Experiment: nitrate 100 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS15895 and AZOBR_RS15900 are separated by 172 nucleotides AZOBR_RS15900 and AZOBR_RS15905 are separated by 156 nucleotides AZOBR_RS15905 and AZOBR_RS15910 are separated by 32 nucleotides
AZOBR_RS15895: AZOBR_RS15895 - hypothetical protein, at 320,854 to 321,075
_RS15895
AZOBR_RS15900: AZOBR_RS15900 - hypothetical protein, at 321,248 to 321,706
_RS15900
AZOBR_RS15905: AZOBR_RS15905 - 2-hydroxyhepta-2 4-diene-1 7-dioate isomerase, at 321,863 to 322,714
_RS15905
AZOBR_RS15910: AZOBR_RS15910 - hypothetical protein, at 322,747 to 324,030
_RS15910
Position (kb) 321
322
323 Strain fitness (log2 ratio) -1
0
1 at 320.935 kb on + strand, within AZOBR_RS15895 at 320.935 kb on + strand, within AZOBR_RS15895 at 320.935 kb on + strand, within AZOBR_RS15895 at 320.936 kb on - strand, within AZOBR_RS15895 at 321.082 kb on - strand at 321.082 kb on - strand at 321.171 kb on + strand at 321.504 kb on + strand, within AZOBR_RS15900 at 321.504 kb on + strand, within AZOBR_RS15900 at 321.505 kb on - strand, within AZOBR_RS15900 at 321.687 kb on + strand at 321.707 kb on - strand at 321.748 kb on + strand at 321.748 kb on + strand at 321.749 kb on - strand at 321.857 kb on - strand at 322.101 kb on - strand, within AZOBR_RS15905 at 322.538 kb on + strand, within AZOBR_RS15905 at 322.538 kb on + strand, within AZOBR_RS15905 at 322.539 kb on - strand, within AZOBR_RS15905 at 322.936 kb on + strand, within AZOBR_RS15910 at 322.936 kb on + strand, within AZOBR_RS15910 at 323.000 kb on - strand, within AZOBR_RS15910 at 323.215 kb on + strand, within AZOBR_RS15910 at 323.215 kb on + strand, within AZOBR_RS15910 at 323.692 kb on + strand, within AZOBR_RS15910
Per-strain Table
Position Strand Gene LocusTag Fraction nitrate 100 mM remove 320,935 + AZOBR_RS15895 0.36 +0.1 320,935 + AZOBR_RS15895 0.36 -0.7 320,935 + AZOBR_RS15895 0.36 -0.0 320,936 - AZOBR_RS15895 0.37 -0.2 321,082 - +0.1 321,082 - +1.0 321,171 + +0.3 321,504 + AZOBR_RS15900 0.56 -0.5 321,504 + AZOBR_RS15900 0.56 -0.3 321,505 - AZOBR_RS15900 0.56 -0.1 321,687 + +1.3 321,707 - -0.2 321,748 + -0.2 321,748 + +0.3 321,749 - +1.0 321,857 - -0.2 322,101 - AZOBR_RS15905 0.28 -0.3 322,538 + AZOBR_RS15905 0.79 -0.2 322,538 + AZOBR_RS15905 0.79 -0.5 322,539 - AZOBR_RS15905 0.79 -1.4 322,936 + AZOBR_RS15910 0.15 -0.0 322,936 + AZOBR_RS15910 0.15 -0.9 323,000 - AZOBR_RS15910 0.20 -0.2 323,215 + AZOBR_RS15910 0.36 -0.3 323,215 + AZOBR_RS15910 0.36 -0.4 323,692 + AZOBR_RS15910 0.74 +0.1
Or see this region's nucleotide sequence