Strain Fitness in Rahnella sp. WP5 around EX31_RS24260

Experiment: L-Serine (N); RCH2 media; shaking

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS24255 and EX31_RS24260 are separated by 208 nucleotidesEX31_RS24260 and EX31_RS24265 are separated by 6 nucleotidesEX31_RS24265 and EX31_RS24270 are separated by 66 nucleotides EX31_RS24255: EX31_RS24255 - glucans biosynthesis glucosyltransferase MdoH, at 618,406 to 620,988 _RS24255 EX31_RS24260: EX31_RS24260 - YceK/YidQ family lipoprotein, at 621,197 to 621,442 _RS24260 EX31_RS24265: EX31_RS24265 - secY/secA suppressor protein, at 621,449 to 621,856 _RS24265 EX31_RS24270: EX31_RS24270 - hypothetical protein, at 621,923 to 622,207 _RS24270 Position (kb) 621 622Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 620.283 kb on - strand, within EX31_RS24255at 620.285 kb on + strand, within EX31_RS24255at 620.285 kb on + strand, within EX31_RS24255at 620.285 kb on + strand, within EX31_RS24255at 620.297 kb on + strand, within EX31_RS24255at 620.297 kb on + strand, within EX31_RS24255at 620.301 kb on + strand, within EX31_RS24255at 620.301 kb on + strand, within EX31_RS24255at 620.301 kb on + strand, within EX31_RS24255at 620.301 kb on + strand, within EX31_RS24255at 620.301 kb on + strand, within EX31_RS24255at 620.301 kb on + strand, within EX31_RS24255at 620.301 kb on + strand, within EX31_RS24255at 620.301 kb on + strand, within EX31_RS24255at 620.301 kb on + strand, within EX31_RS24255at 620.301 kb on + strand, within EX31_RS24255at 620.301 kb on + strand, within EX31_RS24255at 620.301 kb on + strand, within EX31_RS24255at 620.301 kb on + strand, within EX31_RS24255at 620.301 kb on + strand, within EX31_RS24255at 620.301 kb on + strand, within EX31_RS24255at 620.301 kb on + strand, within EX31_RS24255at 620.301 kb on + strand, within EX31_RS24255at 620.301 kb on + strand, within EX31_RS24255at 620.301 kb on + strand, within EX31_RS24255at 620.301 kb on + strand, within EX31_RS24255at 620.301 kb on + strand, within EX31_RS24255at 620.301 kb on + strand, within EX31_RS24255at 620.301 kb on + strand, within EX31_RS24255at 620.301 kb on + strand, within EX31_RS24255at 620.301 kb on + strand, within EX31_RS24255at 620.301 kb on + strand, within EX31_RS24255at 620.302 kb on - strand, within EX31_RS24255at 620.302 kb on - strand, within EX31_RS24255at 620.302 kb on - strand, within EX31_RS24255at 620.568 kb on + strand, within EX31_RS24255at 620.639 kb on - strand, within EX31_RS24255at 620.808 kb on + strandat 620.917 kb on + strandat 620.917 kb on + strandat 620.917 kb on + strandat 620.917 kb on + strandat 620.917 kb on + strandat 620.917 kb on + strandat 620.917 kb on + strandat 620.920 kb on + strandat 620.920 kb on + strandat 620.931 kb on - strandat 620.931 kb on - strandat 620.976 kb on + strandat 620.977 kb on - strandat 620.977 kb on - strandat 621.021 kb on + strandat 621.034 kb on - strandat 621.034 kb on - strandat 621.073 kb on + strandat 621.131 kb on - strandat 621.211 kb on + strandat 621.272 kb on - strand, within EX31_RS24260at 621.314 kb on + strand, within EX31_RS24260at 621.434 kb on + strandat 621.440 kb on + strandat 621.446 kb on - strandat 621.451 kb on - strandat 621.509 kb on - strand, within EX31_RS24265at 621.543 kb on + strand, within EX31_RS24265at 621.544 kb on - strand, within EX31_RS24265at 621.565 kb on - strand, within EX31_RS24265at 621.565 kb on - strand, within EX31_RS24265at 621.565 kb on - strand, within EX31_RS24265at 621.602 kb on + strand, within EX31_RS24265at 621.603 kb on - strand, within EX31_RS24265at 621.628 kb on + strand, within EX31_RS24265at 621.628 kb on + strand, within EX31_RS24265at 621.732 kb on + strand, within