Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS08770

Experiment: R2A with Nickel (II) chloride 0.3125 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Nickel (II) chloride 0.3125 mM
1,909,484	+		LRK54_RS08760	0.84	+1.0
1,909,485	-		LRK54_RS08760	0.84	+0.4
1,909,563	-				-2.3
1,909,563	-				-0.8
1,909,563	-				-0.3
1,909,563	-				+0.6
1,909,563	-				-0.0
1,909,685	+				+0.3
1,909,686	-				+0.2
1,909,749	-				+0.6
1,909,749	-				-1.3
1,909,749	-				+0.3
1,909,749	-				-1.7
1,909,828	+		LRK54_RS08765	0.19	-0.7
1,909,829	-		LRK54_RS08765	0.19	+0.2
1,909,829	-		LRK54_RS08765	0.19	+1.3
1,909,895	+		LRK54_RS08765	0.28	+0.7
1,909,895	+		LRK54_RS08765	0.28	+1.0
1,909,895	+		LRK54_RS08765	0.28	+0.3
1,909,895	+		LRK54_RS08765	0.28	+2.2
1,909,896	-		LRK54_RS08765	0.28	+0.0
1,909,896	-		LRK54_RS08765	0.28	+1.9
1,909,896	-		LRK54_RS08765	0.28	-0.1
1,909,896	-		LRK54_RS08765	0.28	-0.8
1,909,896	-		LRK54_RS08765	0.28	-0.1
1,909,896	-		LRK54_RS08765	0.28	+0.3
1,909,921	+		LRK54_RS08765	0.32	+0.1
1,909,921	+		LRK54_RS08765	0.32	-1.2
1,909,921	+		LRK54_RS08765	0.32	+2.6
1,909,921	+		LRK54_RS08765	0.32	-2.0
1,909,921	+		LRK54_RS08765	0.32	-0.4
1,909,921	+		LRK54_RS08765	0.32	+1.2
1,909,921	+		LRK54_RS08765	0.32	-0.8
1,909,921	+		LRK54_RS08765	0.32	+1.8
1,909,921	+		LRK54_RS08765	0.32	-0.5
1,909,922	-		LRK54_RS08765	0.32	-0.4
1,909,922	-		LRK54_RS08765	0.32	-1.1
1,909,922	-		LRK54_RS08765	0.32	-0.0
1,909,978	+		LRK54_RS08765	0.39	-0.1
1,909,978	+		LRK54_RS08765	0.39	+2.0
1,909,978	+		LRK54_RS08765	0.39	+1.5
1,909,978	+		LRK54_RS08765	0.39	-0.0
1,909,978	+		LRK54_RS08765	0.39	+0.1
1,909,978	+		LRK54_RS08765	0.39	+0.6
1,909,978	+		LRK54_RS08765	0.39	-2.7
1,909,978	+		LRK54_RS08765	0.39	+0.9
1,909,978	+		LRK54_RS08765	0.39	-0.4
1,909,978	+		LRK54_RS08765	0.39	+1.1
1,909,978	+		LRK54_RS08765	0.39	+0.1
1,909,978	+		LRK54_RS08765	0.39	-0.8
1,909,978	+		LRK54_RS08765	0.39	-0.6
1,909,978	+		LRK54_RS08765	0.39	+0.8
1,909,978	+		LRK54_RS08765	0.39	+0.5
1,909,978	+		LRK54_RS08765	0.39	+1.0
1,909,978	+		LRK54_RS08765	0.39	+1.1
1,909,978	+		LRK54_RS08765	0.39	-3.0
1,909,978	+		LRK54_RS08765	0.39	+0.1
1,909,978	+		LRK54_RS08765	0.39	-0.6
1,909,978	+		LRK54_RS08765	0.39	+0.6
1,909,979	-		LRK54_RS08765	0.40	+1.3
