Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS01465

Experiment: R2A with Nickel (II) chloride 0.3125 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK54_RS01455 and LRK54_RS01460 overlap by 4 nucleotidesLRK54_RS01460 and LRK54_RS01465 are separated by 31 nucleotidesLRK54_RS01465 and LRK54_RS01470 overlap by 4 nucleotidesLRK54_RS01470 and LRK54_RS01475 are separated by 130 nucleotides LRK54_RS01455: LRK54_RS01455 - ribonuclease, at 317,766 to 318,200 _RS01455 LRK54_RS01460: LRK54_RS01460 - barstar family protein, at 318,197 to 318,640 _RS01460 LRK54_RS01465: LRK54_RS01465 - RNA-binding S4 domain-containing protein, at 318,672 to 318,899 _RS01465 LRK54_RS01470: LRK54_RS01470 - arylamine N-acetyltransferase, at 318,896 to 319,711 _RS01470 LRK54_RS01475: LRK54_RS01475 - peptide-methionine (S)-S-oxide reductase MsrA, at 319,842 to 320,522 _RS01475 Position (kb) 318 319Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 317.731 kb on + strandat 317.731 kb on + strandat 317.731 kb on + strandat 317.731 kb on + strandat 317.731 kb on + strandat 317.732 kb on - strandat 317.732 kb on - strandat 317.732 kb on - strandat 317.732 kb on - strandat 317.926 kb on + strand, within LRK54_RS01455at 317.926 kb on + strand, within LRK54_RS01455at 317.927 kb on - strand, within LRK54_RS01455at 318.024 kb on + strand, within LRK54_RS01455at 318.024 kb on + strand, within LRK54_RS01455at 318.024 kb on + strand, within LRK54_RS01455at 318.024 kb on + strand, within LRK54_RS01455at 318.024 kb on + strand, within LRK54_RS01455at 318.024 kb on + strand, within LRK54_RS01455at 318.024 kb on + strand, within LRK54_RS01455at 318.024 kb on + strand, within LRK54_RS01455at 318.024 kb on + strand, within LRK54_RS01455at 318.024 kb on + strand, within LRK54_RS01455at 318.024 kb on + strand, within LRK54_RS01455at 318.024 kb on + strand, within LRK54_RS01455at 318.024 kb on + strand, within LRK54_RS01455at 318.024 kb on + strand, within LRK54_RS01455at 318.024 kb on + strand, within LRK54_RS01455at 318.024 kb on + strand, within LRK54_RS01455at 318.024 kb on + strand, within LRK54_RS01455at 318.024 kb on + strand, within LRK54_RS01455at 318.024 kb on + strand, within LRK54_RS01455at 318.024 kb on + strand, within LRK54_RS01455at 318.025 kb on - strand, within LRK54_RS01455at 318.025 kb on - strand, within LRK54_RS01455at 318.025 kb on - strand, within LRK54_RS01455at 318.025 kb on - strand, within LRK54_RS01455at 318.025 kb on - strand, within LRK54_RS01455at 318.025 kb on - strand, within LRK54_RS01455at 318.025 kb on - strand, within LRK54_RS01455at 318.025 kb on - strand, within LRK54_RS01455at 318.025 kb on - strand, within LRK54_RS01455at 318.025 kb on - strand, within LRK54_RS01455at 318.025 kb on - strand, within LRK54_RS01455at 318.025 kb on - strand, within LRK54_RS01455at 318.057 kb on + strand, within LRK54_RS01455at 318.057 kb on + strand, within LRK54_RS01455at 318.057 kb on + strand, within LRK54_RS01455at 318.057 kb on + strand, within LRK54_RS01455at 318.058 kb on - strand, within LRK54_RS01455at 318.061 kb on - strand, within LRK54_RS01455at 318.061 kb on - strand, within LRK54_RS01455at 318.061 kb on - strand, within LRK54_RS01455at 318.070 kb on - strand, within LRK54_RS01455at 318.070 kb on - strand, within LRK54_RS01455at 318.147 kb on + strand, within LRK54_RS01455at 318.147 kb on + strand, within LRK54_RS01455at 318.147 kb on + strand, within LRK54_RS01455at 318.147 kb on + strand, within LRK54_RS01455at 318.147 kb on + strand, within LRK54_RS01455at 318.148 kb on - strand, within LRK54_RS01455at 318.148 kb on - strand, within LRK54_RS01455at 318.148 kb on - strand, within LRK54_RS01455at 318.148 kb on - strand, within LRK54_RS01455at 318.148 kb on - strand, within LRK54_RS01455at 318.148 kb on - strand, within LRK54_RS01455at 318.148 kb on - strand, within LRK54_RS01455at 318.148 kb on - strand, within LRK54_RS01455at 318.148 kb on - strand, within LRK54_RS01455at 318.148 kb on - strand, within LRK54_RS01455at 318.148 kb on - strand, within LRK54_RS01455at 318.148 kb on - strand, within LRK54_RS01455at 318.148 kb on - strand, within LRK54_RS01455at 318.148 kb on - strand, within LRK54_RS01455at 318.150 kb on + strand, within LRK54_RS01455at 318.150 kb on + strand, within LRK54_RS01455at 318.150 kb on + strand, within LRK54_RS01455at 318.150 kb on + strand, within LRK54_RS01455at 318.150 kb on + strand, within LRK54_RS01455at 318.150 kb on + strand, within LRK54_RS01455at 318.150 kb on + strand, within LRK54_RS01455at 318.150 kb on + strand, within LRK54_RS01455at 318.150 kb on + strand, within LRK54_RS01455at 318.150 kb on + strand, within LRK54_RS01455at 318.151 kb on - strand, within LRK54_RS01455at 318.151 kb on - strand, within LRK54_RS01455at 318.151 kb on - strand, within LRK54_RS01455at 318.151 kb on - strand, within LRK54_RS01455at 318.151 kb on - strand, within LRK54_RS01455at 318.151 kb on - strand, within LRK54_RS01455at 318.151 kb on - strand, within LRK54_RS01455at 318.151 kb on - strand, within LRK54_RS01455at 318.251 kb on + strand, within LRK54_RS01460at 318.251 kb on + strand, within LRK54_RS01460at 318.251 kb on + strand, within LRK54_RS01460at 318.251 kb on + strand, within LRK54_RS01460at 318.251 kb on + strand, within LRK54_RS01460at 318.251 kb on + strand, within LRK54_RS01460at 318.251 kb on + strand, within LRK54_RS01460at 318.251 kb on + strand, within LRK54_RS01460at 318.252 kb on - strand, within LRK54_RS01460at 318.252 kb on - strand, within LRK54_RS01460at 318.252 kb on - strand, within LRK54_RS01460at 318.252 kb on - strand, within LRK54_RS01460at 318.252 kb on - strand, within LRK54_RS01460at 318.252 kb on - strand, within LRK54_RS01460at 318.252 kb on - strand, within LRK54_RS01460at 318.252 kb on - strand, within LRK54_RS01460at 318.252 kb on - strand, within LRK54_RS01460at 318.252 kb on - strand, within