Strain Fitness in Rahnella sp. WP5 around EX31_RS06610

Experiment: L-Serine (N); RCH2 media; shaking

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS06605 and EX31_RS06610 are separated by 0 nucleotidesEX31_RS06610 and EX31_RS06615 are separated by 1 nucleotidesEX31_RS06615 and EX31_RS06620 overlap by 1 nucleotides EX31_RS06605: EX31_RS06605 - electron transport complex subunit RsxD, at 95,948 to 97,000 _RS06605 EX31_RS06610: EX31_RS06610 - electron transport complex subunit RsxC, at 97,001 to 99,106 _RS06610 EX31_RS06615: EX31_RS06615 - electron transport complex subunit RsxB, at 99,108 to 99,674 _RS06615 EX31_RS06620: EX31_RS06620 - electron transport complex subunit RsxA, at 99,674 to 100,255 _RS06620 Position (kb) 97 98 99 100Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 96.015 kb on - strandat 96.015 kb on - strandat 96.075 kb on - strand, within EX31_RS06605at 96.255 kb on - strand, within EX31_RS06605at 96.255 kb on - strand, within EX31_RS06605at 96.481 kb on - strand, within EX31_RS06605at 96.503 kb on - strand, within EX31_RS06605at 96.503 kb on - strand, within EX31_RS06605at 96.558 kb on - strand, within EX31_RS06605at 96.558 kb on - strand, within EX31_RS06605at 96.619 kb on - strand, within EX31_RS06605at 96.619 kb on - strand, within EX31_RS06605at 96.619 kb on - strand, within EX31_RS06605at 96.624 kb on - strand, within EX31_RS06605at 96.624 kb on - strand, within EX31_RS06605at 96.624 kb on - strand, within EX31_RS06605at 96.624 kb on - strand, within EX31_RS06605at 96.624 kb on - strand, within EX31_RS06605at 96.624 kb on - strand, within EX31_RS06605at 96.624 kb on - strand, within EX31_RS06605at 96.624 kb on - strand, within EX31_RS06605at 96.624 kb on - strand, within EX31_RS06605at 96.743 kb on - strand, within EX31_RS06605at 96.816 kb on - strand, within EX31_RS06605at 96.917 kb on - strandat 96.947 kb on - strandat 96.971 kb on - strandat 96.971 kb on - strandat 96.971 kb on - strandat 97.002 kb on + strandat 97.003 kb on - strandat 97.445 kb on - strand, within EX31_RS06610at 97.786 kb on - strand, within EX31_RS06610at 97.789 kb on - strand, within EX31_RS06610at 97.789 kb on - strand, within EX31_RS06610at 97.805 kb on - strand, within EX31_RS06610at 97.821 kb on + strand, within EX31_RS06610at 97.822 kb on - strand, within EX31_RS06610at 97.822 kb on - strand, within EX31_RS06610at 97.822 kb on - strand, within EX31_RS06610at 97.822 kb on - strand, within EX31_RS06610at 97.822 kb on - strand, within EX31_RS06610at 97.822 kb on - strand, within EX31_RS06610at 97.920 kb on - strand, within EX31_RS06610at 98.115 kb on - strand, within EX31_RS06610at 98.249 kb on - strand, within EX31_RS06610at 98.367 kb on + strand, within EX31_RS06610at 98.435 kb on - strand, within EX31_RS06610at 98.574 kb on + strand, within EX31_RS06610at 98.574 kb on + strand, within EX31_RS06610at 98.574 kb on + strand, within EX31_RS06610at 98.575 kb on - strand, within EX31_RS06610at 98.575 kb on - strand, within EX31_RS06610at 