1,909,979	-		LRK54_RS08765	0.40	-1.3
1,909,979	-		LRK54_RS08765	0.40	-1.8
1,909,979	-		LRK54_RS08765	0.40	+1.0
1,909,979	-		LRK54_RS08765	0.40	-0.2
1,909,979	-		LRK54_RS08765	0.40	-1.1
1,909,979	-		LRK54_RS08765	0.40	-0.2
1,909,979	-		LRK54_RS08765	0.40	+0.7
1,909,979	-		LRK54_RS08765	0.40	+1.5
1,909,979	-		LRK54_RS08765	0.40	+0.6
1,910,120	-		LRK54_RS08765	0.59	+0.7
1,910,120	-		LRK54_RS08765	0.59	+0.2
1,910,140	+		LRK54_RS08765	0.62	+0.5
1,910,141	-		LRK54_RS08765	0.62	+0.1
1,910,152	+		LRK54_RS08765	0.64	+1.3
1,910,152	+		LRK54_RS08765	0.64	+1.8
1,910,152	+		LRK54_RS08765	0.64	+0.7
1,910,152	+		LRK54_RS08765	0.64	-0.9
1,910,152	+		LRK54_RS08765	0.64	+0.2
1,910,153	-		LRK54_RS08765	0.64	+1.3
1,910,153	-		LRK54_RS08765	0.64	+1.8
1,910,153	-		LRK54_RS08765	0.64	+1.0
1,910,153	-		LRK54_RS08765	0.64	+0.2
1,910,153	-		LRK54_RS08765	0.64	+1.0
1,910,153	-		LRK54_RS08765	0.64	+0.6
1,910,221	+		LRK54_RS08765	0.73	-0.4
1,910,221	+		LRK54_RS08765	0.73	-0.4
1,910,221	+		LRK54_RS08765	0.73	-0.7
1,910,221	+		LRK54_RS08765	0.73	+0.3
1,910,221	+		LRK54_RS08765	0.73	-1.1
1,910,221	+		LRK54_RS08765	0.73	+0.4
1,910,221	+		LRK54_RS08765	0.73	+0.3
1,910,222	-		LRK54_RS08765	0.74	-0.5
1,910,222	-		LRK54_RS08765	0.74	+1.9
1,910,222	-		LRK54_RS08765	0.74	+3.2
1,910,222	-		LRK54_RS08765	0.74	+1.2
1,910,222	-		LRK54_RS08765	0.74	-0.7
1,910,222	-		LRK54_RS08765	0.74	-0.4
1,910,222	-		LRK54_RS08765	0.74	-0.8
1,910,257	+		LRK54_RS08765	0.78	+1.5
1,910,257	+		LRK54_RS08765	0.78	+0.7
1,910,257	+		LRK54_RS08765	0.78	-0.6
1,910,257	+		LRK54_RS08765	0.78	+0.7
1,910,258	-		LRK54_RS08765	0.79	+0.0
1,910,258	-		LRK54_RS08765	0.79	-0.2
1,910,258	-		LRK54_RS08765	0.79	-1.3
1,910,258	-		LRK54_RS08765	0.79	-1.3
1,910,269	+		LRK54_RS08765	0.80	-0.3
1,910,502	+				+0.6
1,910,502	+				+0.4
1,910,502	+				-0.0
1,910,502	+				-0.6
1,910,502	+				-0.9
1,910,502	+				+0.7
1,910,502	+				+1.2
1,910,502	+				-0.8
1,910,503	-				-0.2
1,910,503	-				-0.0
1,910,503	-				+0.1
1,910,503	-				+0.5
1,910,503	-				+1.4
1,910,503	-				+1.1
1,910,503	-				+1.4
1,910,503	-				-1.9
1,910,503	-				-0.3
1,910,503	-				+0.8
1,910,503	-				+1.3
1,910,625	+		LRK54_RS08770	0.16	-2.2
1,910,625	+		LRK54_RS08770	0.16	-0.7
1,910,625	+		LRK54_RS08770	0.16	+1.8
