Strain Fitness in Rahnella sp. WP5 around EX31_RS10285

Experiment: L-Serine (N); RCH2 media; shaking

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS10280 and EX31_RS10285 are separated by 35 nucleotidesEX31_RS10285 and EX31_RS10290 are separated by 2 nucleotides EX31_RS10280: EX31_RS10280 - alpha-glucosidase, at 269,514 to 270,875 _RS10280 EX31_RS10285: EX31_RS10285 - carbohydrate ABC transporter permease, at 270,911 to 271,756 _RS10285 EX31_RS10290: EX31_RS10290 - sugar ABC transporter permease, at 271,759 to 272,739 _RS10290 Position (kb) 270 271 272Strain fitness (log2 ratio) -2 -1 0 1 2 3at 269.920 kb on + strand, within EX31_RS10280at 269.920 kb on + strand, within EX31_RS10280at 269.921 kb on - strand, within EX31_RS10280at 269.921 kb on - strand, within EX31_RS10280at 269.937 kb on - strand, within EX31_RS10280at 269.990 kb on - strand, within EX31_RS10280at 269.990 kb on - strand, within EX31_RS10280at 270.017 kb on + strand, within EX31_RS10280at 270.076 kb on + strand, within EX31_RS10280at 270.077 kb on - strand, within EX31_RS10280at 270.137 kb on + strand, within EX31_RS10280at 270.154 kb on + strand, within EX31_RS10280at 270.154 kb on + strand, within EX31_RS10280at 270.155 kb on - strand, within EX31_RS10280at 270.193 kb on + strand, within EX31_RS10280at 270.194 kb on - strand, within EX31_RS10280at 270.223 kb on + strand, within EX31_RS10280at 270.224 kb on - strand, within EX31_RS10280at 270.234 kb on - strand, within EX31_RS10280at 270.247 kb on + strand, within EX31_RS10280at 270.259 kb on - strand, within EX31_RS10280at 270.437 kb on - strand, within EX31_RS10280at 270.441 kb on - strand, within EX31_RS10280at 270.441 kb on - strand, within EX31_RS10280at 270.441 kb on - strand, within EX31_RS10280at 270.506 kb on + strand, within EX31_RS10280at 270.506 kb on + strand, within EX31_RS10280at 270.821 kb on + strandat 270.856 kb on - strandat 270.875 kb on + strandat 270.964 kb on + strandat 270.964 kb on + strandat 270.965 kb on - strandat 271.057 kb on + strand, within EX31_RS10285at 271.057 kb on + strand, within EX31_RS10285at 271.058 kb on - strand, within EX31_RS10285at 271.118 kb on - strand, within EX31_RS10285at 271.118 kb on - strand, within EX31_RS10285at 271.268 kb on - strand, within EX31_RS10285at 271.288 kb on + strand, within EX31_RS10285at 271.289 kb on - strand, within EX31_RS10285at 271.315 kb on - strand, within EX31_RS10285at 271.344 kb on + strand, within EX31_RS10285at 271.344 kb on + strand, within EX31_RS10285at 271.345 kb on - strand, within EX31_RS10285at 271.345 kb on - strand, within EX31_RS10285at 271.375 kb on + strand, within EX31_RS10285at 271.375 kb on + strand, within EX31_RS10285at 271.376 kb on - strand, within EX31_RS10285at 271.535 kb on - strand, within EX31_RS10285at 271.578 kb on + strand, within EX31_RS10285at 271.578 kb on + strand, within EX31_RS10285at 271.579 kb on - strand, within EX31_RS10285at 271.641 kb on - strand, within EX31_RS10285at 271.641 kb on - strand, within EX31_RS10285at 271.662 kb on + strand, within EX31_RS10285at 271.663 kb on - strand, within EX31_RS10285at 271.663 kb on - strand, within