Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_16440

Experiment: D-Fructose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_16435 and AO353_16440 are separated by 33 nucleotidesAO353_16440 and AO353_16445 are separated by 224 nucleotides AO353_16435: AO353_16435 - 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase, at 3,648,967 to 3,650,001 _16435 AO353_16440: AO353_16440 - ArsC family transcriptional regulator, at 3,650,035 to 3,650,397 _16440 AO353_16445: AO353_16445 - succinyldiaminopimelate transaminase, at 3,650,622 to 3,651,821 _16445 Position (kb) 3650 3651Strain fitness (log2 ratio) -1 0 1 2at 3650.014 kb on - strandat 3650.036 kb on + strandat 3650.037 kb on - strandat 3650.037 kb on - strandat 3650.037 kb on - strandat 3650.037 kb on - strandat 3650.055 kb on - strandat 3650.055 kb on - strandat 3650.145 kb on + strand, within AO353_16440at 3650.172 kb on + strand, within AO353_16440at 3650.173 kb on - strand, within AO353_16440at 3650.173 kb on - strand, within AO353_16440at 3650.173 kb on - strand, within AO353_16440at 3650.173 kb on - strand, within AO353_16440at 3650.173 kb on - strand, within AO353_16440at 3650.443 kb on + strandat 3650.443 kb on + strandat 3650.443 kb on + strandat 3650.443 kb on + strandat 3650.444 kb on - strandat 3650.444 kb on - strandat 3650.444 kb on - strandat 3650.444 kb on - strandat 3650.444 kb on - strandat 3650.444 kb on - strandat 3650.523 kb on + strandat 3650.523 kb on + strandat 3650.523 kb on + strandat 3650.524 kb on - strandat 3650.616 kb on + strandat 3650.616 kb on + strandat 3650.616 kb on + strandat 3650.616 kb on + strandat 3650.617 kb on - strandat 3650.617 kb on - strandat 3650.617 kb on - strandat 3650.617 kb on - strandat 3650.617 kb on - strandat 3650.617 kb on - strandat 3650.623 kb on + strandat 3650.623 kb on + strandat 3650.749 kb on + strand, within AO353_16445at 3650.749 kb on + strand, within AO353_16445at 3650.750 kb on - strand, within AO353_16445at 3650.750 kb on - strand, within AO353_16445at 3650.750 kb on - strand, within AO353_16445at 3650.836 kb on + strand, within AO353_16445at 3650.836 kb on + strand, within AO353_16445at 3650.837 kb on - strand, within AO353_16445at 3650.837 kb on - strand, within AO353_16445at 3650.859 kb on + strand, within AO353_16445at 3650.859 kb on + strand, within AO353_16445at 3650.859 kb on + strand, within AO353_16445at 3650.859 kb on + strand, within AO353_16445at 3650.859 kb on + strand, within AO353_16445at 3650.859 kb on + strand, within AO353_16445at 3650.859 kb on + strand, within AO353_16445at 3650.859 kb on + strand, within AO353_16445at 3650.860 kb on - strand, within AO353_16445at 3650.860 kb on - strand, within AO353_16445at 3650.860 kb on - strand, within AO353_16445at 3650.899 kb on + strand, within AO353_16445at 3650.899 kb on + strand, within AO353_16445at 3650.899 kb on + strand, within AO353_16445at 3650.899 kb on + strand, within AO353_16445at 3650.900 kb on - strand, within AO353_16445at 3650.900 kb on - strand, within AO353_16445at 3650.900 kb on - strand, within AO353_16445at 3651.001 kb on + strand, within AO353_16445at 3651.001 kb on + strand, within AO353_16445at 3651.001 kb on + strand, within AO353_16445at 3651.001 kb on + strand, within AO353_16445at 3651.001 kb on + strand, within AO353_16445at 3651.001 kb on + strand, within AO353_16445at 3651.001 kb on + strand, within AO353_16445at 3651.001 kb on + strand, within AO353_16445at 3651.002 kb on - strand, within AO353_16445at 3651.002 kb on - strand, within AO353_16445at 3651.002 kb on - strand, within AO353_16445at 3651.002 kb on - strand, within AO353_16445at 3651.002 kb on - strand, within AO353_16445at 3651.010 kb on + strand, within AO353_16445at 3651.011 kb on - strand, within