98.575 kb on - strand, within EX31_RS06610at 98.575 kb on - strand, within EX31_RS06610at 98.575 kb on - strand, within EX31_RS06610at 98.575 kb on - strand, within EX31_RS06610at 98.575 kb on - strand, within EX31_RS06610at 98.575 kb on - strand, within EX31_RS06610at 98.575 kb on - strand, within EX31_RS06610at 98.575 kb on - strand, within EX31_RS06610at 98.575 kb on - strand, within EX31_RS06610at 98.575 kb on - strand, within EX31_RS06610at 98.575 kb on - strand, within EX31_RS06610at 98.759 kb on - strand, within EX31_RS06610at 98.910 kb on - strandat 98.910 kb on - strandat 98.978 kb on - strandat 98.978 kb on - strandat 99.050 kb on - strandat 99.101 kb on - strandat 99.101 kb on - strandat 99.101 kb on - strandat 99.110 kb on - strandat 99.110 kb on - strandat 99.110 kb on - strandat 99.241 kb on - strand, within EX31_RS06615at 99.241 kb on - strand, within EX31_RS06615at 99.241 kb on - strand, within EX31_RS06615at 99.241 kb on - strand, within EX31_RS06615at 99.241 kb on - strand, within EX31_RS06615at 99.241 kb on - strand, within EX31_RS06615at 99.241 kb on - strand, within EX31_RS06615at 99.241 kb on - strand, within EX31_RS06615at 99.241 kb on - strand, within EX31_RS06615at 99.241 kb on - strand, within EX31_RS06615at 99.241 kb on - strand, within EX31_RS06615at 99.241 kb on - strand, within EX31_RS06615at 99.241 kb on - strand, within EX31_RS06615at 99.262 kb on - strand, within EX31_RS06615at 99.262 kb on - strand, within EX31_RS06615at 99.262 kb on - strand, within EX31_RS06615at 99.309 kb on - strand, within EX31_RS06615at 99.309 kb on - strand, within EX31_RS06615at 99.309 kb on - strand, within EX31_RS06615at 99.309 kb on - strand, within EX31_RS06615at 99.309 kb on - strand, within EX31_RS06615at 99.309 kb on - strand, within EX31_RS06615at 99.346 kb on + strand, within EX31_RS06615at 99.347 kb on - strand, within EX31_RS06615at 99.462 kb on - strand, within EX31_RS06615at 99.462 kb on - strand, within EX31_RS06615at 99.462 kb on - strand, within EX31_RS06615at 99.462 kb on - strand, within EX31_RS06615at 99.497 kb on - strand, within EX31_RS06615at 99.497 kb on - strand, within EX31_RS06615at 99.675 kb on + strandat 99.676 kb on - strandat 99.704 kb on - strandat 99.711 kb on - strandat 99.850 kb on - strand, within EX31_RS06620at 100.025 kb on - strand, within EX31_RS06620at 100.034 kb on - strand, within EX31_RS06620at 100.034 kb on - strand, within EX31_RS06620at 100.097 kb on - strand, within EX31_RS06620at 100.097 kb on - strand, within EX31_RS06620

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (N); RCH2 media; shaking
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96,015 - -0.9
96,015 - -0.5
96,075 - EX31_RS06605 0.12 -0.2
96,255 - EX31_RS06605 0.29 -0.7
96,255 - EX31_RS06605 0.29 -2.7
96,481 - EX31_RS06605 0.51 -0.4
96,503 - EX31_RS06605 0.53 -2.5
96,503 - EX31_RS06605 0.53 -0.4
96,558 - EX31_RS06605 0.58 -2.6
96,558 - EX31_RS06605 0.58 -0.7
96,619 - EX31_RS06605 0.64 -0.6
96,619 - EX31_RS06605 0.64 -1.5
