Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS06925

Experiment: R2A with Nickel (II) chloride 0.3125 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Nickel (II) chloride 0.3125 mM
1,487,793	-		LRK54_RS06920	0.31	-1.0
1,487,816	+		LRK54_RS06920	0.33	+1.2
1,487,816	+		LRK54_RS06920	0.33	-2.1
1,487,816	+		LRK54_RS06920	0.33	+0.3
1,487,816	+		LRK54_RS06920	0.33	+2.0
1,487,816	+		LRK54_RS06920	0.33	+0.4
1,487,816	+		LRK54_RS06920	0.33	+0.3
1,487,816	+		LRK54_RS06920	0.33	+0.5
1,487,817	-		LRK54_RS06920	0.33	-0.9
1,487,817	-		LRK54_RS06920	0.33	-1.5
1,487,817	-		LRK54_RS06920	0.33	-0.7
1,487,817	-		LRK54_RS06920	0.33	-0.9
1,487,817	-		LRK54_RS06920	0.33	-1.4
1,487,817	-		LRK54_RS06920	0.33	+0.3
1,487,817	-		LRK54_RS06920	0.33	+2.5
1,487,817	-		LRK54_RS06920	0.33	-1.0
1,487,817	-		LRK54_RS06920	0.33	+0.9
1,487,817	-		LRK54_RS06920	0.33	+2.4
1,487,817	-		LRK54_RS06920	0.33	-1.1
1,487,817	-		LRK54_RS06920	0.33	+0.7
1,487,817	-		LRK54_RS06920	0.33	-0.8
1,487,817	-		LRK54_RS06920	0.33	+1.8
1,487,817	-		LRK54_RS06920	0.33	-0.0
1,487,894	+		LRK54_RS06920	0.40	-1.3
1,487,894	+		LRK54_RS06920	0.40	+0.4
1,487,894	+		LRK54_RS06920	0.40	-1.2
1,487,894	+		LRK54_RS06920	0.40	-0.7
1,487,894	+		LRK54_RS06920	0.40	+1.0
1,487,894	+		LRK54_RS06920	0.40	+0.3
1,487,894	+		LRK54_RS06920	0.40	-0.5
1,487,894	+		LRK54_RS06920	0.40	-1.7
1,487,895	-		LRK54_RS06920	0.40	+0.4
1,487,895	-		LRK54_RS06920	0.40	+0.9
1,487,895	-		LRK54_RS06920	0.40	+0.2
1,488,290	+		LRK54_RS06920	0.73	-0.4
1,488,290	+		LRK54_RS06920	0.73	+0.8
1,488,290	+		LRK54_RS06920	0.73	+0.3
1,488,290	+		LRK54_RS06920	0.73	-1.4
1,488,291	-		LRK54_RS06920	0.73	-0.5
1,488,291	-		LRK54_RS06920	0.73	+1.0
1,488,362	+		LRK54_RS06920	0.80	-0.3
1,488,362	+		LRK54_RS06920	0.80	-0.9
1,488,362	+		LRK54_RS06920	0.80	-1.3
1,488,362	+		LRK54_RS06920	0.80	-0.6
1,488,362	+		LRK54_RS06920	0.80	-1.8
1,488,362	+		LRK54_RS06920	0.80	-0.6
1,488,362	+		LRK54_RS06920	0.80	+0.5
1,488,362	+		LRK54_RS06920	0.80	+0.5
1,488,362	+		LRK54_RS06920	0.80	-0.1
1,488,362	+		LRK54_RS06920	0.80	+2.1
1,488,363	-		LRK54_RS06920	0.80	+0.4
1,488,363	-		LRK54_RS06920	0.80	-2.6
1,488,363	-		LRK54_RS06920	0.80	+1.2
1,488,363	-		LRK54_RS06920	0.80	+1.4
1,488,363	-		LRK54_RS06920	0.80	-0.3
1,488,363	-		LRK54_RS06920	0.80	+1.1
1,488,570	-				+2.0
1,488,570	-				-0.6
1,488,570	-				+0.2
1,488,619	+				+0.1
1,488,619	+				-0.2
1,488,620	-				-0.4
1,488,620	-				-3.0
1,488,620	-				-0.2
1,488,648	+				+0.4
1,488,648	+				+0.3
1,488,648	+				+0.8
1,488,648	+				-0.6
1,488,648	+				-1.1
1,488,648	+				-2.0
1,488,648	+				+0.4
1,488,648	+				-2.0
1,488,648	+				+0.0
1,488,648	+				-0.8
1,488,648	+				+1.2
1,488,648	+				+0.1
1,488,648	+				-0.5
1,488,648	+				+0.3
1,488,648	+				-1.5
1,488,649	-				-0.1
1,488,649	-				-1.2
