		LRK54_RS10420	0.86	+0.9
2,298,435	-		LRK54_RS10420	0.86	-1.2
2,298,435	-		LRK54_RS10420	0.86	-0.0
2,298,435	-		LRK54_RS10420	0.86	-0.4
2,298,435	-		LRK54_RS10420	0.86	-0.3
2,298,435	-		LRK54_RS10420	0.86	-0.3
2,298,435	-		LRK54_RS10420	0.86	+0.0
2,298,435	-		LRK54_RS10420	0.86	+1.7
2,298,435	-		LRK54_RS10420	0.86	-0.3
2,298,435	-		LRK54_RS10420	0.86	-0.6
2,298,435	-		LRK54_RS10420	0.86	+0.3
2,298,435	-		LRK54_RS10420	0.86	-2.4
2,298,435	-		LRK54_RS10420	0.86	-2.2
2,298,435	-		LRK54_RS10420	0.86	-0.4
2,298,435	-		LRK54_RS10420	0.86	-0.8
2,298,435	-		LRK54_RS10420	0.86	+1.7
2,298,435	-		LRK54_RS10420	0.86	-0.6
2,298,435	-		LRK54_RS10420	0.86	+0.9
2,298,435	-		LRK54_RS10420	0.86	+2.0
2,298,435	-		LRK54_RS10420	0.86	-0.7
2,298,435	-		LRK54_RS10420	0.86	-2.2
2,298,435	-		LRK54_RS10420	0.86	-0.4
2,298,437	+		LRK54_RS10420	0.86	-0.9
2,298,437	+		LRK54_RS10420	0.86	-0.6
2,298,437	+		LRK54_RS10420	0.86	-0.4
2,298,437	+		LRK54_RS10420	0.86	-0.9
2,298,437	+		LRK54_RS10420	0.86	-0.9
2,298,437	+		LRK54_RS10420	0.86	+0.5
2,298,437	+		LRK54_RS10420	0.86	-0.6
2,298,437	+		LRK54_RS10420	0.86	+1.1
2,298,437	+		LRK54_RS10420	0.86	-0.2
2,298,437	+		LRK54_RS10420	0.86	-0.6
2,298,437	+		LRK54_RS10420	0.86	+0.6
2,298,437	+		LRK54_RS10420	0.86	+0.0
2,298,437	+		LRK54_RS10420	0.86	+0.2
2,298,437	+		LRK54_RS10420	0.86	-0.1
2,298,437	+		LRK54_RS10420	0.86	-0.5
2,298,437	+		LRK54_RS10420	0.86	-2.2
2,298,437	+		LRK54_RS10420	0.86	+1.0
2,298,438	-		LRK54_RS10420	0.86	-0.8
2,298,438	-		LRK54_RS10420	0.86	+0.6
2,298,438	-		LRK54_RS10420	0.86	+0.8
2,298,438	-		LRK54_RS10420	0.86	-0.9
2,298,438	-		LRK54_RS10420	0.86	+1.7
2,298,438	-		LRK54_RS10420	0.86	+0.0
2,298,438	-		LRK54_RS10420	0.86	-1.8
2,298,438	-		LRK54_RS10420	0.86	+2.4
2,298,438	-		LRK54_RS10420	0.86	-2.4
2,298,438	-		LRK54_RS10420	0.86	+0.2
2,298,438	-		LRK54_RS10420	0.86	-1.5
2,298,438	-		LRK54_RS10420	0.86	+0.4
2,298,438	-		LRK54_RS10420	0.86	+1.2
2,298,438	-		LRK54_RS10420	0.86	+0.7
2,298,438	-		LRK54_RS10420	0.86	-1.1
2,298,438	-		LRK54_RS10420	0.86	+1.7
2,298,438	-		LRK54_RS10420	0.86	+1.5
2,298,438	-		LRK54_RS10420	0.86	-2.1
2,298,438	-		LRK54_RS10420	0.86	+0.1
2,298,438	-		LRK54_RS10420	0.86	-0.8
2,298,438	-		LRK54_RS10420	0.86	-1.4
2,298,479	+		LRK54_RS10420	0.89	+0.1
2,298,479	+		LRK54_RS10420	0.89	+0.1
2,298,548	+				-0.0
2,298,548	+				-0.8
2,298,548	+				+0.2
2,298,548	+				-1.2