EX31_RS10285at 271.761 kb on - strandat 271.761 kb on - strandat 271.936 kb on - strand, within EX31_RS10290at 271.937 kb on + strand, within EX31_RS10290at 271.938 kb on - strand, within EX31_RS10290at 271.938 kb on - strand, within EX31_RS10290at 271.938 kb on - strand, within EX31_RS10290at 272.072 kb on + strand, within EX31_RS10290at 272.209 kb on - strand, within EX31_RS10290at 272.469 kb on - strand, within EX31_RS10290at 272.471 kb on + strand, within EX31_RS10290at 272.498 kb on + strand, within EX31_RS10290at 272.499 kb on - strand, within EX31_RS10290at 272.499 kb on - strand, within EX31_RS10290at 272.561 kb on + strand, within EX31_RS10290at 272.653 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (N); RCH2 media; shaking
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269,920 + EX31_RS10280 0.30 +0.3
269,920 + EX31_RS10280 0.30 +1.2
269,921 - EX31_RS10280 0.30 -1.3
269,921 - EX31_RS10280 0.30 -0.8
269,937 - EX31_RS10280 0.31 -1.5
269,990 - EX31_RS10280 0.35 -0.1
269,990 - EX31_RS10280 0.35 -0.8
270,017 + EX31_RS10280 0.37 -0.5
270,076 + EX31_RS10280 0.41 -0.5
270,077 - EX31_RS10280 0.41 +0.0
270,137 + EX31_RS10280 0.46 +1.5
270,154 + EX31_RS10280 0.47 -0.9
270,154 + EX31_RS10280 0.47 -0.4
270,155 - EX31_RS10280 0.47 -0.0
270,193 + EX31_RS10280 0.50 +1.3
270,194 - EX31_RS10280 0.50 +0.1
270,223 + EX31_RS10280 0.52 +0.5
270,224 - EX31_RS10280 0.52 +1.1
270,234 - EX31_RS10280 0.53 -1.0
270,247 + EX31_RS10280 0.54 +0.4
270,259 - EX31_RS10280 0.55 +1.1
270,437 - EX31_RS10280 0.68 +1.3
270,441 - EX31_RS10280 0.68 +0.8
270,441 - EX31_RS10280 0.68 +0.6
270,441 - EX31_RS10280 0.68 +2.1
270,506 + EX31_RS10280 0.73 +0.5
270,506 + EX31_RS10280 0.73 +0.4
270,821 + +0.3
270,856 - -0.5
270,875 + -0.3
270,964 + +0.2
270,964 + +1.3
270,965 - +0.5
271,057 + EX31_RS10285 0.17 +0.5
271,057 + EX31_RS10285 0.17 +0.1
271,058 - EX31_RS10285 0.17 -0.5
271,118 - EX31_RS10285 0.24 +2.5
271,118 - EX31_RS10285 0.24 -2.3
271,268 - EX31_RS10285 0.42 -0.8
271,288 + EX31_RS10285 0.45 +0.2
271,289 - EX31_RS10285 0.45 +0.2
271,315 - EX31_RS10285 0.48 +0.2
271,344 + EX31_RS10285 0.51 -1.3
271,344 + EX31_RS10285 0.51 +0.4
271,345 - EX31_RS10285 0.51 -1.0
271,345 - EX31_RS10285 0.51 +1.5
271,375 + EX31_RS10285 0.55 +0.2
271,375 + EX31_RS10285 0.55 +0.8
271,376 - EX31_RS10285 0.55 +0.0
271,535 - EX31_RS10285 0.74 +1.0
271,578 + EX31_RS10285 0.79 +0.7
271,578 + EX31_RS10285 0.79 -0.7
271,579 - EX31_RS10285 0.79 -0.4
271,641 - EX31_RS10285 0.86 -0.3
271,641 - EX31_RS10285 0.86 -2.3
271,662 + EX31_RS10285 0.89 +0.0
271,663 - EX31_RS10285 0.89 +1.7
271,663 - EX31_RS10285 0.89 +0.0
271,761 - +0.1
271,761 - -1.7
271,936 - EX31_RS10290 0.18 +3.1
271,937 + EX31_RS10290 0.18 -0.3
271,938 - EX31_RS10290 0.18 +0.8
271,938 - EX31_RS10290 0.18 -1.5
271,938 - EX31_RS10290 0.18 -1.1
272,072 + EX31_RS10290 0.32 +1.1
272,209 - EX31_RS10290 0.46 -0.1
272,469 - EX31_RS10290 0.72 +0.5
272,471 + EX31_RS10290 0.73 +1.2
272,498 + EX31_RS10290 0.75 +0.9
272,499 - EX31_RS10290 0.75 +1.0
272,499 - EX31_RS10290 0.75 +1.1
272,561 + EX31_RS10290 0.82 +0.4
272,653 + -1.3

Or see this region's nucleotide sequence