Experiment: nitrate 100 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS19415 and AZOBR_RS19420 are separated by 3 nucleotides AZOBR_RS19420 and AZOBR_RS19425 are separated by 18 nucleotides AZOBR_RS19425 and AZOBR_RS19430 are separated by 209 nucleotides AZOBR_RS19430 and AZOBR_RS19435 are separated by 12 nucleotides AZOBR_RS19435 and AZOBR_RS19440 are separated by 15 nucleotides
AZOBR_RS19415: AZOBR_RS19415 - glycosyltransferase, at 1,132,297 to 1,132,596
_RS19415
AZOBR_RS19420: AZOBR_RS19420 - hypothetical protein, at 1,132,600 to 1,132,854
_RS19420
AZOBR_RS19425: AZOBR_RS19425 - phosphoglyceromutase, at 1,132,873 to 1,133,634
_RS19425
AZOBR_RS19430: AZOBR_RS19430 - hypothetical protein, at 1,133,844 to 1,134,140
_RS19430
AZOBR_RS19435: AZOBR_RS19435 - hypothetical protein, at 1,134,153 to 1,134,494
_RS19435
AZOBR_RS19440: AZOBR_RS19440 - hypothetical protein, at 1,134,510 to 1,134,707
_RS19440
Position (kb) 1132
1133
1134 Strain fitness (log2 ratio) -1
0
1
2 at 1131.938 kb on - strand at 1131.938 kb on - strand at 1132.872 kb on - strand at 1132.874 kb on + strand at 1132.875 kb on - strand at 1132.875 kb on - strand at 1132.958 kb on + strand, within AZOBR_RS19425 at 1132.994 kb on + strand, within AZOBR_RS19425 at 1132.995 kb on - strand, within AZOBR_RS19425 at 1132.995 kb on - strand, within AZOBR_RS19425 at 1133.367 kb on - strand, within AZOBR_RS19425 at 1133.728 kb on + strand at 1133.728 kb on + strand at 1133.729 kb on - strand at 1133.941 kb on - strand, within AZOBR_RS19430 at 1134.351 kb on - strand, within AZOBR_RS19435
Per-strain Table
Position Strand Gene LocusTag Fraction nitrate 100 mM remove 1,131,938 - +0.1 1,131,938 - +0.2 1,132,872 - -0.6 1,132,874 + +0.2 1,132,875 - -0.2 1,132,875 - +0.5 1,132,958 + AZOBR_RS19425 0.11 +0.1 1,132,994 + AZOBR_RS19425 0.16 +2.5 1,132,995 - AZOBR_RS19425 0.16 +0.1 1,132,995 - AZOBR_RS19425 0.16 +0.1 1,133,367 - AZOBR_RS19425 0.65 -0.3 1,133,728 + -0.5 1,133,728 + -0.6 1,133,729 - -0.0 1,133,941 - AZOBR_RS19430 0.33 +0.5 1,134,351 - AZOBR_RS19435 0.58 -1.5
Or see this region's nucleotide sequence