1,488,649	-				+1.1
1,488,649	-				-1.1
1,488,649	-				-0.9
1,488,649	-				-0.3
1,488,649	-				-0.8
1,488,649	-				-0.4
1,488,649	-				+0.2
1,488,649	-				-0.6
1,488,649	-				+0.3
1,488,649	-				-0.2
1,488,649	-				+0.3
1,488,701	+				-0.5
1,488,701	+				+2.2
1,488,701	+				+1.6
1,488,701	+				-1.4
1,488,701	+				+1.3
1,488,701	+				-1.7
1,488,701	+				-0.7
1,488,701	+				-0.3
1,488,701	+				-0.4
1,488,701	+				-0.3
1,488,701	+				-0.4
1,488,701	+				+0.4
1,488,701	+				-1.3
1,488,701	+				+0.2
1,488,701	+				-2.0
1,488,701	+				+0.9
1,488,701	+				+0.2
1,488,701	+				-2.2
1,488,701	+				+1.3
1,488,701	+				-0.9
1,488,701	+				+0.0
1,488,701	+				-0.5
1,488,701	+				+0.3
1,488,701	+				-1.1
1,488,701	+				-0.7
1,488,701	+				-1.3
1,488,701	+				-2.7
1,488,701	+				+1.4
1,488,701	+				-1.1
1,488,701	+				-0.3
1,488,701	+				+0.6
1,488,701	+				+1.0
1,488,701	+				+1.6
1,488,701	+				-1.6
1,488,701	+				+0.3
1,488,701	+				+1.5
1,488,701	+				+0.2
1,488,701	+				+0.0
1,488,701	+				-0.7
1,488,701	+				+1.6
1,488,701	+				+0.2
1,488,701	+				-0.5
1,488,701	+				-0.6
1,488,701	+				+0.6
1,488,702	-				+1.1
1,488,702	-				-0.1
1,488,702	-				+0.5
1,488,702	-				+0.6
1,488,702	-				-2.6
1,488,702	-				-0.6
1,488,702	-				+0.1
1,488,702	-				-1.6
1,488,702	-				-0.5
1,488,702	-				+1.2
1,488,702	-				-0.5
1,488,702	-				-0.2
1,488,702	-				-2.0
1,488,702	-				+0.6
1,488,702	-				+0.3
1,488,702	-				+1.4
1,488,702	-				+1.4
1,488,702	-				+0.1
1,488,702	-				-1.0
1,488,702	-				-1.8
1,488,702	-				+0.3
1,488,702	-				-0.3
1,488,702	-				-0.9
1,488,702	-				+1.0
1,488,702	-				+0.0
1,488,702	-				-1.4
1,488,702	-				-0.6
1,488,702	-				-1.8
1,488,702	-				-2.2
1,488,702	-				-0.2
1,488,702	-				-0.9
1,488,702	-				-0.4
1,488,702	-				+0.8
1,488,702	-				-0.2
1,488,702	-				-1.4
1,488,702	-				+0.3
1,488,702	-				-0.7
1,488,702	-				+0.7
1,488,702	-				+0.7
1,488,702	-				-0.9
1,488,702	-				+0.1
1,488,702	-				-0.9
1,488,702	-				-0.8
1,488,702	-				-1.1
1,488,702	-				-1.8
1,488,702	-				-1.6
1,488,702	-				+1.6
1,488,702	-				-2.5
1,488,702	-				-1.6
1,488,702	-				-1.8
1,488,702	-				-0.2
1,488,702	-				-1.1
1,488,702	-				+0.4
1,488,702	-				+0.8
1,488,702	-				+0.1
1,488,702	-				-0.8
1,488,709	+				+0.5
1,488,709	+				+0.3
1,488,709	+				+2.4
1,488,709	+				+1.3
1,488,709	+				-0.7
1,488,709	+				-0.3
1,488,709	+				+0.2
1,488,709	+				-2.2
1,488,709	+				-0.7
1,488,709	+				-0.8
1,488,709	+				-0.0
1,488,710	-				-0.3
1,488,710	-				-0.1
1,488,710	-				+0.5
1,488,710	-				-1.8
1,488,710	-				-1.1
1,488,710	-				+2.4
1,488,710	-				-0.8
1,488,710	-				-0.6
1,488,710	-				-2.1
1,488,850	+		LRK54_RS06925	0.23	+1.0
1,488,850	+		LRK54_RS06925	0.23	-2.1
1,488,850	+		LRK54_RS06925	0.23	+1.0
1,488,911	+		LRK54_RS06925	0.30	-2.7