LRK54_RS01460at 318.252 kb on - strand, within LRK54_RS01460at 318.464 kb on + strand, within LRK54_RS01460at 318.464 kb on + strand, within LRK54_RS01460at 318.464 kb on + strand, within LRK54_RS01460at 318.464 kb on + strand, within LRK54_RS01460at 318.465 kb on - strand, within LRK54_RS01460at 318.465 kb on - strand, within LRK54_RS01460at 318.465 kb on - strand, within LRK54_RS01460at 318.519 kb on - strand, within LRK54_RS01460at 318.519 kb on - strand, within LRK54_RS01460at 318.519 kb on - strand, within LRK54_RS01460at 318.705 kb on + strand, within LRK54_RS01465at 318.705 kb on + strand, within LRK54_RS01465at 318.705 kb on + strand, within LRK54_RS01465at 318.705 kb on + strand, within LRK54_RS01465at 318.705 kb on + strand, within LRK54_RS01465at 318.705 kb on + strand, within LRK54_RS01465at 318.705 kb on + strand, within LRK54_RS01465at 318.706 kb on - strand, within LRK54_RS01465at 318.706 kb on - strand, within LRK54_RS01465at 318.706 kb on - strand, within LRK54_RS01465at 318.706 kb on - strand, within LRK54_RS01465at 318.706 kb on - strand, within LRK54_RS01465at 318.706 kb on - strand, within LRK54_RS01465at 318.706 kb on - strand, within LRK54_RS01465at 318.706 kb on - strand, within LRK54_RS01465at 319.093 kb on + strand, within LRK54_RS01470at 319.093 kb on + strand, within LRK54_RS01470at 319.094 kb on - strand, within LRK54_RS01470at 319.134 kb on + strand, within LRK54_RS01470at 319.134 kb on + strand, within LRK54_RS01470at 319.134 kb on + strand, within LRK54_RS01470at 319.134 kb on + strand, within LRK54_RS01470at 319.134 kb on + strand, within LRK54_RS01470at 319.134 kb on + strand, within LRK54_RS01470at 319.134 kb on + strand, within LRK54_RS01470at 319.134 kb on + strand, within LRK54_RS01470at 319.134 kb on + strand, within LRK54_RS01470at 319.134 kb on + strand, within LRK54_RS01470at 319.134 kb on + strand, within LRK54_RS01470at 319.135 kb on - strand, within LRK54_RS01470at 319.135 kb on - strand, within LRK54_RS01470at 319.135 kb on - strand, within LRK54_RS01470at 319.135 kb on - strand, within LRK54_RS01470at 319.135 kb on - strand, within LRK54_RS01470at 319.135 kb on - strand, within LRK54_RS01470at 319.135 kb on - strand, within LRK54_RS01470at 319.135 kb on - strand, within LRK54_RS01470at 319.135 kb on - strand, within LRK54_RS01470at 319.152 kb on + strand, within LRK54_RS01470at 319.152 kb on + strand, within LRK54_RS01470at 319.152 kb on + strand, within LRK54_RS01470at 319.152 kb on + strand, within LRK54_RS01470at 319.152 kb on + strand, within LRK54_RS01470at 319.152 kb on + strand, within LRK54_RS01470at 319.152 kb on + strand, within LRK54_RS01470at 319.152 kb on + strand, within LRK54_RS01470at 319.152 kb on + strand, within LRK54_RS01470at 319.152 kb on + strand, within LRK54_RS01470at 319.153 kb on - strand, within LRK54_RS01470at 319.153 kb on - strand, within LRK54_RS01470at 319.153 kb on - strand, within LRK54_RS01470at 