2,298,548	+				-0.3
2,298,549	-				-0.0
2,298,549	-				-2.0
2,298,549	-				-0.3
2,298,549	-				-1.9
2,298,593	+				+1.5
2,298,594	-				-0.8
2,298,629	+				+0.1
2,298,629	+				-2.6
2,298,630	-				-0.2
2,298,630	-				+1.4
2,298,630	-				+0.5
2,298,630	-				+1.7
2,298,630	-				-0.2
2,298,630	-				-1.3
2,298,662	+				-0.9
2,298,662	+				-0.4
2,298,662	+				-2.7
2,298,662	+				-0.4
2,298,662	+				-0.6
2,298,662	+				-0.3
2,298,663	-				-0.2
2,298,663	-				-0.4
2,298,663	-				+0.3
2,298,663	-				+0.4
2,299,006	+		LRK54_RS10425	0.72	+0.6
2,299,006	+		LRK54_RS10425	0.72	-0.3
2,299,007	-		LRK54_RS10425	0.72	+0.8
2,299,007	-		LRK54_RS10425	0.72	-0.1
2,299,018	+		LRK54_RS10425	0.76	-0.2
2,299,018	+		LRK54_RS10425	0.76	-0.2
2,299,018	+		LRK54_RS10425	0.76	+1.0
2,299,018	+		LRK54_RS10425	0.76	+0.6
2,299,018	+		LRK54_RS10425	0.76	-0.2
2,299,018	+		LRK54_RS10425	0.76	-0.2
2,299,018	+		LRK54_RS10425	0.76	-3.3
2,299,018	+		LRK54_RS10425	0.76	-3.1
2,299,018	+		LRK54_RS10425	0.76	-0.2
2,299,018	+		LRK54_RS10425	0.76	-1.6
2,299,018	+		LRK54_RS10425	0.76	+0.7
2,299,018	+		LRK54_RS10425	0.76	-0.8
2,299,019	-		LRK54_RS10425	0.77	-1.9
2,299,019	-		LRK54_RS10425	0.77	+0.3
2,299,019	-		LRK54_RS10425	0.77	-1.9
2,299,019	-		LRK54_RS10425	0.77	+0.2
2,299,019	-		LRK54_RS10425	0.77	-1.5
2,299,019	-		LRK54_RS10425	0.77	+0.6
2,299,019	-		LRK54_RS10425	0.77	+0.2
2,299,019	-		LRK54_RS10425	0.77	-1.4
2,299,019	-		LRK54_RS10425	0.77	+0.8
2,299,019	-		LRK54_RS10425	0.77	-0.4
2,299,019	-		LRK54_RS10425	0.77	-1.4
2,299,019	-		LRK54_RS10425	0.77	-0.7
2,299,019	-		LRK54_RS10425	0.77	-1.1
2,299,019	-		LRK54_RS10425	0.77	-1.3
2,299,019	-		LRK54_RS10425	0.77	-1.8
2,299,019	-		LRK54_RS10425	0.77	-1.3
2,299,019	-		LRK54_RS10425	0.77	+0.2
2,299,047	+		LRK54_RS10425	0.87	-1.9
2,299,048	-		LRK54_RS10425	0.88	-2.5
2,299,082	+				-0.3
2,299,082	+				-0.2
2,299,082	+				-0.6
2,299,082	+				-1.8
2,299,082	+				+0.4
2,299,082	+				-2.4
2,299,082	+				-1.0
2,299,082	+				-0.9
2,299,082	+				-2.0
2,299,083	-				+2.1
2,299,083	-				+0.5
2,299,083	-				-1.0
2,299,083	-				+0.3
2,299,083	-				-0.7
2,299,083	-				+3.0
2,299,083	-				-1.7
2,299,083	-				-1.1
2,299,466	+		LRK54_RS10430	0.19	-0.0
2,299,467	-		LRK54_RS10430	0.19	-0.1
2,299,514	+		LRK54_RS10430	0.21	+0.5
2,299,514	+		LRK54_RS10430	0.21	-0.4
2,299,514	+		LRK54_RS10430	0.21	+0.4
2,299,514	+		LRK54_RS10430	0.21	-0.5
