Experiment: D-Galactose 20 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS03515 and HMPREF1058_RS03510 are separated by 33 nucleotides HMPREF1058_RS03510 and HMPREF1058_RS03505 are separated by 1 nucleotides HMPREF1058_RS03505 and HMPREF1058_RS03500 are separated by 115 nucleotides
HMPREF1058_RS03515: HMPREF1058_RS03515 - phenylalanine--tRNA ligase subunit beta, at 262,781 to 265,243
_RS03515
HMPREF1058_RS03510: HMPREF1058_RS03510 - YebC/PmpR family DNA-binding transcriptional regulator, at 265,277 to 266,017
_RS03510
HMPREF1058_RS03505: HMPREF1058_RS03505 - TIGR03905 family TSCPD domain-containing protein, at 266,019 to 266,264
_RS03505
HMPREF1058_RS03500: HMPREF1058_RS03500 - DEAD/DEAH box helicase, at 266,380 to 268,743
_RS03500
Position (kb) 265
266
267 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 265.241 kb on + strand at 265.241 kb on + strand at 265.241 kb on + strand at 265.262 kb on + strand at 265.262 kb on + strand at 265.297 kb on + strand at 265.371 kb on + strand, within HMPREF1058_RS03510 at 265.372 kb on - strand, within HMPREF1058_RS03510 at 265.432 kb on + strand, within HMPREF1058_RS03510 at 265.433 kb on - strand, within HMPREF1058_RS03510 at 265.438 kb on + strand, within HMPREF1058_RS03510 at 265.438 kb on + strand, within HMPREF1058_RS03510 at 265.527 kb on - strand, within HMPREF1058_RS03510 at 265.558 kb on - strand, within HMPREF1058_RS03510 at 265.643 kb on - strand, within HMPREF1058_RS03510 at 265.676 kb on - strand, within HMPREF1058_RS03510 at 265.747 kb on + strand, within HMPREF1058_RS03510 at 265.748 kb on - strand, within HMPREF1058_RS03510 at 265.753 kb on - strand, within HMPREF1058_RS03510 at 265.790 kb on - strand, within HMPREF1058_RS03510 at 265.800 kb on - strand, within HMPREF1058_RS03510 at 265.817 kb on + strand, within HMPREF1058_RS03510 at 265.880 kb on + strand, within HMPREF1058_RS03510 at 265.880 kb on + strand, within HMPREF1058_RS03510 at 265.881 kb on - strand, within HMPREF1058_RS03510 at 265.982 kb on - strand at 265.982 kb on - strand at 266.034 kb on - strand at 266.074 kb on + strand, within HMPREF1058_RS03505 at 266.128 kb on + strand, within HMPREF1058_RS03505 at 266.128 kb on + strand, within HMPREF1058_RS03505 at 266.135 kb on + strand, within HMPREF1058_RS03505 at 266.233 kb on + strand, within HMPREF1058_RS03505 at 266.233 kb on + strand, within HMPREF1058_RS03505 at 266.262 kb on + strand at 266.286 kb on + strand at 266.322 kb on - strand at 266.323 kb on + strand at 266.323 kb on + strand at 266.323 kb on + strand at 266.324 kb on - strand at 266.324 kb on - strand at 266.326 kb on + strand at 266.326 kb on + strand at 266.326 kb on + strand at 266.327 kb on - strand at 266.557 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Galactose 20 mM (C) remove 265,241 + +0.5 265,241 + +0.3 265,241 + -2.7 265,262 + +1.3 265,262 + -0.8 265,297 + -0.4 265,371 + HMPREF1058_RS03510 0.13 -0.4 265,372 - HMPREF1058_RS03510 0.13 -2.4 265,432 + HMPREF1058_RS03510 0.21 -4.7 265,433 - HMPREF1058_RS03510 0.21 -1.3 265,438 + HMPREF1058_RS03510 0.22 -2.0 265,438 + HMPREF1058_RS03510 0.22 -1.1 265,527 - HMPREF1058_RS03510 0.34 -1.6 265,558 - HMPREF1058_RS03510 0.38 -3.4 265,643 - HMPREF1058_RS03510 0.49 -1.3 265,676 - HMPREF1058_RS03510 0.54 -0.6 265,747 + HMPREF1058_RS03510 0.63 -2.1 265,748 - HMPREF1058_RS03510 0.64 -2.2 265,753 - HMPREF1058_RS03510 0.64 -3.1 265,790 - HMPREF1058_RS03510 0.69 -2.0 265,800 - HMPREF1058_RS03510 0.71 -2.4 265,817 + HMPREF1058_RS03510 0.73 -4.5 265,880 + HMPREF1058_RS03510 0.81 -1.7 265,880 + HMPREF1058_RS03510 0.81 -2.8 265,881 - HMPREF1058_RS03510 0.82 -1.6 265,982 - -2.8 265,982 - -2.2 266,034 - +0.3 266,074 + HMPREF1058_RS03505 0.22 -0.6 266,128 + HMPREF1058_RS03505 0.44 +0.0 266,128 + HMPREF1058_RS03505 0.44 +0.6 266,135 + HMPREF1058_RS03505 0.47 +1.0 266,233 + HMPREF1058_RS03505 0.87 -1.6 266,233 + HMPREF1058_RS03505 0.87 +0.5 266,262 + +1.3 266,286 + -0.3 266,322 - +0.5 266,323 + +1.2 266,323 + +1.9 266,323 + +2.5 266,324 - -0.5 266,324 - +2.2 266,326 + -2.6 266,326 + +0.3 266,326 + -0.4 266,327 - -0.7 266,557 - -2.2
Or see this region's nucleotide sequence