319.153 kb on - strand, within LRK54_RS01470at 319.153 kb on - strand, within LRK54_RS01470at 319.153 kb on - strand, within LRK54_RS01470at 319.153 kb on - strand, within LRK54_RS01470at 319.153 kb on - strand, within LRK54_RS01470at 319.153 kb on - strand, within LRK54_RS01470at 319.153 kb on - strand, within LRK54_RS01470at 319.153 kb on - strand, within LRK54_RS01470at 319.153 kb on - strand, within LRK54_RS01470at 319.153 kb on - strand, within LRK54_RS01470at 319.188 kb on + strand, within LRK54_RS01470at 319.189 kb on - strand, within LRK54_RS01470at 319.189 kb on - strand, within LRK54_RS01470at 319.425 kb on - strand, within LRK54_RS01470at 319.683 kb on + strandat 319.683 kb on + strandat 319.683 kb on + strandat 319.683 kb on + strandat 319.683 kb on + strandat 319.683 kb on + strandat 319.683 kb on + strandat 319.683 kb on + strandat 319.683 kb on + strandat 319.684 kb on - strandat 319.684 kb on - strandat 319.684 kb on - strandat 319.684 kb on - strandat 319.684 kb on - strandat 319.684 kb on - strandat 319.684 kb on - strandat 319.747 kb on - strandat 319.767 kb on - strandat 319.772 kb on + strandat 319.772 kb on + strandat 319.784 kb on + strandat 319.784 kb on + strandat 319.784 kb on + strandat 319.784 kb on + strandat 319.784 kb on + strandat 319.784 kb on + strandat 319.784 kb on + strandat 319.784 kb on + strandat 319.784 kb on + strandat 319.784 kb on + strandat 319.784 kb on + strandat 319.785 kb on - strandat 319.785 kb on - strandat 319.785 kb on - strandat 319.785 kb on - strandat 319.785 kb on - strandat 319.785 kb on - strandat 319.785 kb on - strandat 319.785 kb on - strandat 319.785 kb on - strandat 319.785 kb on - strandat 319.785 kb on - strandat 319.785 kb on - strandat 319.785 kb on - strandat 319.804 kb on + strandat 319.804 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Nickel (II) chloride 0.3125 mM
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317,731 + +1.4
317,731 + +0.5
317,731 + -0.8
317,731 + -2.0
317,731 + -1.1
317,732 - -1.6
317,732 - -1.8
317,732 - -1.0
317,732 - -0.5
317,926 + LRK54_RS01455 0.37 +0.4
317,926 + LRK54_RS01455 0.37 -2.3
317,927 - LRK54_RS01455 0.37 +0.2
318,024 + LRK54_RS01455 0.59 -2.3
318,024 + LRK54_RS01455 0.59 -1.0
318,024 + LRK54_RS01455 0.59 -0.0
318,024 + LRK54_RS01455 0.59 -2.5
318,024 + LRK54_RS01455 0.59 +1.4
318,024 + LRK54_RS01455 0.59 +1.2
318,024 + LRK54_RS01455 0.59 -0.0
318,024 + LRK54_RS01455 0.59 +0.8
318,024 + LRK54_RS01455 0.59 +0.8
318,024 + LRK54_RS01455 0.59 +0.9
318,024 + LRK54_RS01455 0.59 +0.8
318,024 + LRK54_RS01455 0.59 +0.8
318,024 + LRK54_RS01455 0.59 -0.1
318,024 + LRK54_RS01455 0.59 -0.6
318,024 + LRK54_RS01455 0.59 -1.2
318,024 + LRK54_RS01455 0.59 -0.6
318,024 + LRK54_RS01455 0.59 +0.1
318,024 + LRK54_RS01455 0.59 +2.4
318,024 + LRK54_RS01455 0.59 -0.9
318,024 + LRK54_RS01455 0.59 +1.4
318,025 - LRK54_RS01455 0.60 -1.7
318,025 - LRK54_RS01455 0.60 -1.1