1,488,912	-		LRK54_RS06925	0.30	-1.7
1,488,913	+		LRK54_RS06925	0.30	-1.4
1,488,913	+		LRK54_RS06925	0.30	+0.4
1,488,913	+		LRK54_RS06925	0.30	+0.5
1,488,914	-		LRK54_RS06925	0.30	+0.0
1,488,914	-		LRK54_RS06925	0.30	-1.7
1,488,914	-		LRK54_RS06925	0.30	-0.3
1,488,914	-		LRK54_RS06925	0.30	-0.6
1,488,914	-		LRK54_RS06925	0.30	-0.5
1,488,914	-		LRK54_RS06925	0.30	+1.8
1,488,914	-		LRK54_RS06925	0.30	-0.3
1,489,020	+		LRK54_RS06925	0.43	+1.2
1,489,020	+		LRK54_RS06925	0.43	-2.2
1,489,020	+		LRK54_RS06925	0.43	+2.2
1,489,020	+		LRK54_RS06925	0.43	+0.1
1,489,020	+		LRK54_RS06925	0.43	-0.7
1,489,020	+		LRK54_RS06925	0.43	-1.1
1,489,021	-		LRK54_RS06925	0.43	+0.7
1,489,021	-		LRK54_RS06925	0.43	-1.0
1,489,021	-		LRK54_RS06925	0.43	-0.5
1,489,021	-		LRK54_RS06925	0.43	-0.1
1,489,040	+		LRK54_RS06925	0.46	+0.5
1,489,040	+		LRK54_RS06925	0.46	+0.3
1,489,040	+		LRK54_RS06925	0.46	-2.0
1,489,041	-		LRK54_RS06925	0.46	-2.4
1,489,041	-		LRK54_RS06925	0.46	-1.3
1,489,041	-		LRK54_RS06925	0.46	+0.7
1,489,041	-		LRK54_RS06925	0.46	+3.1
1,489,041	-		LRK54_RS06925	0.46	+0.4
1,489,048	+		LRK54_RS06925	0.47	-0.7
1,489,048	+		LRK54_RS06925	0.47	-1.1
1,489,048	+		LRK54_RS06925	0.47	-0.8
1,489,048	+		LRK54_RS06925	0.47	+0.1
1,489,049	-		LRK54_RS06925	0.47	-2.2
1,489,087	+		LRK54_RS06925	0.51	+0.6
1,489,087	+		LRK54_RS06925	0.51	-2.5
1,489,087	+		LRK54_RS06925	0.51	+0.7
1,489,087	+		LRK54_RS06925	0.51	-0.7
1,489,087	+		LRK54_RS06925	0.51	+0.0
1,489,087	+		LRK54_RS06925	0.51	+0.1
1,489,088	-		LRK54_RS06925	0.51	+0.8
1,489,088	-		LRK54_RS06925	0.51	-1.2
1,489,088	-		LRK54_RS06925	0.51	-0.3
1,489,088	-		LRK54_RS06925	0.51	-0.2
1,489,120	+		LRK54_RS06925	0.55	-1.4
1,489,120	+		LRK54_RS06925	0.55	+0.1
1,489,120	+		LRK54_RS06925	0.55	-1.5
1,489,120	+		LRK54_RS06925	0.55	-2.2
1,489,121	-		LRK54_RS06925	0.55	-0.0
1,489,121	-		LRK54_RS06925	0.55	+1.0
1,489,121	-		LRK54_RS06925	0.55	-0.9
1,489,121	-		LRK54_RS06925	0.55	-0.1
1,489,121	-		LRK54_RS06925	0.55	-0.1
1,489,191	-		LRK54_RS06925	0.64	-0.5
1,489,216	+		LRK54_RS06925	0.67	-1.9
1,489,216	+		LRK54_RS06925	0.67	-2.7
1,489,216	+		LRK54_RS06925	0.67	+0.8
1,489,216	+		LRK54_RS06925	0.67	+0.5
1,489,216	+		LRK54_RS06925	0.67	-0.8
1,489,216	+		LRK54_RS06925	0.67	-0.5
1,489,217	-		LRK54_RS06925	0.67	-0.2
1,489,217	-		LRK54_RS06925	0.67	-0.8
1,489,217	-		LRK54_RS06925	0.67	+1.0
1,489,217	-		LRK54_RS06925	0.67	-1.2
1,489,217	-		LRK54_RS06925	0.67	+2.0
1,489,217	-		LRK54_RS06925	0.67	-2.7
1,489,217	-		LRK54_RS06925	0.67	-0.1
1,489,217	-		LRK54_RS06925	0.67	-0.8
1,489,217	-		LRK54_RS06925	0.67	-0.6
1,489,217	-		LRK54_RS06925	0.67	-0.1
1,489,244	+		LRK54_RS06925	0.70	+0.0
1,489,267	+		LRK54_RS06925	0.73	+0.4
1,489,267	+		LRK54_RS06925	0.73	+0.8
1,489,267	+		LRK54_RS06925	0.73	+0.3
