Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS17890

Experiment: D-Galactose 20 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS17895 and HMPREF1058_RS17890 are separated by 119 nucleotidesHMPREF1058_RS17890 and HMPREF1058_RS17885 are separated by 143 nucleotides HMPREF1058_RS17895: HMPREF1058_RS17895 - hypothetical protein, at 305,027 to 306,277 _RS17895 HMPREF1058_RS17890: HMPREF1058_RS17890 - DUF4301 family protein, at 306,397 to 307,914 _RS17890 HMPREF1058_RS17885: HMPREF1058_RS17885 - bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase, at 308,058 to 310,271 _RS17885 Position (kb) 306 307 308Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 305.411 kb on - strand, within HMPREF1058_RS17895at 305.435 kb on - strand, within HMPREF1058_RS17895at 305.436 kb on + strand, within HMPREF1058_RS17895at 305.437 kb on - strand, within HMPREF1058_RS17895at 305.529 kb on + strand, within HMPREF1058_RS17895at 305.533 kb on - strand, within HMPREF1058_RS17895at 305.626 kb on - strand, within HMPREF1058_RS17895at 305.644 kb on + strand, within HMPREF1058_RS17895at 305.644 kb on + strand, within HMPREF1058_RS17895at 305.664 kb on + strand, within HMPREF1058_RS17895at 305.664 kb on + strand, within HMPREF1058_RS17895at 305.664 kb on + strand, within HMPREF1058_RS17895at 305.664 kb on + strand, within HMPREF1058_RS17895at 305.744 kb on + strand, within HMPREF1058_RS17895at 305.745 kb on - strand, within HMPREF1058_RS17895at 305.745 kb on - strand, within HMPREF1058_RS17895at 305.813 kb on - strand, within HMPREF1058_RS17895at 305.924 kb on - strand, within HMPREF1058_RS17895at 306.002 kb on + strand, within HMPREF1058_RS17895at 306.003 kb on - strand, within HMPREF1058_RS17895at 306.003 kb on - strand, within HMPREF1058_RS17895at 306.118 kb on - strand, within HMPREF1058_RS17895at 306.165 kb on - strandat 306.179 kb on - strandat 306.179 kb on - strandat 306.230 kb on - strandat 306.285 kb on - strandat 306.298 kb on + strandat 306.313 kb on - strandat 306.313 kb on - strandat 306.376 kb on - strandat 306.376 kb on - strandat 306.398 kb on + strandat 306.554 kb on + strand, within HMPREF1058_RS17890at 306.570 kb on + strand, within HMPREF1058_RS17890at 306.585 kb on - strand, within HMPREF1058_RS17890at 306.612 kb on + strand, within HMPREF1058_RS17890at 306.748 kb on - strand, within HMPREF1058_RS17890at 306.748 kb on - strand, within HMPREF1058_RS17890at 306.837 kb on - strand, within HMPREF1058_RS17890at 306.889 kb on + strand, within HMPREF1058_RS17890at 306.889 kb on + strand, within HMPREF1058_RS17890at 306.890 kb on - strand, within HMPREF1058_RS17890at 306.936 kb on + strand, within HMPREF1058_RS17890at 306.936 kb on + strand, within HMPREF1058_RS17890at 306.937 kb on - strand, within HMPREF1058_RS17890at 306.938 kb on + strand, within HMPREF1058_RS17890at 306.938 kb on + strand, within HMPREF1058_RS17890at 306.939 kb on - strand, within HMPREF1058_RS17890at 306.991 kb on - strand, within HMPREF1058_RS17890at 307.059 kb on + strand, within HMPREF1058_RS17890at 307.059 kb on + strand, within HMPREF1058_RS17890at 307.060 kb on - strand, within HMPREF1058_RS17890at 307.060 kb on - strand, within HMPREF1058_RS17890at 307.063 kb on + strand, within HMPREF1058_RS17890at 307.063 kb on + strand, within HMPREF1058_RS17890at 307.063 kb on + strand, within HMPREF1058_RS17890at 307.080 kb on + strand, within HMPREF1058_RS17890at 307.232 kb on + strand, within HMPREF1058_RS17890at 307.233 kb on - strand, within HMPREF1058_RS17890at 307.233 kb on - strand, within HMPREF1058_RS17890at 307.355 kb on + strand, within HMPREF1058_RS17890at 307.492 kb on - strand, within HMPREF1058_RS17890at 307.566 kb on - strand, within HMPREF1058_RS17890at 307.578 kb on + strand, within HMPREF1058_RS17890at 307.578 kb on + strand, within HMPREF1058_RS17890at 307.584 kb on + strand, within HMPREF1058_RS17890at 307.584 kb on + strand, within HMPREF1058_RS17890at 307.628 kb on + strand, within HMPREF1058_RS17890at 307.723 kb on - strand, within HMPREF1058_RS17890at 307.724 kb on + strand, within HMPREF1058_RS17890at 307.724 kb on + strand, within HMPREF1058_RS17890at 307.724 kb on + strand, within HMPREF1058_RS17890at 307.725 kb on - strand, within HMPREF1058_RS17890at 307.914 kb on + strandat 307.938 kb on - strandat 307.968 kb on + strandat 307.968 kb on + strandat 308.015 kb on - strandat 308.113 kb on - strandat 308.176 kb on + strandat 308.341 kb on + strand, within HMPREF1058_RS17885at 308.342 kb on - strand, within HMPREF1058_RS17885at 308.423 kb on - strand, within HMPREF1058_RS17885at 308.444 kb on - strand, within HMPREF1058_RS17885at 308.499 kb on - strand, within HMPREF1058_RS17885at 308.542 kb on + strand, within HMPREF1058_RS17885at 308.542 kb on + strand, within HMPREF1058_RS17885at 308.560 kb on + strand, within HMPREF1058_RS17885at 308.578 kb on + strand, within HMPREF1058_RS17885at 308.579 kb on - strand, within HMPREF1058_RS17885at 308.596 kb on - strand, within HMPREF1058_RS17885at 308.629 kb on + strand, within HMPREF1058_RS17885at 308.631 kb on + strand, within HMPREF1058_RS17885at 308.631 kb on + strand, within HMPREF1058_RS17885at 308.632 kb on - strand, within HMPREF1058_RS17885at 308.686 kb on + strand, within HMPREF1058_RS17885at 308.686 kb on + strand, within HMPREF1058_RS17885at 308.687 kb on - strand, within HMPREF1058_RS17885at 308.688 kb on + strand, within HMPREF1058_RS17885at 308.688 kb on + strand, within HMPREF1058_RS17885at 308.689 kb on - strand, within HMPREF1058_RS17885at 308.696 kb on + strand, within HMPREF1058_RS17885at 308.698 kb on + strand, within HMPREF1058_RS17885at 308.698 kb on + strand, within HMPREF1058_RS17885at 308.699 kb on - strand, within HMPREF1058_RS17885at 308.739 kb on + strand, within HMPREF1058_RS17885at 308.740 kb on - strand, within HMPREF1058_RS17885at 308.740 kb on - strand, within HMPREF1058_RS17885at 308.877 kb on + strand, within HMPREF1058_RS17885

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Galactose 20 mM (C)
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305,411 - HMPREF1058_RS17895 0.31 -1.6
305,435 - HMPREF1058_RS17895 0.33 -1.3
305,436 + HMPREF1058_RS17895 0.33 -0.8
305,437 - HMPREF1058_RS17895 0.33 +0.6
305,529 + HMPREF1058_RS17895 0.40 -1.5
305,533 - HMPREF1058_RS17895 0.40 -2.8
305,626 - HMPREF1058_RS17895 0.48 +0.3
305,644 + HMPREF1058_RS17895 0.49 -1.3
305,644 + HMPREF1058_RS17895 0.49 -1.1
305,664 + HMPREF1058_RS17895 0.51 +0.5
305,664 + HMPREF1058_RS17895 0.51 +0.6
305,664 + HMPREF1058_RS17895 0.51 -1.8
305,664 + HMPREF1058_RS17895 0.51 -0.4
305,744 + HMPREF1058_RS17895 0.57 +0.8
305,745 - HMPREF1058_RS17895 0.57 -1.1
