Strain Fitness in Rahnella sp. WP5 around EX31_RS10305

Experiment: L-Serine (N); RCH2 media; shaking

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS10300 and EX31_RS10305 are separated by 0 nucleotidesEX31_RS10305 and EX31_RS10310 are separated by 262 nucleotides EX31_RS10300: EX31_RS10300 - LysR family transcriptional regulator, at 274,164 to 275,099 _RS10300 EX31_RS10305: EX31_RS10305 - PTS transporter subunit EIIB, at 275,100 to 275,366 _RS10305 EX31_RS10310: EX31_RS10310 - 2-hydroxyacid dehydrogenase, at 275,629 to 276,579 _RS10310 Position (kb) 275 276Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 274.145 kb on + strandat 274.145 kb on + strandat 274.248 kb on - strandat 274.262 kb on + strand, within EX31_RS10300at 274.262 kb on + strand, within EX31_RS10300at 274.262 kb on + strand, within EX31_RS10300at 274.263 kb on - strand, within EX31_RS10300at 274.268 kb on + strand, within EX31_RS10300at 274.268 kb on + strand, within EX31_RS10300at 274.271 kb on + strand, within EX31_RS10300at 274.385 kb on + strand, within EX31_RS10300at 274.385 kb on + strand, within EX31_RS10300at 274.418 kb on + strand, within EX31_RS10300at 274.484 kb on - strand, within EX31_RS10300at 274.503 kb on + strand, within EX31_RS10300at 274.525 kb on + strand, within EX31_RS10300at 274.525 kb on + strand, within EX31_RS10300at 274.529 kb on + strand, within EX31_RS10300at 274.570 kb on + strand, within EX31_RS10300at 274.793 kb on + strand, within EX31_RS10300at 274.793 kb on + strand, within EX31_RS10300at 274.793 kb on + strand, within EX31_RS10300at 274.793 kb on + strand, within EX31_RS10300at 274.794 kb on - strand, within EX31_RS10300at 274.794 kb on - strand, within EX31_RS10300at 274.839 kb on - strand, within EX31_RS10300at 274.839 kb on - strand, within EX31_RS10300at 274.856 kb on + strand, within EX31_RS10300at 274.856 kb on + strand, within EX31_RS10300at 274.857 kb on - strand, within EX31_RS10300at 274.935 kb on + strand, within EX31_RS10300at 274.936 kb on - strand, within EX31_RS10300at 274.936 kb on - strand, within EX31_RS10300at 274.955 kb on + strand, within EX31_RS10300at 274.956 kb on - strand, within EX31_RS10300at 274.957 kb on + strand, within EX31_RS10300at 274.957 kb on + strand, within EX31_RS10300at 274.958 kb on - strand, within EX31_RS10300at 274.958 kb on - strand, within EX31_RS10300at 274.958 kb on - strand, within EX31_RS10300at 275.004 kb on + strand, within EX31_RS10300at 275.004 kb on + strand, within EX31_RS10300at 275.004 kb on + strand, within EX31_RS10300at 275.004 kb on + strand, within EX31_RS10300at 275.005 kb on - strand, within EX31_RS10300at 275.005 kb on - strand, within EX31_RS10300at 275.005 kb on - strand, within EX31_RS10300at 275.005 kb on - strand, within EX31_RS10300at 275.006 kb on + strandat 275.102 kb on - strandat 275.205 kb on + strand, within EX31_RS10305at 275.232 kb on + strand, within EX31_RS10305at 275.232 kb on + strand, within EX31_RS10305at 275.233 kb on - strand, within EX31_RS10305at 275.283 kb on - strand, within