2,299,514	+		LRK54_RS10430	0.21	-1.2
2,299,514	+		LRK54_RS10430	0.21	-0.2
2,299,514	+		LRK54_RS10430	0.21	-0.5
2,299,515	-		LRK54_RS10430	0.21	+0.1
2,299,515	-		LRK54_RS10430	0.21	+1.1
2,299,515	-		LRK54_RS10430	0.21	+0.9
2,299,515	-		LRK54_RS10430	0.21	-0.0
2,299,515	-		LRK54_RS10430	0.21	-1.0
2,299,592	+		LRK54_RS10430	0.26	+0.4
2,299,592	+		LRK54_RS10430	0.26	-0.9
2,299,592	+		LRK54_RS10430	0.26	-1.1
2,299,592	+		LRK54_RS10430	0.26	-2.1
2,299,592	+		LRK54_RS10430	0.26	+1.2
2,299,592	+		LRK54_RS10430	0.26	-0.5
2,299,593	-		LRK54_RS10430	0.26	+0.1
2,299,593	-		LRK54_RS10430	0.26	+1.5
2,299,593	-		LRK54_RS10430	0.26	-0.9
2,299,745	+		LRK54_RS10430	0.34	-0.6
2,299,745	+		LRK54_RS10430	0.34	+1.3
2,299,745	+		LRK54_RS10430	0.34	-1.9
2,299,745	+		LRK54_RS10430	0.34	-1.3
2,299,745	+		LRK54_RS10430	0.34	-1.2
2,299,745	+		LRK54_RS10430	0.34	-1.2
2,299,745	+		LRK54_RS10430	0.34	+1.0
2,299,745	+		LRK54_RS10430	0.34	-0.7
2,299,745	+		LRK54_RS10430	0.34	+1.2
2,299,745	+		LRK54_RS10430	0.34	-2.8
2,299,745	+		LRK54_RS10430	0.34	-1.5
2,299,746	-		LRK54_RS10430	0.35	-1.3
2,299,746	-		LRK54_RS10430	0.35	-2.3
2,299,746	-		LRK54_RS10430	0.35	-0.7
2,299,746	-		LRK54_RS10430	0.35	+0.2
2,299,746	-		LRK54_RS10430	0.35	-0.9
2,299,746	-		LRK54_RS10430	0.35	-0.2
2,299,746	-		LRK54_RS10430	0.35	+0.6
2,299,746	-		LRK54_RS10430	0.35	-1.6
2,299,746	-		LRK54_RS10430	0.35	+1.1
2,299,746	-		LRK54_RS10430	0.35	-0.1
2,299,746	-		LRK54_RS10430	0.35	+2.3
2,299,925	+		LRK54_RS10430	0.45	-0.3
2,299,925	+		LRK54_RS10430	0.45	-2.1
2,299,925	+		LRK54_RS10430	0.45	-2.8
2,299,925	+		LRK54_RS10430	0.45	-2.0
2,299,925	+		LRK54_RS10430	0.45	-0.7
2,299,926	-		LRK54_RS10430	0.45	+0.4
2,299,926	-		LRK54_RS10430	0.45	-0.2
2,299,926	-		LRK54_RS10430	0.45	+0.8
2,300,003	+		LRK54_RS10430	0.49	-0.9
2,300,003	+		LRK54_RS10430	0.49	+0.2
2,300,003	+		LRK54_RS10430	0.49	+0.5
2,300,003	+		LRK54_RS10430	0.49	+1.6
2,300,003	+		LRK54_RS10430	0.49	-0.1
2,300,003	+		LRK54_RS10430	0.49	-0.5
2,300,003	+		LRK54_RS10430	0.49	-0.1
2,300,003	+		LRK54_RS10430	0.49	+0.5
2,300,003	+		LRK54_RS10430	0.49	+0.7
2,300,003	+		LRK54_RS10430	0.49	-2.0
2,300,003	+		LRK54_RS10430	0.49	-2.1
2,300,003	+		LRK54_RS10430	0.49	-1.0
2,300,003	+		LRK54_RS10430	0.49	+0.4
2,300,003	+		LRK54_RS10430	0.49	-1.7
2,300,003	+		LRK54_RS10430	0.49	-1.3
2,300,003	+		LRK54_RS10430	0.49	-0.0
2,300,003	+		LRK54_RS10430	0.49	-2.3
