Strain Fitness in Rahnella sp. WP5 around EX31_RS01990

Experiment: L-Serine (N); RCH2 media; shaking

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS01980 and EX31_RS01985 are separated by 19 nucleotidesEX31_RS01985 and EX31_RS01990 overlap by 8 nucleotidesEX31_RS01990 and EX31_RS01995 are separated by 11 nucleotides EX31_RS01980: EX31_RS01980 - type VI secretion system baseplate subunit TssG, at 434,263 to 435,360 _RS01980 EX31_RS01985: EX31_RS01985 - type VI secretion system lipoprotein TssJ, at 435,380 to 435,877 _RS01985 EX31_RS01990: EX31_RS01990 - type VI secretion system baseplate subunit TssE, at 435,870 to 436,307 _RS01990 EX31_RS01995: EX31_RS01995 - type VI secretion protein ImpA, at 436,319 to 437,704 _RS01995 Position (kb) 435 436 437Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 434.888 kb on + strand, within EX31_RS01980at 434.888 kb on + strand, within EX31_RS01980at 434.910 kb on + strand, within EX31_RS01980at 434.911 kb on - strand, within EX31_RS01980at 435.106 kb on + strand, within EX31_RS01980at 435.106 kb on + strand, within EX31_RS01980at 435.106 kb on + strand, within EX31_RS01980at 435.106 kb on + strand, within EX31_RS01980at 435.106 kb on + strand, within EX31_RS01980at 435.106 kb on + strand, within EX31_RS01980at 435.107 kb on - strand, within EX31_RS01980at 435.107 kb on - strand, within EX31_RS01980at 435.134 kb on + strand, within EX31_RS01980at 435.243 kb on + strand, within EX31_RS01980at 435.243 kb on + strand, within EX31_RS01980at 435.244 kb on - strand, within EX31_RS01980at 435.244 kb on - strand, within EX31_RS01980at 435.244 kb on - strand, within EX31_RS01980at 435.244 kb on - strand, within EX31_RS01980at 435.261 kb on + strandat 435.279 kb on + strandat 435.280 kb on - strandat 435.282 kb on + strandat 435.283 kb on - strandat 435.340 kb on + strandat 435.370 kb on + strandat 435.375 kb on + strandat 435.376 kb on - strandat 435.559 kb on + strand, within EX31_RS01985at 435.559 kb on + strand, within EX31_RS01985at 435.559 kb on + strand, within EX31_RS01985at 435.559 kb on + strand, within EX31_RS01985at 435.560 kb on - strand, within EX31_RS01985at 435.563 kb on + strand, within EX31_RS01985at 435.564 kb on - strand, within EX31_RS01985at 435.616 kb on + strand, within EX31_RS01985at 435.763 kb on + strand, within EX31_RS01985at 435.772 kb on + strand, within EX31_RS01985at 435.772 kb on + strand, within EX31_RS01985at 435.773 kb on - strand, within EX31_RS01985at 435.871 kb on + strandat 435.871 kb on + strandat 435.879 kb on - strandat 436.157 kb on + strand, within EX31_RS01990at 436.229 kb on - strand, within EX31_RS01990at 436.280 kb on + strandat 436.281 kb on - strandat 436.281 kb on - strandat 436.296 kb on + strandat 436.324 kb on + strandat 436.325 kb on - strandat 436.505 kb on + strand, within EX31_RS01995at 436.505 kb on + strand, within EX31_RS01995at 436.665 kb on + strand, within EX31_RS01995at 436.795 kb on + strand, within EX31_RS01995at 436.796 kb on - strand, within EX31_RS01995at 436.810 kb on + strand, within EX31_RS01995at 436.810 kb on + strand, within EX31_RS01995at 436.832 kb on - strand, within EX31_RS01995at 436.832 kb on - strand, within EX31_RS01995at 436.928 kb on + strand, within EX31_RS01995at 436.928 kb on + strand, within EX31_RS01995at 436.928 kb on + strand, within EX31_RS01995at 436.928 kb on + strand, within EX31_RS01995at 436.928 kb on + strand, within EX31_RS01995at 436.928 kb on + strand, within EX31_RS01995at 436.928 kb on + strand, within EX31_RS01995at 436.928 kb on + strand, within EX31_RS01995at 436.929 kb on - strand, within EX31_RS01995at 436.929 kb on - strand, within EX31_RS01995at 437.075 kb on + strand, within EX31_RS01995at 437.158 kb on + strand, within EX31_RS01995at 437.158 kb on + strand, within EX31_RS01995at 437.158 kb on + strand, within EX31_RS01995at 437.159 kb on - strand, within EX31_RS01995at 437.159 kb on - strand, within EX31_RS01995at 437.159 kb on - strand, within EX31_RS01995at 437.284 kb on - strand, within EX31_RS01995at 437.284 kb on - strand, within EX31_RS01995