1,910,626	-		LRK54_RS08770	0.16	-0.3
1,910,626	-		LRK54_RS08770	0.16	-1.6
1,910,626	-		LRK54_RS08770	0.16	-0.7
1,910,757	+		LRK54_RS08770	0.25	-0.7
1,910,757	+		LRK54_RS08770	0.25	-0.6
1,910,757	+		LRK54_RS08770	0.25	-0.3
1,910,757	+		LRK54_RS08770	0.25	+0.3
1,910,757	+		LRK54_RS08770	0.25	+0.3
1,910,757	+		LRK54_RS08770	0.25	+0.7
1,910,757	+		LRK54_RS08770	0.25	+0.5
1,910,757	+		LRK54_RS08770	0.25	-1.0
1,910,757	+		LRK54_RS08770	0.25	+1.1
1,910,757	+		LRK54_RS08770	0.25	-0.2
1,910,757	+		LRK54_RS08770	0.25	-1.7
1,910,757	+		LRK54_RS08770	0.25	+1.2
1,910,758	-		LRK54_RS08770	0.25	+0.6
1,910,758	-		LRK54_RS08770	0.25	-0.7
1,910,758	-		LRK54_RS08770	0.25	+0.4
1,910,758	-		LRK54_RS08770	0.25	+0.2
1,910,758	-		LRK54_RS08770	0.25	-0.0
1,910,758	-		LRK54_RS08770	0.25	+0.3
1,910,758	-		LRK54_RS08770	0.25	-1.8
1,910,758	-		LRK54_RS08770	0.25	-0.9
1,910,758	-		LRK54_RS08770	0.25	+1.0
1,910,758	-		LRK54_RS08770	0.25	-0.3
1,911,147	+		LRK54_RS08770	0.53	-0.9
1,911,147	+		LRK54_RS08770	0.53	-1.0
1,911,148	-		LRK54_RS08770	0.53	+0.6
1,911,148	-		LRK54_RS08770	0.53	-0.6
1,911,210	+		LRK54_RS08770	0.57	-0.6
1,911,211	-		LRK54_RS08770	0.57	+0.3
1,911,211	-		LRK54_RS08770	0.57	-0.1
1,911,258	+		LRK54_RS08770	0.61	-0.7
1,911,258	+		LRK54_RS08770	0.61	-1.3
1,911,258	+		LRK54_RS08770	0.61	-0.6
1,911,258	+		LRK54_RS08770	0.61	-1.1
1,911,258	+		LRK54_RS08770	0.61	+0.1
1,911,258	+		LRK54_RS08770	0.61	+0.9
1,911,258	+		LRK54_RS08770	0.61	+0.7
1,911,258	+		LRK54_RS08770	0.61	-0.1
1,911,258	+		LRK54_RS08770	0.61	+2.5
1,911,258	+		LRK54_RS08770	0.61	+1.3
1,911,258	+		LRK54_RS08770	0.61	+1.7
1,911,258	+		LRK54_RS08770	0.61	-1.1
1,911,258	+		LRK54_RS08770	0.61	+2.5
1,911,258	+		LRK54_RS08770	0.61	-0.1
1,911,259	-		LRK54_RS08770	0.61	+1.4
1,911,259	-		LRK54_RS08770	0.61	-1.0
1,911,259	-		LRK54_RS08770	0.61	-1.0
1,911,259	-		LRK54_RS08770	0.61	-2.1
1,911,259	-		LRK54_RS08770	0.61	-0.3
1,911,259	-		LRK54_RS08770	0.61	+2.4
1,911,259	-		LRK54_RS08770	0.61	-1.7
1,911,259	-		LRK54_RS08770	0.61	-1.6
1,911,259	-		LRK54_RS08770	0.61	-1.4
1,911,259	-		LRK54_RS08770	0.61	+0.9
1,911,259	-		LRK54_RS08770	0.61	-0.5
1,911,259	-		LRK54_RS08770	0.61	-1.4
1,911,259	-		LRK54_RS08770	0.61	-1.6
1,911,291	+		LRK54_RS08770	0.63	-0.6