2,300,003	+		LRK54_RS10430	0.49	-1.4
2,300,003	+		LRK54_RS10430	0.49	+1.5
2,300,003	+		LRK54_RS10430	0.49	+0.2
2,300,003	+		LRK54_RS10430	0.49	+2.7
2,300,003	+		LRK54_RS10430	0.49	+0.9
2,300,003	+		LRK54_RS10430	0.49	-1.5
2,300,003	+		LRK54_RS10430	0.49	+1.0
2,300,003	+		LRK54_RS10430	0.49	-1.1
2,300,003	+		LRK54_RS10430	0.49	-1.6
2,300,003	+		LRK54_RS10430	0.49	-0.4
2,300,003	+		LRK54_RS10430	0.49	+1.9
2,300,003	+		LRK54_RS10430	0.49	-1.4
2,300,003	+		LRK54_RS10430	0.49	+0.7
2,300,003	+		LRK54_RS10430	0.49	-3.5
2,300,003	+		LRK54_RS10430	0.49	-1.8
2,300,003	+		LRK54_RS10430	0.49	+1.8
2,300,003	+		LRK54_RS10430	0.49	+1.0
2,300,003	+		LRK54_RS10430	0.49	-0.6
2,300,003	+		LRK54_RS10430	0.49	-0.6
2,300,003	+		LRK54_RS10430	0.49	+0.8
2,300,003	+		LRK54_RS10430	0.49	+1.3
2,300,003	+		LRK54_RS10430	0.49	+0.8
2,300,003	+		LRK54_RS10430	0.49	+0.8
2,300,003	+		LRK54_RS10430	0.49	+0.3
2,300,003	+		LRK54_RS10430	0.49	+0.2
2,300,003	+		LRK54_RS10430	0.49	-1.9
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2,300,004	-		LRK54_RS10430	0.49	-0.5
2,300,004	-		LRK54_RS10430	0.49	-0.7
2,300,004	-		LRK54_RS10430	0.49	-0.3
2,300,004	-		LRK54_RS10430	0.49	+2.6
2,300,004	-		LRK54_RS10430	0.49	-0.3
2,300,004	-		LRK54_RS10430	0.49	-3.0
2,300,004	-		LRK54_RS10430	0.49	-0.9
2,300,004	-		LRK54_RS10430	0.49	-2.6
2,300,004	-		LRK54_RS10430	0.49	-0.6
2,300,004	-		LRK54_RS10430	0.49	-0.1
2,300,004	-		LRK54_RS10430	0.49	-0.7
2,300,004	-		LRK54_RS10430	0.49	+1.4
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2,300,004	-		LRK54_RS10430	0.49	-0.6
2,300,004	-		LRK54_RS10430	0.49	+0.3
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2,300,004	-		LRK54_RS10430	0.49	-0.1
2,300,004	-		LRK54_RS10430	0.49	-0.7
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2,300,004	-		LRK54_RS10430	0.49	-1.0
2,300,004	-		LRK54_RS10430	0.49	-3.0
2,300,004	-		LRK54_RS10430	0.49	-0.1
2,300,004	-		LRK54_RS10430	0.49	+0.9
2,300,004	-		LRK54_RS10430	0.49	+1.1
2,300,004	-		LRK54_RS10430	0.49	-0.6
2,300,004	-		LRK54_RS10430	0.49	-0.4
2,300,004	-		LRK54_RS10430	0.49	-0.5
2,300,004	-		LRK54_RS10430	0.49	-2.1
2,300,004	-		LRK54_RS10430	0.49	+0.7
2,300,004	-		LRK54_RS10430	0.49	+0.0
2,300,004	-		LRK54_RS10430	0.49	-0.9
2,300,004	-		LRK54_RS10430	0.49	+1.0
2,300,004	-		LRK54_RS10430	0.49	-0.3
2,300,004	-		LRK54_RS10430	0.49	+0.3
2,300,004	-		LRK54_RS10430	0.49	-1.9