Experiment: D-Galactose 20 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS15860 and HMPREF1058_RS15855 are separated by 105 nucleotides HMPREF1058_RS15855 and HMPREF1058_RS15850 overlap by 4 nucleotides HMPREF1058_RS15850 and HMPREF1058_RS15845 are separated by 12 nucleotides HMPREF1058_RS15845 and HMPREF1058_RS15840 overlap by 4 nucleotides
HMPREF1058_RS15860: HMPREF1058_RS15860 - Dabb family protein, at 818,902 to 819,201
_RS15860
HMPREF1058_RS15855: HMPREF1058_RS15855 - uridine kinase, at 819,307 to 819,918
_RS15855
HMPREF1058_RS15850: HMPREF1058_RS15850 - transglycosylase SLT domain-containing protein, at 819,915 to 821,294
_RS15850
HMPREF1058_RS15845: HMPREF1058_RS15845 - YjbH domain-containing protein, at 821,307 to 822,119
_RS15845
HMPREF1058_RS15840: HMPREF1058_RS15840 - glycosyltransferase family 4 protein, at 822,116 to 823,204
_RS15840
Position (kb) 819
820
821
822 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 819.074 kb on - strand, within HMPREF1058_RS15860 at 819.074 kb on - strand, within HMPREF1058_RS15860 at 819.084 kb on + strand, within HMPREF1058_RS15860 at 819.091 kb on + strand, within HMPREF1058_RS15860 at 819.124 kb on - strand, within HMPREF1058_RS15860 at 819.258 kb on + strand at 819.300 kb on + strand at 819.300 kb on + strand at 819.300 kb on + strand at 819.301 kb on - strand at 819.307 kb on - strand at 819.312 kb on - strand at 819.357 kb on - strand at 819.418 kb on + strand, within HMPREF1058_RS15855 at 819.419 kb on - strand, within HMPREF1058_RS15855 at 819.421 kb on + strand, within HMPREF1058_RS15855 at 819.421 kb on + strand, within HMPREF1058_RS15855 at 819.422 kb on - strand, within HMPREF1058_RS15855 at 819.424 kb on - strand, within HMPREF1058_RS15855 at 819.456 kb on + strand, within HMPREF1058_RS15855 at 819.562 kb on + strand, within HMPREF1058_RS15855 at 819.563 kb on - strand, within HMPREF1058_RS15855 at 819.566 kb on + strand, within HMPREF1058_RS15855 at 819.566 kb on + strand, within HMPREF1058_RS15855 at 819.569 kb on + strand, within HMPREF1058_RS15855 at 819.573 kb on + strand, within HMPREF1058_RS15855 at 819.643 kb on + strand, within HMPREF1058_RS15855 at 819.819 kb on + strand, within HMPREF1058_RS15855 at 819.819 kb on + strand, within HMPREF1058_RS15855 at 819.841 kb on - strand, within HMPREF1058_RS15855 at 819.841 kb on - strand, within HMPREF1058_RS15855 at 819.844 kb on - strand, within HMPREF1058_RS15855 at 819.890 kb on + strand at 819.950 kb on - strand at 820.016 kb on - strand at 820.218 kb on + strand, within HMPREF1058_RS15850 at 820.275 kb on - strand, within HMPREF1058_RS15850 at 820.349 kb on - strand, within HMPREF1058_RS15850 at 820.365 kb on + strand, within HMPREF1058_RS15850 at 820.370 kb on - strand, within HMPREF1058_RS15850 at 820.383 kb on + strand, within HMPREF1058_RS15850 at 820.409 kb on + strand, within HMPREF1058_RS15850 at 820.427 kb on + strand, within HMPREF1058_RS15850 at 820.548 kb on + strand, within HMPREF1058_RS15850 at 820.548 kb on + strand, within HMPREF1058_RS15850 at 820.610 kb on - strand, within HMPREF1058_RS15850 at 820.613 kb on + strand, within HMPREF1058_RS15850 at 820.646 kb on + strand, within HMPREF1058_RS15850 at 820.647 kb on - strand, within HMPREF1058_RS15850 at 820.781 kb on - strand, within HMPREF1058_RS15850 at 820.791 kb on + strand, within HMPREF1058_RS15850 at 820.967 kb on + strand, within HMPREF1058_RS15850 at 820.967 kb on + strand, within HMPREF1058_RS15850 at 820.968 kb on - strand, within HMPREF1058_RS15850 at 820.969 kb on + strand, within HMPREF1058_RS15850 