EX31_RS10305at 275.283 kb on - strand, within EX31_RS10305at 275.293 kb on + strand, within EX31_RS10305at 275.293 kb on + strand, within EX31_RS10305at 275.293 kb on + strand, within EX31_RS10305at 275.293 kb on + strand, within EX31_RS10305at 275.294 kb on - strand, within EX31_RS10305at 275.294 kb on - strand, within EX31_RS10305at 275.294 kb on - strand, within EX31_RS10305at 275.303 kb on + strand, within EX31_RS10305at 275.304 kb on - strand, within EX31_RS10305at 275.340 kb on + strandat 275.341 kb on - strandat 275.387 kb on - strandat 275.405 kb on + strandat 275.405 kb on + strandat 275.405 kb on + strandat 275.406 kb on - strandat 275.406 kb on - strandat 275.406 kb on - strandat 275.406 kb on - strandat 275.406 kb on - strandat 275.406 kb on - strandat 275.463 kb on + strandat 275.536 kb on + strandat 275.536 kb on + strandat 275.536 kb on + strandat 275.537 kb on - strandat 275.537 kb on - strandat 275.537 kb on - strandat 275.574 kb on + strandat 275.575 kb on - strandat 275.604 kb on - strandat 275.670 kb on - strandat 275.724 kb on + strand, within EX31_RS10310at 275.725 kb on - strand, within EX31_RS10310at 275.725 kb on - strand, within EX31_RS10310at 275.725 kb on - strand, within EX31_RS10310at 275.725 kb on - strand, within EX31_RS10310at 275.887 kb on - strand, within EX31_RS10310at 275.923 kb on + strand, within EX31_RS10310at 275.924 kb on - strand, within EX31_RS10310at 276.007 kb on + strand, within EX31_RS10310at 276.007 kb on + strand, within EX31_RS10310at 276.008 kb on - strand, within EX31_RS10310at 276.008 kb on - strand, within EX31_RS10310at 276.008 kb on - strand, within EX31_RS10310at 276.008 kb on - strand, within EX31_RS10310at 276.008 kb on - strand, within EX31_RS10310at 276.008 kb on - strand, within EX31_RS10310at 276.026 kb on + strand, within EX31_RS10310at 276.072 kb on + strand, within EX31_RS10310at 276.072 kb on + strand, within EX31_RS10310at 276.073 kb on - strand, within EX31_RS10310at 276.075 kb on + strand, within EX31_RS10310at 276.075 kb on + strand, within EX31_RS10310at 276.075 kb on + strand, within EX31_RS10310at 276.075 kb on + strand, within EX31_RS10310at 276.076 kb on - strand, within EX31_RS10310at 276.076 kb on - strand, within EX31_RS10310at 276.076 kb on - strand, within EX31_RS10310at 276.154 kb on - strand, within EX31_RS10310at 276.239 kb on - strand, within EX31_RS10310at 276.277 kb on + strand, within EX31_RS10310at 276.333 kb on + strand, within EX31_RS10310

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (N); RCH2 media; shaking
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274,145 + +1.0
274,145 + -0.4
274,248 - -1.0
274,262 + EX31_RS10300 0.10 +0.3
274,262 + EX31_RS10300 0.10 +1.5
274,262 + EX31_RS10300 0.10 -2.4
274,263 - EX31_RS10300 0.11 +0.5
274,268 + EX31_RS10300 0.11 +2.0
274,268 + EX31_RS10300 0.11 +1.1
274,271 + EX31_RS10300 0.11 +0.5
274,385 + EX31_RS10300 0.24 +0.9
274,385 + EX31_RS10300 0.24 +0.6
274,418 + EX31_RS10300 0.27 -0.4
274,484 - EX31_RS10300 0.34 +0.5
274,503 + EX31_RS10300 0.36 -0.1
