Strain Fitness in Rahnella sp. WP5 around EX31_RS01750

Experiment: L-Serine (N); RCH2 media; shaking

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS01740 and EX31_RS01745 are separated by 108 nucleotidesEX31_RS01745 and EX31_RS01750 are separated by 103 nucleotidesEX31_RS01750 and EX31_RS01755 are separated by 3 nucleotidesEX31_RS01755 and EX31_RS01760 overlap by 1 nucleotides EX31_RS01740: EX31_RS01740 - helix-turn-helix domain-containing protein, at 378,017 to 378,256 _RS01740 EX31_RS01745: EX31_RS01745 - helix-turn-helix transcriptional regulator, at 378,365 to 379,084 _RS01745 EX31_RS01750: EX31_RS01750 - hexulose-6-phosphate synthase, at 379,188 to 379,430 _RS01750 EX31_RS01755: EX31_RS01755 - type II toxin-antitoxin system HicB family antitoxin, at 379,434 to 379,892 _RS01755 EX31_RS01760: EX31_RS01760 - hypothetical protein, at 379,892 to 380,287 _RS01760 Position (kb) 379 380Strain fitness (log2 ratio) -2 -1 0 1 2 3at 378.341 kb on + strandat 378.341 kb on + strandat 378.351 kb on + strandat 378.351 kb on + strandat 378.353 kb on + strandat 379.085 kb on + strandat 379.112 kb on + strandat 379.112 kb on + strandat 379.112 kb on + strandat 379.112 kb on + strandat 379.112 kb on + strandat 379.113 kb on - strandat 379.131 kb on + strandat 379.131 kb on + strandat 379.131 kb on + strandat 379.131 kb on + strandat 379.132 kb on - strandat 379.168 kb on + strandat 379.168 kb on + strandat 379.168 kb on + strandat 379.168 kb on + strandat 379.172 kb on + strandat 379.180 kb on + strandat 379.180 kb on + strandat 379.180 kb on + strandat 379.180 kb on + strandat 379.180 kb on + strandat 379.229 kb on - strand, within EX31_RS01750at 379.232 kb on + strand, within EX31_RS01750at 379.258 kb on + strand, within EX31_RS01750at 379.275 kb on + strand, within EX31_RS01750at 379.275 kb on + strand, within EX31_RS01750at 379.275 kb on + strand, within EX31_RS01750at 379.323 kb on + strand, within EX31_RS01750at 379.325 kb on + strand, within EX31_RS01750at 379.340 kb on + strand, within EX31_RS01750at 379.340 kb on + strand, within EX31_RS01750at 379.389 kb on + strand, within EX31_RS01750at 379.389 kb on + strand, within EX31_RS01750at 379.389 kb on + strand, within EX31_RS01750at 379.396 kb on + strand, within EX31_RS01750at 379.396 kb on + strand, within EX31_RS01750at 379.649 kb on + strand, within EX31_RS01755at 379.655 kb on + strand, within EX31_RS01755at 379.692 kb on + strand, within EX31_RS01755at 379.715 kb on + strand, within EX31_RS01755at 379.715 kb on + strand, within EX31_RS01755at 379.715 kb on + strand, within EX31_RS01755at 379.754 kb on + strand, within EX31_RS01755at 379.787 kb on + strand, within EX31_RS01755at 379.789 kb on + strand, within EX31_RS01755at 379.972 kb on + strand, within EX31_RS01760at 379.972 kb on + strand, within EX31_RS01760at 379.972 kb on + strand, within EX31_RS01760at 380.049 kb on + strand, within EX31_RS01760at 380.094 kb on + strand, within EX31_RS01760at 380.104 kb on + strand, within EX31_RS01760at 380.115 