318,025 - LRK54_RS01455 0.60 -0.1
318,025 - LRK54_RS01455 0.60 +2.4
318,025 - LRK54_RS01455 0.60 -1.4
318,025 - LRK54_RS01455 0.60 +1.8
318,025 - LRK54_RS01455 0.60 -1.5
318,025 - LRK54_RS01455 0.60 -0.2
318,025 - LRK54_RS01455 0.60 -1.5
318,025 - LRK54_RS01455 0.60 +0.4
318,025 - LRK54_RS01455 0.60 +0.1
318,025 - LRK54_RS01455 0.60 -1.8
318,057 + LRK54_RS01455 0.67 +0.4
318,057 + LRK54_RS01455 0.67 -2.3
318,057 + LRK54_RS01455 0.67 -1.3
318,057 + LRK54_RS01455 0.67 +2.4
318,058 - LRK54_RS01455 0.67 -0.0
318,061 - LRK54_RS01455 0.68 +1.6
318,061 - LRK54_RS01455 0.68 -0.5
318,061 - LRK54_RS01455 0.68 -0.5
318,070 - LRK54_RS01455 0.70 -0.4
318,070 - LRK54_RS01455 0.70 -1.6
318,147 + LRK54_RS01455 0.88 +1.8
318,147 + LRK54_RS01455 0.88 -2.0
318,147 + LRK54_RS01455 0.88 -0.2
318,147 + LRK54_RS01455 0.88 -2.7
318,147 + LRK54_RS01455 0.88 -0.1
318,148 - LRK54_RS01455 0.88 +1.9
318,148 - LRK54_RS01455 0.88 +0.3
318,148 - LRK54_RS01455 0.88 -0.4
318,148 - LRK54_RS01455 0.88 +0.1
318,148 - LRK54_RS01455 0.88 -0.1
318,148 - LRK54_RS01455 0.88 -1.0
318,148 - LRK54_RS01455 0.88 +2.5
318,148 - LRK54_RS01455 0.88 +0.4
318,148 - LRK54_RS01455 0.88 +1.6
318,148 - LRK54_RS01455 0.88 -0.8
318,148 - LRK54_RS01455 0.88 +1.2
318,148 - LRK54_RS01455 0.88 +0.4
318,148 - LRK54_RS01455 0.88 +2.6
318,148 - LRK54_RS01455 0.88 +0.1
318,150 + LRK54_RS01455 0.88 +0.3
318,150 + LRK54_RS01455 0.88 -2.0
318,150 + LRK54_RS01455 0.88 -1.3
318,150 + LRK54_RS01455 0.88 -2.2
318,150 + LRK54_RS01455 0.88 +0.2
318,150 + LRK54_RS01455 0.88 +0.9
318,150 + LRK54_RS01455 0.88 -0.0
318,150 + LRK54_RS01455 0.88 +0.1
318,150 + LRK54_RS01455 0.88 -1.8
318,150 + LRK54_RS01455 0.88 -0.6
318,151 - LRK54_RS01455 0.89 -2.5
318,151 - LRK54_RS01455 0.89 +0.7
318,151 - LRK54_RS01455 0.89 -1.3
318,151 - LRK54_RS01455 0.89 +1.6
318,151 - LRK54_RS01455 0.89 +0.7
318,151 - LRK54_RS01455 0.89 +1.4
318,151 - LRK54_RS01455 0.89 -0.4
318,151 - LRK54_RS01455 0.89 -0.6
318,251 + LRK54_RS01460 0.12 -1.4
318,251 + LRK54_RS01460 0.12 -1.9
318,251 + LRK54_RS01460 0.12 -3.1
318,251 + LRK54_RS01460 0.12 -1.7
318,251 + LRK54_RS01460 0.12 -0.4
318,251 + LRK54_RS01460 0.12 +1.2
318,251 + LRK54_RS01460 0.12 -0.1
318,251 + LRK54_RS01460 0.12 -0.1
318,252 - LRK54_RS01460 0.12 +1.6
318,252 - LRK54_RS01460 0.12 -0.3
318,252 - LRK54_RS01460 0.12 -0.3
318,252 - LRK54_RS01460 0.12 -0.8
318,252 - LRK54_RS01460 0.12 +1.0
318,252 - LRK54_RS01460 0.12 +2.2
318,252 - LRK54_RS01460 0.12 -1.1
318,252 - LRK54_RS01460 0.12 -1.3
318,252 - LRK54_RS01460 0.12 -0.6
318,252 - LRK54_RS01460 0.12 -0.2
318,252 - LRK54_RS01460 0.12 +0.3
318,464 + LRK54_RS01460 0.60 -1.1
318,464 + LRK54_RS01460 0.60 -0.6
318,464 + LRK54_RS01460 0.60 -1.1
318,464 + LRK54_RS01460 0.60 -1.9
318,465 - LRK54_RS01460 0.60 -1.1
318,465 - LRK54_RS01460 0.60 -0.8
318,465 - LRK54_RS01460 0.60 +0.6
318,519 - LRK54_RS01460 0.73 -2.2
318,519 - LRK54_RS01460 0.73 -1.3
318,519 - LRK54_RS01460 0.73 -1.5