96,619 - EX31_RS06605 0.64 -0.0
96,624 - EX31_RS06605 0.64 +0.0
96,624 - EX31_RS06605 0.64 -1.1
96,624 - EX31_RS06605 0.64 -0.4
96,624 - EX31_RS06605 0.64 -0.8
96,624 - EX31_RS06605 0.64 -2.4
96,624 - EX31_RS06605 0.64 -0.0
96,624 - EX31_RS06605 0.64 -1.2
96,624 - EX31_RS06605 0.64 -0.1
96,624 - EX31_RS06605 0.64 -0.3
96,743 - EX31_RS06605 0.75 +0.7
96,816 - EX31_RS06605 0.82 -1.0
96,917 - -2.0
96,947 - -0.4
96,971 - -0.4
96,971 - +0.1
96,971 - -0.7
97,002 + -1.0
97,003 - +1.2
97,445 - EX31_RS06610 0.21 +2.0
97,786 - EX31_RS06610 0.37 +0.2
97,789 - EX31_RS06610 0.37 -0.8
97,789 - EX31_RS06610 0.37 +1.0
97,805 - EX31_RS06610 0.38 +0.0
97,821 + EX31_RS06610 0.39 -1.2
97,822 - EX31_RS06610 0.39 -2.0
97,822 - EX31_RS06610 0.39 -0.7
97,822 - EX31_RS06610 0.39 -0.3
97,822 - EX31_RS06610 0.39 -0.9
97,822 - EX31_RS06610 0.39 -1.7
97,822 - EX31_RS06610 0.39 -0.2
97,920 - EX31_RS06610 0.44 -1.4
98,115 - EX31_RS06610 0.53 -0.3
98,249 - EX31_RS06610 0.59 -0.6
98,367 + EX31_RS06610 0.65 -0.2
98,435 - EX31_RS06610 0.68 -0.3
98,574 + EX31_RS06610 0.75 +1.4
98,574 + EX31_RS06610 0.75 +1.0
98,574 + EX31_RS06610 0.75 +1.2
98,575 - EX31_RS06610 0.75 -1.8
98,575 - EX31_RS06610 0.75 -1.3
98,575 - EX31_RS06610 0.75 -0.3
98,575 - EX31_RS06610 0.75 -3.7
98,575 - EX31_RS06610 0.75 -2.0
98,575 - EX31_RS06610 0.75 +0.1
98,575 - EX31_RS06610 0.75 +0.6
98,575 - EX31_RS06610 0.75 -0.4
98,575 - EX31_RS06610 0.75 +0.4
98,575 - EX31_RS06610 0.75 -1.4
98,575 - EX31_RS06610 0.75 -0.2
98,575 - EX31_RS06610 0.75 -0.6
98,575 - EX31_RS06610 0.75 -0.9
98,759 - EX31_RS06610 0.83 -1.0
98,910 - -0.9
98,910 - -1.9
98,978 - +0.6
98,978 - -1.2
99,050 - -0.6
99,101 - +0.4
99,101 - +0.4
99,101 - -0.1
99,110 - -1.3
99,110 - +0.6
99,110 - +0.7
99,241 - EX31_RS06615 0.23 -1.5
99,241 - EX31_RS06615 0.23 +0.3
99,241 - EX31_RS06615 0.23 -0.9
99,241 - EX31_RS06615 0.23 -0.6
99,241 - EX31_RS06615 0.23 -0.3
99,241 - EX31_RS06615 0.23 +2.1
99,241 - EX31_RS06615 0.23 +0.4
99,241 - EX31_RS06615 0.23 +0.7
99,241 - EX31_RS06615 0.23 -0.2
99,241 - EX31_RS06615 0.23 -0.4
99,241 - EX31_RS06615 0.23 -1.6
99,241 - EX31_RS06615 0.23 -0.1
99,241 - EX31_RS06615 0.23 -2.7
99,262 - EX31_RS06615 0.27 -1.0
99,262 - EX31_RS06615 0.27 -2.0
99,262 - EX31_RS06615 0.27 -0.9
99,309 - EX31_RS06615 0.35 -1.8
99,309 - EX31_RS06615 0.35 -0.7
99,309 - EX31_RS06615 0.35 -1.0
99,309 - EX31_RS06615 0.35 -2.0
99,309 - EX31_RS06615 0.35 -0.7
99,309 - EX31_RS06615 0.35 -0.2
99,346 + EX31_RS06615 0.42 +1.4
99,347 - EX31_RS06615 0.42 +0.1
99,462 - EX31_RS06615 0.62 +0.3
99,462 - EX31_RS06615 0.62 -0.0
99,462 - EX31_RS06615 0.62 -1.5
99,462 - EX31_RS06615 0.62 -1.3
99,497 - EX31_RS06615 0.69 -0.3
99,497 - EX31_RS06615 0.69 +0.4
99,675 + -1.4
99,676 - -0.9
99,704 - -2.2
99,711 - -0.5
99,850 - EX31_RS06620 0.30 -2.7
100,025 - EX31_RS06620 0.60 -0.2
100,034 - EX31_RS06620 0.62 -1.4
100,034 - EX31_RS06620 0.62 -1.4
100,097 - EX31_RS06620 0.73 -0.3
100,097 - EX31_RS06620 0.73 -2.2

Or see this region's nucleotide sequence