1,911,291	+		LRK54_RS08770	0.63	-2.0
1,911,291	+		LRK54_RS08770	0.63	-0.2
1,911,291	+		LRK54_RS08770	0.63	+0.2
1,911,291	+		LRK54_RS08770	0.63	-0.8
1,911,291	+		LRK54_RS08770	0.63	-1.5
1,911,292	-		LRK54_RS08770	0.63	-2.3
1,911,292	-		LRK54_RS08770	0.63	+0.7
1,911,292	-		LRK54_RS08770	0.63	-0.7
1,911,292	-		LRK54_RS08770	0.63	+1.3
1,911,292	-		LRK54_RS08770	0.63	-0.0
1,911,292	-		LRK54_RS08770	0.63	-0.1
1,911,292	-		LRK54_RS08770	0.63	+0.3
1,911,292	-		LRK54_RS08770	0.63	+0.4
1,911,292	-		LRK54_RS08770	0.63	-0.5
1,911,474	+		LRK54_RS08770	0.76	-0.0
1,911,474	+		LRK54_RS08770	0.76	+0.5
1,911,474	+		LRK54_RS08770	0.76	-1.3
1,911,474	+		LRK54_RS08770	0.76	-1.1
1,911,474	+		LRK54_RS08770	0.76	-0.9
1,911,474	+		LRK54_RS08770	0.76	-0.9
1,911,474	+		LRK54_RS08770	0.76	-0.7
1,911,475	-		LRK54_RS08770	0.76	-0.4
1,911,475	-		LRK54_RS08770	0.76	+1.2
1,911,475	-		LRK54_RS08770	0.76	+1.7
1,911,540	+		LRK54_RS08770	0.81	-0.5
1,911,540	+		LRK54_RS08770	0.81	+1.3
1,911,540	+		LRK54_RS08770	0.81	-1.8
1,911,540	+		LRK54_RS08770	0.81	+0.5
1,911,540	+		LRK54_RS08770	0.81	+1.4
1,911,540	+		LRK54_RS08770	0.81	+0.2
1,911,540	+		LRK54_RS08770	0.81	-0.1
1,911,541	-		LRK54_RS08770	0.81	-0.6
1,911,541	-		LRK54_RS08770	0.81	+0.7
1,911,541	-		LRK54_RS08770	0.81	+0.9
1,911,541	-		LRK54_RS08770	0.81	-0.0
1,911,555	+		LRK54_RS08770	0.82	-0.9
1,911,555	+		LRK54_RS08770	0.82	-0.5
1,911,555	+		LRK54_RS08770	0.82	-1.5
1,911,555	+		LRK54_RS08770	0.82	-2.6
1,911,555	+		LRK54_RS08770	0.82	+0.5
1,911,555	+		LRK54_RS08770	0.82	-2.4
1,911,555	+		LRK54_RS08770	0.82	+0.9
1,911,555	+		LRK54_RS08770	0.82	-0.6
1,911,555	+		LRK54_RS08770	0.82	+0.8
1,911,555	+		LRK54_RS08770	0.82	+1.6
1,911,555	+		LRK54_RS08770	0.82	-0.5
1,911,555	+		LRK54_RS08770	0.82	-2.1
1,911,555	+		LRK54_RS08770	0.82	-1.4
1,911,555	+		LRK54_RS08770	0.82	-0.5
1,911,555	+		LRK54_RS08770	0.82	+0.5
1,911,555	+		LRK54_RS08770	0.82	-1.3
1,911,555	+		LRK54_RS08770	0.82	+0.9
1,911,555	+		LRK54_RS08770	0.82	+0.5
1,911,555	+		LRK54_RS08770	0.82	-1.5
1,911,555	+		LRK54_RS08770	0.82	+0.6
1,911,556	-		LRK54_RS08770	0.82	+1.8
1,911,556	-		LRK54_RS08770	0.82	+0.4
1,911,556	-		LRK54_RS08770	0.82	+0.2
1,911,556	-		LRK54_RS08770	0.82	-0.9
1,911,556	-		LRK54_RS08770	0.82	-1.5