318,705 + LRK54_RS01465 0.14 -2.0
318,705 + LRK54_RS01465 0.14 +0.9
318,705 + LRK54_RS01465 0.14 -2.3
318,705 + LRK54_RS01465 0.14 -2.0
318,705 + LRK54_RS01465 0.14 -0.8
318,705 + LRK54_RS01465 0.14 -2.3
318,705 + LRK54_RS01465 0.14 +1.4
318,706 - LRK54_RS01465 0.15 -0.9
318,706 - LRK54_RS01465 0.15 +0.7
318,706 - LRK54_RS01465 0.15 +0.4
318,706 - LRK54_RS01465 0.15 -2.0
318,706 - LRK54_RS01465 0.15 +0.2
318,706 - LRK54_RS01465 0.15 -1.2
318,706 - LRK54_RS01465 0.15 +1.3
318,706 - LRK54_RS01465 0.15 -1.1
319,093 + LRK54_RS01470 0.24 +0.4
319,093 + LRK54_RS01470 0.24 +0.6
319,094 - LRK54_RS01470 0.24 +0.1
319,134 + LRK54_RS01470 0.29 +0.5
319,134 + LRK54_RS01470 0.29 +1.7
319,134 + LRK54_RS01470 0.29 +0.0
319,134 + LRK54_RS01470 0.29 -0.3
319,134 + LRK54_RS01470 0.29 -1.4
319,134 + LRK54_RS01470 0.29 -0.1
319,134 + LRK54_RS01470 0.29 -1.2
319,134 + LRK54_RS01470 0.29 +0.8
319,134 + LRK54_RS01470 0.29 +0.3
319,134 + LRK54_RS01470 0.29 -2.3
319,134 + LRK54_RS01470 0.29 +1.0
319,135 - LRK54_RS01470 0.29 +0.8
319,135 - LRK54_RS01470 0.29 +0.1
319,135 - LRK54_RS01470 0.29 +2.5
319,135 - LRK54_RS01470 0.29 -2.8
319,135 - LRK54_RS01470 0.29 -0.3
319,135 - LRK54_RS01470 0.29 +3.4
319,135 - LRK54_RS01470 0.29 +3.0
319,135 - LRK54_RS01470 0.29 -0.6
319,135 - LRK54_RS01470 0.29 -0.2
319,152 + LRK54_RS01470 0.31 -1.3
319,152 + LRK54_RS01470 0.31 -1.2
319,152 + LRK54_RS01470 0.31 +0.3
319,152 + LRK54_RS01470 0.31 +0.5
319,152 + LRK54_RS01470 0.31 -0.0
319,152 + LRK54_RS01470 0.31 +0.7
319,152 + LRK54_RS01470 0.31 -0.5
319,152 + LRK54_RS01470 0.31 +0.2
319,152 + LRK54_RS01470 0.31 +0.6
319,152 + LRK54_RS01470 0.31 -0.6
319,153 - LRK54_RS01470 0.31 +1.2
319,153 - LRK54_RS01470 0.31 -1.4
319,153 - LRK54_RS01470 0.31 -1.9
319,153 - LRK54_RS01470 0.31 -2.4
319,153 - LRK54_RS01470 0.31 +1.8
319,153 - LRK54_RS01470 0.31 +0.3
319,153 - LRK54_RS01470 0.31 -0.6
319,153 - LRK54_RS01470 0.31 -0.6
319,153 - LRK54_RS01470 0.31 +0.2
319,153 - LRK54_RS01470 0.31 +0.9
319,153 - LRK54_RS01470 0.31 +0.2
319,153 - LRK54_RS01470 0.31 -2.6
319,153 - LRK54_RS01470 0.31 +0.4
319,188 + LRK54_RS01470 0.36 -1.5
319,189 - LRK54_RS01470 0.36 -1.3
319,189 - LRK54_RS01470 0.36 +0.4
319,425 - LRK54_RS01470 0.65 +0.3
319,683 + -0.9
319,683 + -1.6
319,683 + -2.6
319,683 + -0.8
319,683 + -1.8
319,683 + -0.9
319,683 + +0.2
319,683 + -1.5
319,683 + -0.7
319,684 - -1.8
319,684 - -1.5
319,684 - +1.1
319,684 - -0.8
319,684 - -0.4
319,684 - -2.0
319,684 - -0.1
319,747 - -0.5
319,767 - -1.0
319,772 + +0.2
319,772 + +0.9
319,784 + -0.5
319,784 + -1.0
319,784 + -2.1
319,784 + -0.2
319,784 + -1.2
319,784 + +1.3
319,784 + -0.8
319,784 + -1.6
319,784 + +0.3
319,784 + +0.2
319,784 + +1.1
319,785 - -1.9
319,785 - -0.1
319,785 - -0.1
319,785 - +0.2
319,785 - +3.3
319,785 - +0.5
319,785 - -1.7
319,785 - -0.2
319,785 - +2.0
319,785 - -1.7
319,785 - -0.2
319,785 - -1.1
319,785 - -0.1
319,804 + -1.3
319,804 + -1.0

Or see this region's nucleotide sequence