at 820.987 kb on - strand, within HMPREF1058_RS15850 at 820.987 kb on - strand, within HMPREF1058_RS15850 at 821.075 kb on - strand, within HMPREF1058_RS15850 at 821.084 kb on - strand, within HMPREF1058_RS15850 at 821.112 kb on + strand, within HMPREF1058_RS15850 at 821.124 kb on - strand, within HMPREF1058_RS15850 at 821.127 kb on + strand, within HMPREF1058_RS15850 at 821.127 kb on + strand, within HMPREF1058_RS15850 at 821.128 kb on - strand, within HMPREF1058_RS15850 at 821.128 kb on - strand, within HMPREF1058_RS15850 at 821.131 kb on + strand, within HMPREF1058_RS15850 at 821.150 kb on + strand, within HMPREF1058_RS15850 at 821.151 kb on - strand, within HMPREF1058_RS15850 at 821.155 kb on - strand, within HMPREF1058_RS15850 at 821.156 kb on + strand, within HMPREF1058_RS15850 at 821.156 kb on + strand, within HMPREF1058_RS15850 at 821.156 kb on + strand, within HMPREF1058_RS15850 at 821.385 kb on - strand at 821.405 kb on - strand, within HMPREF1058_RS15845 at 821.415 kb on + strand, within HMPREF1058_RS15845 at 821.415 kb on + strand, within HMPREF1058_RS15845 at 821.415 kb on + strand, within HMPREF1058_RS15845 at 821.415 kb on + strand, within HMPREF1058_RS15845 at 821.416 kb on - strand, within HMPREF1058_RS15845 at 821.416 kb on - strand, within HMPREF1058_RS15845 at 821.416 kb on - strand, within HMPREF1058_RS15845 at 821.417 kb on + strand, within HMPREF1058_RS15845 at 821.437 kb on + strand, within HMPREF1058_RS15845 at 821.510 kb on + strand, within HMPREF1058_RS15845 at 821.517 kb on + strand, within HMPREF1058_RS15845 at 821.518 kb on - strand, within HMPREF1058_RS15845 at 821.540 kb on - strand, within HMPREF1058_RS15845 at 821.557 kb on + strand, within HMPREF1058_RS15845 at 821.557 kb on + strand, within HMPREF1058_RS15845 at 821.563 kb on + strand, within HMPREF1058_RS15845 at 821.563 kb on + strand, within HMPREF1058_RS15845 at 821.564 kb on - strand, within HMPREF1058_RS15845 at 821.581 kb on - strand, within HMPREF1058_RS15845 at 821.591 kb on + strand, within HMPREF1058_RS15845 at 821.592 kb on - strand, within HMPREF1058_RS15845 at 821.600 kb on + strand, within HMPREF1058_RS15845 at 821.615 kb on + strand at 821.661 kb on - strand, within HMPREF1058_RS15845 at 821.669 kb on + strand, within HMPREF1058_RS15845 at 821.675 kb on + strand, within HMPREF1058_RS15845 at 821.840 kb on - strand, within HMPREF1058_RS15845 at 821.877 kb on - strand, within HMPREF1058_RS15845 at 821.877 kb on - strand, within HMPREF1058_RS15845 at 821.878 kb on + strand, within HMPREF1058_RS15845 at 821.909 kb on + strand, within HMPREF1058_RS15845 at 821.920 kb on + strand, within HMPREF1058_RS15845 at 821.925 kb on - strand, within HMPREF1058_RS15845 at 821.935 kb on + strand, within HMPREF1058_RS15845 at 822.158 kb on + strand at 822.174 kb on + strand at 822.174 kb on + strand at 822.195 kb on - strand at 822.248 kb on + strand, within HMPREF1058_RS15840 at 822.249 kb on - strand, within HMPREF1058_RS15840
Per-strain Table
Position Strand Gene LocusTag Fraction D-Galactose 20 mM (C) remove 819,074 - HMPREF1058_RS15860 0.57 -0.1 819,074 - HMPREF1058_RS15860 0.57 -2.0 819,084 + HMPREF1058_RS15860 0.61 -0.4 819,091 + HMPREF1058_RS15860 0.63 -0.5 819,124 - HMPREF1058_RS15860 0.74 -0.6 819,258 + -0.7 819,300 + -0.4 819,300 + -1.3 819,300 + -2.5 819,301 - -2.7 819,307 - -2.8 819,312 - -4.2 819,357 - -3.5 819,418 + HMPREF1058_RS15855 0.18 -0.3 819,419 - HMPREF1058_RS15855 0.18 -3.5 819,421 + HMPREF1058_RS15855 0.19 -0.9 819,421 + HMPREF1058_RS15855 0.19 +2.0 819,422 - HMPREF1058_RS15855 0.19 -1.7 