Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS01400

Experiment: nitrate 100 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS01390 and AZOBR_RS01400 are separated by 944 nucleotidesAZOBR_RS01400 and AZOBR_RS01405 are separated by 129 nucleotides AZOBR_RS01390: AZOBR_RS01390 - 30S ribosomal protein S15, at 289,099 to 289,368 _RS01390 AZOBR_RS01400: AZOBR_RS01400 - ribosome-binding factor A, at 290,313 to 290,897 _RS01400 AZOBR_RS01405: AZOBR_RS01405 - translation initiation factor IF-2, at 291,027 to 293,762 _RS01405 Position (kb) 290 291Strain fitness (log2 ratio) -2 -1 0 1at 289.787 kb on + strandat 289.787 kb on + strandat 289.788 kb on - strandat 289.917 kb on - strandat 290.100 kb on + strandat 290.101 kb on - strandat 290.124 kb on + strandat 290.125 kb on - strandat 290.125 kb on - strandat 290.315 kb on - strandat 290.564 kb on - strand, within AZOBR_RS01400at 290.564 kb on - strand, within AZOBR_RS01400at 290.979 kb on + strandat 290.979 kb on + strandat 290.979 kb on + strandat 290.980 kb on - strandat 290.980 kb on - strandat 290.982 kb on - strandat 291.029 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrate 100 mM
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289,787 + +0.1
289,787 + +0.0
289,788 - -0.4
289,917 - -0.2
290,100 + -1.0
290,101 - -1.4
290,124 + -0.7
290,125 - -0.2
290,125 - +0.8
290,315 - -0.2
290,564 - AZOBR_RS01400 0.43 -2.1
290,564 - AZOBR_RS01400 0.43 -0.8
290,979 + -2.7
290,979 + -2.2
290,979 + -2.4
290,980 - +0.4
290,980 - -0.0
290,982 - -0.4
291,029 - -0.6

Or see this region's nucleotide sequence