1,489,267	+		LRK54_RS06925	0.73	+0.3
1,489,267	+		LRK54_RS06925	0.73	-0.7
1,489,267	+		LRK54_RS06925	0.73	-0.7
1,489,267	+		LRK54_RS06925	0.73	-0.8
1,489,267	+		LRK54_RS06925	0.73	-1.2
1,489,268	-		LRK54_RS06925	0.73	-0.4
1,489,268	-		LRK54_RS06925	0.73	-2.8
1,489,268	-		LRK54_RS06925	0.73	-2.7
1,489,268	-		LRK54_RS06925	0.73	-0.7
1,489,268	-		LRK54_RS06925	0.73	-0.4
1,489,268	-		LRK54_RS06925	0.73	+0.8
1,489,268	-		LRK54_RS06925	0.73	+0.4
1,489,302	+		LRK54_RS06925	0.77	+0.8
1,489,302	+		LRK54_RS06925	0.77	-0.9
1,489,302	+		LRK54_RS06925	0.77	+1.4
1,489,316	+		LRK54_RS06925	0.79	+1.0
1,489,316	+		LRK54_RS06925	0.79	+1.1
1,489,316	+		LRK54_RS06925	0.79	+1.1
1,489,316	+		LRK54_RS06925	0.79	+0.3
1,489,316	+		LRK54_RS06925	0.79	+1.6
1,489,316	+		LRK54_RS06925	0.79	-1.0
1,489,317	-		LRK54_RS06925	0.79	+0.6
1,489,450	+				-1.0
1,489,451	+				-3.0
1,489,451	+				+0.9
1,489,451	+				+0.4
1,489,451	+				+0.6
1,489,451	+				+0.4
1,489,451	+				+1.0
1,489,451	+				-0.2
1,489,451	+				-3.5
1,489,451	+				+1.5
1,489,452	-				-0.9
1,489,452	-				-1.6
1,489,452	-				-1.1
1,489,452	-				+0.5
1,489,452	-				-2.3
1,489,463	+				-0.5
1,489,463	+				+1.0
1,489,463	+				-1.2
1,489,463	+				-0.5
1,489,463	+				+1.0
1,489,463	+				+0.1
1,489,463	+				+1.4
1,489,464	-				+0.6
1,489,464	-				-1.2
1,489,497	-				+0.7
1,489,666	+		LRK54_RS06930	0.11	-1.7
1,489,666	+		LRK54_RS06930	0.11	+0.5
1,489,666	+		LRK54_RS06930	0.11	+0.4
1,489,666	+		LRK54_RS06930	0.11	+0.0
1,489,666	+		LRK54_RS06930	0.11	+1.1
1,489,666	+		LRK54_RS06930	0.11	-0.9
1,489,667	-		LRK54_RS06930	0.11	-2.7
1,489,667	-		LRK54_RS06930	0.11	+0.5
1,489,667	-		LRK54_RS06930	0.11	+1.1
1,489,667	-		LRK54_RS06930	0.11	-1.6
1,489,667	-		LRK54_RS06930	0.11	+0.9
1,489,667	-		LRK54_RS06930	0.11	-2.6
1,489,667	-		LRK54_RS06930	0.11	+0.2
1,489,667	-		LRK54_RS06930	0.11	+0.5
1,489,667	-		LRK54_RS06930	0.11	+0.4
1,489,667	-		LRK54_RS06930	0.11	+0.2
1,489,667	-		LRK54_RS06930	0.11	+2.5
1,489,667	-		LRK54_RS06930	0.11	-1.3
1,489,667	-		LRK54_RS06930	0.11	+0.3
1,489,667	-		LRK54_RS06930	0.11	-0.4
1,489,667	-		LRK54_RS06930	0.11	+1.9
1,489,669	+		LRK54_RS06930	0.12	-3.1
1,489,669	+		LRK54_RS06930	0.12	-0.1
1,489,669	+		LRK54_RS06930	0.12	+0.6
1,489,669	+		LRK54_RS06930	0.12	-1.1
1,489,669	+		LRK54_RS06930	0.12	-0.3
1,489,669	+		LRK54_RS06930	0.12	-0.6
1,489,669	+		LRK54_RS06930	0.12	-1.2
1,489,669	+		LRK54_RS06930	0.12	-2.4
1,489,669	+		LRK54_RS06930	0.12	+1.4
1,489,669	+		LRK54_RS06930	0.12	-0.3
1,489,669	+		LRK54_RS06930	0.12	-0.1
1,489,669	+		LRK54_RS06930	0.12	-0.3
1,489,669	+		LRK54_RS06930	0.12	-0.2
1,489,669	+		LRK54_RS06930	0.12	+0.8
1,489,669	+		LRK54_RS06930	0.12	-0.7
1,489,669	+		LRK54_RS06930	0.12	-1.9
1,489,669	+		LRK54_RS06930	0.12	-1.2
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