819,424 - HMPREF1058_RS15855 0.19 -2.6 819,456 + HMPREF1058_RS15855 0.24 -1.0 819,562 + HMPREF1058_RS15855 0.42 -2.4 819,563 - HMPREF1058_RS15855 0.42 -3.4 819,566 + HMPREF1058_RS15855 0.42 -2.5 819,566 + HMPREF1058_RS15855 0.42 -2.8 819,569 + HMPREF1058_RS15855 0.43 +0.0 819,573 + HMPREF1058_RS15855 0.43 -1.0 819,643 + HMPREF1058_RS15855 0.55 -0.0 819,819 + HMPREF1058_RS15855 0.84 -3.3 819,819 + HMPREF1058_RS15855 0.84 -0.9 819,841 - HMPREF1058_RS15855 0.87 -3.5 819,841 - HMPREF1058_RS15855 0.87 -2.0 819,844 - HMPREF1058_RS15855 0.88 -5.2 819,890 + -2.8 819,950 - -3.7 820,016 - -0.6 820,218 + HMPREF1058_RS15850 0.22 -2.4 820,275 - HMPREF1058_RS15850 0.26 -1.0 820,349 - HMPREF1058_RS15850 0.31 -2.4 820,365 + HMPREF1058_RS15850 0.33 -4.8 820,370 - HMPREF1058_RS15850 0.33 -1.4 820,383 + HMPREF1058_RS15850 0.34 -4.9 820,409 + HMPREF1058_RS15850 0.36 -2.4 820,427 + HMPREF1058_RS15850 0.37 -3.4 820,548 + HMPREF1058_RS15850 0.46 -1.8 820,548 + HMPREF1058_RS15850 0.46 -2.8 820,610 - HMPREF1058_RS15850 0.50 -1.9 820,613 + HMPREF1058_RS15850 0.51 -2.7 820,646 + HMPREF1058_RS15850 0.53 -3.8 820,647 - HMPREF1058_RS15850 0.53 -1.6 820,781 - HMPREF1058_RS15850 0.63 +0.3 820,791 + HMPREF1058_RS15850 0.63 -0.5 820,967 + HMPREF1058_RS15850 0.76 -1.7 820,967 + HMPREF1058_RS15850 0.76 -3.6 820,968 - HMPREF1058_RS15850 0.76 -2.1 820,969 + HMPREF1058_RS15850 0.76 -3.4 820,987 - HMPREF1058_RS15850 0.78 -3.7 820,987 - HMPREF1058_RS15850 0.78 -1.6 821,075 - HMPREF1058_RS15850 0.84 -3.8 821,084 - HMPREF1058_RS15850 0.85 -3.5 821,112 + HMPREF1058_RS15850 0.87 -3.3 821,124 - HMPREF1058_RS15850 0.88 -2.2 821,127 + HMPREF1058_RS15850 0.88 -2.1 821,127 + HMPREF1058_RS15850 0.88 -1.8 821,128 - HMPREF1058_RS15850 0.88 -2.4 821,128 - HMPREF1058_RS15850 0.88 -4.2 821,131 + HMPREF1058_RS15850 0.88 -3.5 821,150 + HMPREF1058_RS15850 0.89 +1.0 821,151 - HMPREF1058_RS15850 0.90 -4.3 821,155 - HMPREF1058_RS15850 0.90 -1.6 821,156 + HMPREF1058_RS15850 0.90 -3.4 821,156 + HMPREF1058_RS15850 0.90 -2.1 821,156 + HMPREF1058_RS15850 0.90 -1.2 821,385 - -1.3 821,405 - HMPREF1058_RS15845 0.12 -3.5 821,415 + HMPREF1058_RS15845 0.13 +0.6 821,415 + HMPREF1058_RS15845 0.13 +0.4 821,415 + HMPREF1058_RS15845 0.13 -0.1 821,415 + HMPREF1058_RS15845 0.13 -0.6 821,416 - HMPREF1058_RS15845 0.13 +0.4 821,416 - HMPREF1058_RS15845 0.13 +1.2 821,416 - HMPREF1058_RS15845 0.13 +1.0 821,417 + HMPREF1058_RS15845 0.14 -1.0 821,437 + HMPREF1058_RS15845 0.16 +0.3 821,510 + HMPREF1058_RS15845 0.25 +0.6 821,517 + HMPREF1058_RS15845 0.26 +2.2 821,518 - HMPREF1058_RS15845 0.26 +1.4 821,540 - HMPREF1058_RS15845 0.29 +0.7 821,557 + HMPREF1058_RS15845 0.31 -1.7 821,557 + HMPREF1058_RS15845 0.31 -1.4 821,563 + HMPREF1058_RS15845 0.31 -0.7 821,563 + HMPREF1058_RS15845 0.31 -1.2 821,564 - HMPREF1058_RS15845 0.32 -0.1 821,581 - HMPREF1058_RS15845 0.34 -2.3 821,591 + HMPREF1058_RS15845 0.35 -1.1 821,592 - HMPREF1058_RS15845 0.35 -1.3 821,600 + HMPREF1058_RS15845 0.36 +0.1 821,615 + +0.7 821,661 - HMPREF1058_RS15845 0.44 -1.2 821,669 + HMPREF1058_RS15845 0.45 +2.9 821,675 + HMPREF1058_RS15845 0.45 +0.1 821,840 - HMPREF1058_RS15845 0.66 +0.1 821,877 - HMPREF1058_RS15845 0.70 +0.3 821,877 - HMPREF1058_RS15845 0.70 +0.4 821,878 + HMPREF1058_RS15845 0.70 +0.6 821,909 + HMPREF1058_RS15845 0.74 +0.8 821,920 + HMPREF1058_RS15845 0.75 +0.9 821,925 - HMPREF1058_RS15845 0.76 +0.7 821,935 + HMPREF1058_RS15845 0.77 -0.2 822,158 + -1.3 822,174 + +0.6 822,174 + +1.8 822,195 - -2.1 822,248 + HMPREF1058_RS15840 0.12 -1.2 822,249 - HMPREF1058_RS15840 0.12 -0.4
Or see this region's nucleotide sequence