1,911,556	-		LRK54_RS08770	0.82	-2.4
1,911,556	-		LRK54_RS08770	0.82	-0.5
1,911,556	-		LRK54_RS08770	0.82	+0.1
1,911,556	-		LRK54_RS08770	0.82	+1.2
1,911,556	-		LRK54_RS08770	0.82	+1.3
1,911,557	-		LRK54_RS08770	0.82	-1.0
1,911,560	+		LRK54_RS08770	0.82	-1.8
1,911,560	+		LRK54_RS08770	0.82	-1.4
1,911,560	+		LRK54_RS08770	0.82	-0.9
1,911,560	+		LRK54_RS08770	0.82	-1.5
1,911,560	+		LRK54_RS08770	0.82	+0.9
1,911,560	+		LRK54_RS08770	0.82	+1.4
1,911,560	+		LRK54_RS08770	0.82	-0.5
1,911,560	+		LRK54_RS08770	0.82	+0.7
1,911,560	+		LRK54_RS08770	0.82	-0.0
1,911,560	+		LRK54_RS08770	0.82	+1.1
1,911,560	+		LRK54_RS08770	0.82	-0.7
1,911,560	+		LRK54_RS08770	0.82	+0.5
1,911,561	-		LRK54_RS08770	0.82	+0.3
1,911,561	-		LRK54_RS08770	0.82	+0.9
1,911,561	-		LRK54_RS08770	0.82	+0.4
1,911,561	-		LRK54_RS08770	0.82	-1.3
1,911,561	-		LRK54_RS08770	0.82	-0.5
1,911,561	-		LRK54_RS08770	0.82	-0.9
1,911,561	-		LRK54_RS08770	0.82	+0.4
1,911,561	-		LRK54_RS08770	0.82	+0.9
1,911,561	-		LRK54_RS08770	0.82	-0.8
1,911,561	-		LRK54_RS08770	0.82	+0.2
1,911,561	-		LRK54_RS08770	0.82	-0.7
1,911,561	-		LRK54_RS08770	0.82	+0.8
1,911,561	-		LRK54_RS08770	0.82	-0.2
1,911,561	-		LRK54_RS08770	0.82	-1.4
1,911,561	-		LRK54_RS08770	0.82	+1.3
1,911,561	-		LRK54_RS08770	0.82	-0.3
1,911,561	-		LRK54_RS08770	0.82	+0.5
1,911,561	-		LRK54_RS08770	0.82	+0.6
1,911,561	-		LRK54_RS08770	0.82	+1.3
1,911,753	+				-0.8
1,911,753	+				+0.0
1,911,753	+				-1.2
1,911,753	+				-0.1
1,911,753	+				+1.3
1,911,753	+				-0.7
1,911,753	+				+1.0
1,911,753	+				+2.3
1,911,753	+				-2.0
1,911,753	+				-0.5
1,911,753	+				+0.2
1,911,754	-				+0.1
1,911,754	-				-0.4
1,911,754	-				+0.0
1,911,754	-				-1.4
1,911,754	-				-1.4
1,911,754	-				+2.4
1,911,754	-				+1.0
1,911,881	+				-1.1
1,911,882	-				+1.3
1,911,945	+				-1.1
1,911,945	+				+0.7
1,911,945	+				+1.3
1,911,945	+				+1.1
1,911,945	+				+0.4
1,911,945	+				+0.6
1,911,946	-				+0.6
1,911,946	-				-0.7
1,911,946	-				-0.6
1,911,946	-				+2.3
1,911,946	-				+2.3
1,911,946	-				-1.3
1,911,946	-				-1.1
1,911,957	+				+0.1
1,911,957	+				-0.3
1,911,957	+				-0.7
1,911,957	+				+1.2
1,911,957	+				+2.0
1,911,957	+				+0.9
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