EX31_RS24265at 621.733 kb on - strand, within EX31_RS24265at 621.827 kb on - strandat 621.847 kb on - strandat 621.847 kb on - strandat 621.856 kb on + strandat 621.857 kb on - strandat 621.895 kb on + strandat 621.896 kb on - strandat 621.951 kb on + strandat 621.954 kb on - strand, within EX31_RS24270at 621.961 kb on + strand, within EX31_RS24270at 621.961 kb on + strand, within EX31_RS24270at 622.017 kb on + strand, within EX31_RS24270at 622.017 kb on + strand, within EX31_RS24270at 622.045 kb on - strand, within EX31_RS24270at 622.062 kb on - strand, within EX31_RS24270at 622.083 kb on - strand, within EX31_RS24270at 622.104 kb on + strand, within EX31_RS24270at 622.119 kb on - strand, within EX31_RS24270at 622.119 kb on - strand, within EX31_RS24270at 622.138 kb on + strand, within EX31_RS24270at 622.287 kb on - strandat 622.346 kb on - strandat 622.346 kb on - strandat 622.368 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (N); RCH2 media; shaking
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620,283 - EX31_RS24255 0.73 +1.7
620,285 + EX31_RS24255 0.73 +0.4
620,285 + EX31_RS24255 0.73 -1.0
620,285 + EX31_RS24255 0.73 +0.8
620,297 + EX31_RS24255 0.73 +0.8
620,297 + EX31_RS24255 0.73 -0.9
620,301 + EX31_RS24255 0.73 +0.5
620,301 + EX31_RS24255 0.73 +0.7
620,301 + EX31_RS24255 0.73 +1.2
620,301 + EX31_RS24255 0.73 +0.1
620,301 + EX31_RS24255 0.73 -0.8
620,301 + EX31_RS24255 0.73 +0.3
620,301 + EX31_RS24255 0.73 +1.8
620,301 + EX31_RS24255 0.73 +0.3
620,301 + EX31_RS24255 0.73 +0.3
620,301 + EX31_RS24255 0.73 +0.5
620,301 + EX31_RS24255 0.73 +1.1
620,301 + EX31_RS24255 0.73 +0.3
620,301 + EX31_RS24255 0.73 -0.7
620,301 + EX31_RS24255 0.73 +1.8
620,301 + EX31_RS24255 0.73 +3.1
620,301 + EX31_RS24255 0.73 +1.0
620,301 + EX31_RS24255 0.73 -1.5
620,301 + EX31_RS24255 0.73 -0.3
620,301 + EX31_RS24255 0.73 -0.2
620,301 + EX31_RS24255 0.73 +1.1
620,301 + EX31_RS24255 0.73 +0.5
620,301 + EX31_RS24255 0.73 +0.1
620,301 + EX31_RS24255 0.73 +0.9
620,301 + EX31_RS24255 0.73 -0.7
620,301 + EX31_RS24255 0.73 -2.4
620,301 + EX31_RS24255 0.73 -0.5
620,302 - EX31_RS24255 0.73 +0.7
620,302 - EX31_RS24255 0.73 -0.8
620,302 - EX31_RS24255 0.73 +1.3
620,568 + EX31_RS24255 0.84 +1.4
620,639 - EX31_RS24255 0.86 +0.7
620,808 + -1.8
620,917 + +0.3
620,917 + +0.7
620,917 + +0.1
620,917 + +0.9
620,917 + -0.0
620,917 + -0.2
620,917 + +0.3
620,920 + +1.3
620,920 + -0.5
620,931 - -1.3
620,931 - -0.5
620,976 + -0.0
620,977 - +0.1
620,977 - -0.3
621,021 + -0.2
621,034 - +0.9
621,034 - +1.1
621,073 + +0.5
621,131 - -0.3
621,211 + +0.7
621,272 - EX31_RS24260 0.30 -1.1
621,314 + EX31_RS24260 0.48 -0.9
621,434 + -0.4
621,440 + +0.7
621,446 - +0.1
621,451 - -0.7
621,509 - EX31_RS24265 0.15 +0.4
621,543 + EX31_RS24265 0.23 +0.7
621,544 - EX31_RS24265 0.23 +2.0
621,565 - EX31_RS24265 0.28 -0.4
621,565 - EX31_RS24265 0.28 -0.9
621,565 - EX31_RS24265 0.28 -0.7
621,602 + EX31_RS24265 0.38 -0.8
621,603 - EX31_RS24265 0.38 -0.4
621,628 + EX31_RS24265 0.44 +4.5
621,628 + EX31_RS24265 0.44 -0.7
621,732 + EX31_RS24265 0.69 -0.9
621,733 - EX31_RS24265 0.70 +0.3
621,827 - +0.6
621,847 - -0.5
621,847 - -2.1
621,856 + +0.8
621,857 - +0.8
621,895 + +1.1
621,896 - +0.1
621,951 + +0.5
621,954 - EX31_RS24270 0.11 +0.2
621,961 + EX31_RS24270 0.13 +3.8
621,961 + EX31_RS24270 0.13 -2.1
622,017 + EX31_RS24270 0.33 +0.3
622,017 + EX31_RS24270 0.33 +0.3
622,045 - EX31_RS24270 0.43 +0.7
622,062 - EX31_RS24270 0.49 -0.2
622,083 - EX31_RS24270 0.56 -0.2
622,104 + EX31_RS24270 0.64 -0.1
622,119 - EX31_RS24270 0.69 -0.0
622,119 - EX31_RS24270 0.69 -0.7
622,138 + EX31_RS24270 0.75 -0.5
622,287 - +1.4
622,346 - -0.8
622,346 - +0.9
622,368 - -1.1

Or see this region's nucleotide sequence