kb on + strand, within EX31_RS01760at 380.201 kb on + strand, within EX31_RS01760at 380.205 kb on + strand, within EX31_RS01760at 380.205 kb on + strand, within EX31_RS01760at 380.205 kb on + strand, within EX31_RS01760at 380.205 kb on + strand, within EX31_RS01760at 380.205 kb on + strand, within EX31_RS01760at 380.205 kb on + strand, within EX31_RS01760at 380.205 kb on + strand, within EX31_RS01760at 380.205 kb on + strand, within EX31_RS01760at 380.205 kb on + strand, within EX31_RS01760at 380.205 kb on + strand, within EX31_RS01760at 380.245 kb on + strand, within EX31_RS01760at 380.245 kb on + strand, within EX31_RS01760at 380.326 kb on + strandat 380.326 kb on + strandat 380.326 kb on + strandat 380.326 kb on + strandat 380.327 kb on - strandat 380.327 kb on - strandat 380.327 kb on - strandat 380.341 kb on + strandat 380.379 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (N); RCH2 media; shaking
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378,341 + -1.3
378,341 + +0.6
378,351 + +0.6
378,351 + -0.3
378,353 + +0.5
379,085 + -0.4
379,112 + -0.4
379,112 + +0.2
379,112 + +0.7
379,112 + +1.1
379,112 + -1.6
379,113 - +0.3
379,131 + +3.5
379,131 + -0.2
379,131 + -0.9
379,131 + +0.3
379,132 - -0.2
379,168 + -0.0
379,168 + -0.0
379,168 + +1.5
379,168 + -2.3
379,172 + -0.1
379,180 + +1.2
379,180 + -1.2
379,180 + -1.0
379,180 + -0.1
379,180 + -0.4
379,229 - EX31_RS01750 0.17 +2.2
379,232 + EX31_RS01750 0.18 +1.7
379,258 + EX31_RS01750 0.29 -0.5
379,275 + EX31_RS01750 0.36 +1.5
379,275 + EX31_RS01750 0.36 +0.9
379,275 + EX31_RS01750 0.36 +0.3
379,323 + EX31_RS01750 0.56 +2.0
379,325 + EX31_RS01750 0.56 +1.1
379,340 + EX31_RS01750 0.63 +0.3
379,340 + EX31_RS01750 0.63 +0.2
379,389 + EX31_RS01750 0.83 +0.9
379,389 + EX31_RS01750 0.83 +1.4
379,389 + EX31_RS01750 0.83 -0.1
379,396 + EX31_RS01750 0.86 +1.1
379,396 + EX31_RS01750 0.86 +0.5
379,649 + EX31_RS01755 0.47 +1.6
379,655 + EX31_RS01755 0.48 -0.3
379,692 + EX31_RS01755 0.56 +0.5
379,715 + EX31_RS01755 0.61 +0.0
379,715 + EX31_RS01755 0.61 +0.0
379,715 + EX31_RS01755 0.61 +0.1
379,754 + EX31_RS01755 0.70 -0.7
379,787 + EX31_RS01755 0.77 -1.4
379,789 + EX31_RS01755 0.77 -0.1
379,972 + EX31_RS01760 0.20 +0.2
379,972 + EX31_RS01760 0.20 +1.1
379,972 + EX31_RS01760 0.20 +0.3
380,049 + EX31_RS01760 0.40 +0.5
380,094 + EX31_RS01760 0.51 +0.9
380,104 + EX31_RS01760 0.54 +0.7
380,115 + EX31_RS01760 0.56 +0.1
380,201 + EX31_RS01760 0.78 +0.2
380,205 + EX31_RS01760 0.79 -0.3
380,205 + EX31_RS01760 0.79 +1.1
380,205 + EX31_RS01760 0.79 +2.1
380,205 + EX31_RS01760 0.79 -0.1
380,205 + EX31_RS01760 0.79 +0.1
380,205 + EX31_RS01760 0.79 +1.9
380,205 + EX31_RS01760 0.79 +0.2
380,205 + EX31_RS01760 0.79 +0.0
380,205 + EX31_RS01760 0.79 +0.3
380,205 + EX31_RS01760 0.79 +0.6
380,245 + EX31_RS01760 0.89 +0.0
380,245 + EX31_RS01760 0.89 +1.0
380,326 + +0.7
380,326 + +0.7
380,326 + +0.8
380,326 + -0.9
380,327 - -2.3
380,327 - -1.4
380,327 - +1.1
380,341 + -1.6
380,379 - +0.8

Or see this region's nucleotide sequence