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (N); RCH2 media; shaking
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434,888 + EX31_RS01980 0.57 +1.1
434,888 + EX31_RS01980 0.57 +0.9
434,910 + EX31_RS01980 0.59 +2.5
434,911 - EX31_RS01980 0.59 -2.2
435,106 + EX31_RS01980 0.77 -0.7
435,106 + EX31_RS01980 0.77 -0.1
435,106 + EX31_RS01980 0.77 -0.1
435,106 + EX31_RS01980 0.77 -0.1
435,106 + EX31_RS01980 0.77 -0.1
435,106 + EX31_RS01980 0.77 +0.2
435,107 - EX31_RS01980 0.77 -0.4
435,107 - EX31_RS01980 0.77 +0.2
435,134 + EX31_RS01980 0.79 +1.1
435,243 + EX31_RS01980 0.89 +0.2
435,243 + EX31_RS01980 0.89 +0.1
435,244 - EX31_RS01980 0.89 +0.3
435,244 - EX31_RS01980 0.89 +0.6
435,244 - EX31_RS01980 0.89 +0.5
435,244 - EX31_RS01980 0.89 -0.6
435,261 + +0.5
435,279 + +1.2
435,280 - +1.2
435,282 + +0.8
435,283 - +0.6
435,340 + -0.3
435,370 + +1.9
435,375 + -2.1
435,376 - +0.8
435,559 + EX31_RS01985 0.36 -1.1
435,559 + EX31_RS01985 0.36 -0.1
435,559 + EX31_RS01985 0.36 +0.6
435,559 + EX31_RS01985 0.36 +1.4
435,560 - EX31_RS01985 0.36 +1.3
435,563 + EX31_RS01985 0.37 +4.1
435,564 - EX31_RS01985 0.37 +1.4
435,616 + EX31_RS01985 0.47 +1.9
435,763 + EX31_RS01985 0.77 +0.5
435,772 + EX31_RS01985 0.79 -0.3
435,772 + EX31_RS01985 0.79 +0.3
435,773 - EX31_RS01985 0.79 -0.8
435,871 + +1.3
435,871 + -1.1
435,879 - +1.1
436,157 + EX31_RS01990 0.66 -1.7
436,229 - EX31_RS01990 0.82 -1.3
436,280 + +0.3
436,281 - -1.2
436,281 - -0.4
436,296 + -0.0
436,324 + +0.7
436,325 - -0.9
436,505 + EX31_RS01995 0.13 +0.2
436,505 + EX31_RS01995 0.13 -1.8
436,665 + EX31_RS01995 0.25 -1.1
436,795 + EX31_RS01995 0.34 -1.4
436,796 - EX31_RS01995 0.34 +0.4
436,810 + EX31_RS01995 0.35 +0.8
436,810 + EX31_RS01995 0.35 -0.6
436,832 - EX31_RS01995 0.37 -0.4
436,832 - EX31_RS01995 0.37 +0.6
436,928 + EX31_RS01995 0.44 +0.9
436,928 + EX31_RS01995 0.44 +0.7
436,928 + EX31_RS01995 0.44 -1.3
436,928 + EX31_RS01995 0.44 +0.8
436,928 + EX31_RS01995 0.44 +1.0
436,928 + EX31_RS01995 0.44 +0.4
436,928 + EX31_RS01995 0.44 +0.8
436,928 + EX31_RS01995 0.44 -0.7
436,929 - EX31_RS01995 0.44 -1.0
436,929 - EX31_RS01995 0.44 +0.3
437,075 + EX31_RS01995 0.55 -0.6
437,158 + EX31_RS01995 0.61 +1.2
437,158 + EX31_RS01995 0.61 -0.0
437,158 + EX31_RS01995 0.61 -1.2
437,159 - EX31_RS01995 0.61 +0.9
437,159 - EX31_RS01995 0.61 +0.0
437,159 - EX31_RS01995 0.61 -0.1
437,284 - EX31_RS01995 0.70 -0.1
437,284 - EX31_RS01995 0.70 +0.3

Or see this region's nucleotide sequence