274,525 + EX31_RS10300 0.39 +1.2
274,525 + EX31_RS10300 0.39 -0.6
274,529 + EX31_RS10300 0.39 -1.8
274,570 + EX31_RS10300 0.43 +0.0
274,793 + EX31_RS10300 0.67 +1.2
274,793 + EX31_RS10300 0.67 -0.6
274,793 + EX31_RS10300 0.67 +0.1
274,793 + EX31_RS10300 0.67 -0.5
274,794 - EX31_RS10300 0.67 +0.9
274,794 - EX31_RS10300 0.67 +0.5
274,839 - EX31_RS10300 0.72 +1.2
274,839 - EX31_RS10300 0.72 +0.1
274,856 + EX31_RS10300 0.74 +0.8
274,856 + EX31_RS10300 0.74 -0.2
274,857 - EX31_RS10300 0.74 +1.1
274,935 + EX31_RS10300 0.82 +1.2
274,936 - EX31_RS10300 0.82 +0.5
274,936 - EX31_RS10300 0.82 -0.5
274,955 + EX31_RS10300 0.85 +0.2
274,956 - EX31_RS10300 0.85 +0.7
274,957 + EX31_RS10300 0.85 +0.7
274,957 + EX31_RS10300 0.85 +1.0
274,958 - EX31_RS10300 0.85 -1.0
274,958 - EX31_RS10300 0.85 -0.3
274,958 - EX31_RS10300 0.85 +0.1
275,004 + EX31_RS10300 0.90 +0.3
275,004 + EX31_RS10300 0.90 -0.1
275,004 + EX31_RS10300 0.90 +0.4
275,004 + EX31_RS10300 0.90 +0.2
275,005 - EX31_RS10300 0.90 -1.5
275,005 - EX31_RS10300 0.90 +2.5
275,005 - EX31_RS10300 0.90 +0.3
275,005 - EX31_RS10300 0.90 -0.3
275,006 + +0.7
275,102 - +1.5
275,205 + EX31_RS10305 0.39 +0.7
275,232 + EX31_RS10305 0.49 -0.2
275,232 + EX31_RS10305 0.49 +0.8
275,233 - EX31_RS10305 0.50 +0.9
275,283 - EX31_RS10305 0.69 +0.9
275,283 - EX31_RS10305 0.69 -1.2
275,293 + EX31_RS10305 0.72 -0.7
275,293 + EX31_RS10305 0.72 -0.3
275,293 + EX31_RS10305 0.72 +2.1
275,293 + EX31_RS10305 0.72 -0.2
275,294 - EX31_RS10305 0.73 +0.9
275,294 - EX31_RS10305 0.73 +0.9
275,294 - EX31_RS10305 0.73 -0.5
275,303 + EX31_RS10305 0.76 +1.3
275,304 - EX31_RS10305 0.76 +0.6
275,340 + +0.8
275,341 - +1.0
275,387 - +0.8
275,405 + -1.8
275,405 + +1.9
275,405 + +0.9
275,406 - +1.8
275,406 - +1.5
275,406 - +0.3
275,406 - -0.8
275,406 - -0.8
275,406 - +0.6
275,463 + -0.7
275,536 + -1.1
275,536 + +1.6
275,536 + +1.0
275,537 - -1.2
275,537 - -2.1
275,537 - -1.2
275,574 + +0.2
275,575 - +0.2
275,604 - +0.9
275,670 - +1.5
275,724 + EX31_RS10310 0.10 -1.0
275,725 - EX31_RS10310 0.10 -0.5
275,725 - EX31_RS10310 0.10 +0.7
275,725 - EX31_RS10310 0.10 +1.1
275,725 - EX31_RS10310 0.10 +0.2
275,887 - EX31_RS10310 0.27 -0.9
275,923 + EX31_RS10310 0.31 +0.8
275,924 - EX31_RS10310 0.31 +0.6
276,007 + EX31_RS10310 0.40 +0.5
276,007 + EX31_RS10310 0.40 -2.8
276,008 - EX31_RS10310 0.40 +2.0
276,008 - EX31_RS10310 0.40 +0.9
276,008 - EX31_RS10310 0.40 +0.3
276,008 - EX31_RS10310 0.40 +1.9
276,008 - EX31_RS10310 0.40 +0.8
276,008 - EX31_RS10310 0.40 +0.0
276,026 + EX31_RS10310 0.42 +0.5
276,072 + EX31_RS10310 0.47 +1.1
276,072 + EX31_RS10310 0.47 +3.1
276,073 - EX31_RS10310 0.47 +0.5
276,075 + EX31_RS10310 0.47 -1.1
276,075 + EX31_RS10310 0.47 +0.8
276,075 + EX31_RS10310 0.47 +0.2
276,075 + EX31_RS10310 0.47 -0.2
276,076 - EX31_RS10310 0.47 +0.9
276,076 - EX31_RS10310 0.47 +1.3
276,076 - EX31_RS10310 0.47 -0.2
276,154 - EX31_RS10310 0.55 +1.4
276,239 - EX31_RS10310 0.64 +0.8
276,277 + EX31_RS10310 0.68 +0.0
276,333 + EX31_RS10310 0.74 +0.5

Or see this region's nucleotide sequence