305,745 - HMPREF1058_RS17895 0.57 +0.7
305,813 - HMPREF1058_RS17895 0.63 -2.3
305,924 - HMPREF1058_RS17895 0.72 -1.5
306,002 + HMPREF1058_RS17895 0.78 -2.6
306,003 - HMPREF1058_RS17895 0.78 +0.7
306,003 - HMPREF1058_RS17895 0.78 +1.0
306,118 - HMPREF1058_RS17895 0.87 -0.9
306,165 - +0.9
306,179 - +0.4
306,179 - -0.1
306,230 - +0.2
306,285 - -0.5
306,298 + +0.1
306,313 - +1.7
306,313 - +1.9
306,376 - -0.1
306,376 - -2.1
306,398 + +0.5
306,554 + HMPREF1058_RS17890 0.10 +0.1
306,570 + HMPREF1058_RS17890 0.11 -0.7
306,585 - HMPREF1058_RS17890 0.12 +0.1
306,612 + HMPREF1058_RS17890 0.14 -0.8
306,748 - HMPREF1058_RS17890 0.23 -1.1
306,748 - HMPREF1058_RS17890 0.23 -1.5
306,837 - HMPREF1058_RS17890 0.29 -1.1
306,889 + HMPREF1058_RS17890 0.32 -1.3
306,889 + HMPREF1058_RS17890 0.32 -2.1
306,890 - HMPREF1058_RS17890 0.32 -2.2
306,936 + HMPREF1058_RS17890 0.36 -1.6
306,936 + HMPREF1058_RS17890 0.36 -0.8
306,937 - HMPREF1058_RS17890 0.36 -0.2
306,938 + HMPREF1058_RS17890 0.36 -2.1
306,938 + HMPREF1058_RS17890 0.36 -1.7
306,939 - HMPREF1058_RS17890 0.36 -0.7
306,991 - HMPREF1058_RS17890 0.39 -3.0
307,059 + HMPREF1058_RS17890 0.44 -1.9
307,059 + HMPREF1058_RS17890 0.44 -2.1
307,060 - HMPREF1058_RS17890 0.44 -0.9
307,060 - HMPREF1058_RS17890 0.44 -0.7
307,063 + HMPREF1058_RS17890 0.44 -1.6
307,063 + HMPREF1058_RS17890 0.44 -0.6
307,063 + HMPREF1058_RS17890 0.44 -1.1
307,080 + HMPREF1058_RS17890 0.45 +1.0
307,232 + HMPREF1058_RS17890 0.55 -0.2
307,233 - HMPREF1058_RS17890 0.55 -2.8
307,233 - HMPREF1058_RS17890 0.55 -2.8
307,355 + HMPREF1058_RS17890 0.63 -3.0
307,492 - HMPREF1058_RS17890 0.72 -0.5
307,566 - HMPREF1058_RS17890 0.77 -1.8
307,578 + HMPREF1058_RS17890 0.78 -0.1
307,578 + HMPREF1058_RS17890 0.78 -2.0
307,584 + HMPREF1058_RS17890 0.78 -1.9
307,584 + HMPREF1058_RS17890 0.78 -1.1
307,628 + HMPREF1058_RS17890 0.81 -1.9
307,723 - HMPREF1058_RS17890 0.87 -2.0
307,724 + HMPREF1058_RS17890 0.87 -1.1
307,724 + HMPREF1058_RS17890 0.87 -0.5
307,724 + HMPREF1058_RS17890 0.87 -3.0
307,725 - HMPREF1058_RS17890 0.87 -0.8
307,914 + -3.6
307,938 - -0.3
307,968 + -1.5
307,968 + -0.7
308,015 - -1.7
308,113 - -3.1
308,176 + -3.9
308,341 + HMPREF1058_RS17885 0.13 +0.5
308,342 - HMPREF1058_RS17885 0.13 -3.9
308,423 - HMPREF1058_RS17885 0.16 -1.1
308,444 - HMPREF1058_RS17885 0.17 -2.4
308,499 - HMPREF1058_RS17885 0.20 -1.9
308,542 + HMPREF1058_RS17885 0.22 -4.3
308,542 + HMPREF1058_RS17885 0.22 -2.7
308,560 + HMPREF1058_RS17885 0.23 -1.7
308,578 + HMPREF1058_RS17885 0.23 -1.8
308,579 - HMPREF1058_RS17885 0.24 -2.9
308,596 - HMPREF1058_RS17885 0.24 -1.5
308,629 + HMPREF1058_RS17885 0.26 -4.4
308,631 + HMPREF1058_RS17885 0.26 -2.8
308,631 + HMPREF1058_RS17885 0.26 -5.4
308,632 - HMPREF1058_RS17885 0.26 -2.5
308,686 + HMPREF1058_RS17885 0.28 -4.4
308,686 + HMPREF1058_RS17885 0.28 -4.4
308,687 - HMPREF1058_RS17885 0.28 -2.9
308,688 + HMPREF1058_RS17885 0.28 -3.1
308,688 + HMPREF1058_RS17885 0.28 -2.9
308,689 - HMPREF1058_RS17885 0.29 -3.2
308,696 + HMPREF1058_RS17885 0.29 -2.8
308,698 + HMPREF1058_RS17885 0.29 -2.9
308,698 + HMPREF1058_RS17885 0.29 -2.4
308,699 - HMPREF1058_RS17885 0.29 -1.1
308,739 + HMPREF1058_RS17885 0.31 -3.7
308,740 - HMPREF1058_RS17885 0.31 -4.4
308,740 - HMPREF1058_RS17885 0.31 -1.4
308,877 + HMPREF1058_RS17885 0.37 -4.2

Or see this region's nucleotide sequence