AO353_16445at 3651.184 kb on + strand, within AO353_16445at 3651.184 kb on + strand, within AO353_16445at 3651.184 kb on + strand, within AO353_16445at 3651.184 kb on + strand, within AO353_16445at 3651.184 kb on + strand, within AO353_16445at 3651.185 kb on - strand, within AO353_16445at 3651.196 kb on + strand, within AO353_16445at 3651.196 kb on + strand, within AO353_16445at 3651.197 kb on - strand, within AO353_16445at 3651.332 kb on + strand, within AO353_16445at 3651.391 kb on + strand, within AO353_16445at 3651.391 kb on + strand, within AO353_16445at 3651.391 kb on + strand, within AO353_16445at 3651.391 kb on + strand, within AO353_16445at 3651.391 kb on + strand, within AO353_16445at 3651.391 kb on + strand, within AO353_16445at 3651.391 kb on + strand, within AO353_16445at 3651.391 kb on + strand, within AO353_16445at 3651.392 kb on - strand, within AO353_16445at 3651.392 kb on - strand, within AO353_16445at 3651.392 kb on - strand, within AO353_16445at 3651.392 kb on - strand, within AO353_16445at 3651.392 kb on - strand, within AO353_16445

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Fructose (C)
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3,650,014 - -0.6
3,650,036 + +0.4
3,650,037 - -0.9
3,650,037 - -0.6
3,650,037 - -0.3
3,650,037 - -0.6
3,650,055 - -1.4
3,650,055 - -1.3
3,650,145 + AO353_16440 0.30 +0.1
3,650,172 + AO353_16440 0.38 +0.4
3,650,173 - AO353_16440 0.38 -0.6
3,650,173 - AO353_16440 0.38 -0.7
3,650,173 - AO353_16440 0.38 -0.8
3,650,173 - AO353_16440 0.38 -1.3
3,650,173 - AO353_16440 0.38 -0.2
3,650,443 + +0.4
3,650,443 + -0.4
3,650,443 + -0.2
3,650,443 + -0.2
3,650,444 - -0.9
3,650,444 - +0.4
3,650,444 - -1.2
3,650,444 - +0.4
3,650,444 - -1.1
3,650,444 - -0.9
3,650,523 + +0.1
3,650,523 + +0.7
3,650,523 + -0.1
3,650,524 - -0.7
3,650,616 + +0.3
3,650,616 + -0.2
3,650,616 + +0.8
3,650,616 + -1.7
3,650,617 - -1.0
3,650,617 - +1.0
3,650,617 - -1.4
3,650,617 - -0.9
3,650,617 - -1.4
3,650,617 - -0.2
3,650,623 + +0.4
3,650,623 + +0.0
3,650,749 + AO353_16445 0.11 +0.5
3,650,749 + AO353_16445 0.11 -1.5
3,650,750 - AO353_16445 0.11 -0.9
3,650,750 - AO353_16445 0.11 -0.5
3,650,750 - AO353_16445 0.11 -0.3
3,650,836 + AO353_16445 0.18 +0.2
3,650,836 + AO353_16445 0.18 +0.6
3,650,837 - AO353_16445 0.18 +0.0
3,650,837 - AO353_16445 0.18 +0.5
3,650,859 + AO353_16445 0.20 +0.1
3,650,859 + AO353_16445 0.20 -0.1
3,650,859 + AO353_16445 0.20 +1.0
3,650,859 + AO353_16445 0.20 -0.1
3,650,859 + AO353_16445 0.20 +0.8
3,650,859 + AO353_16445 0.20 -0.5
3,650,859 + AO353_16445 0.20 -0.3
3,650,859 + AO353_16445 0.20 +0.4
3,650,860 - AO353_16445 0.20 -0.9
3,650,860 - AO353_16445 0.20 -0.5
3,650,860 - AO353_16445 0.20 +0.9
3,650,899 + AO353_16445 0.23 -0.3
3,650,899 + AO353_16445 0.23 -0.9
3,650,899 + AO353_16445 0.23 +0.5
3,650,899 + AO353_16445 0.23 +0.8
3,650,900 - AO353_16445 0.23 -0.2
3,650,900 - AO353_16445 0.23 -0.9
3,650,900 - AO353_16445 0.23 -0.4
3,651,001 + AO353_16445 0.32 -0.2
3,651,001 + AO353_16445 0.32 -0.4
3,651,001 + AO353_16445 0.32 +0.1
3,651,001 + AO353_16445 0.32 -0.5
3,651,001 + AO353_16445 0.32 +1.6
3,651,001 + AO353_16445 0.32 -0.5
3,651,001 + AO353_16445 0.32 +0.7
3,651,001 + AO353_16445 0.32 +0.7
3,651,002 - AO353_16445 0.32 -1.1
3,651,002 - AO353_16445 0.32 -0.2
3,651,002 - AO353_16445 0.32 -0.0
3,651,002 - AO353_16445 0.32 -0.3
3,651,002 - AO353_16445 0.32 +0.2
3,651,010 + AO353_16445 0.32 +0.6
3,651,011 - AO353_16445 0.32 -0.8
3,651,184 + AO353_16445 0.47 +0.6
3,651,184 + AO353_16445 0.47 +1.8
3,651,184 + AO353_16445 0.47 +0.1
3,651,184 + AO353_16445 0.47 +1.8
3,651,184 + AO353_16445 0.47 +0.5
3,651,185 - AO353_16445 0.47 +0.8
3,651,196 + AO353_16445 0.48 +0.1
3,651,196 + AO353_16445 0.48 +1.0
3,651,197 - AO353_16445 0.48 +0.7
3,651,332 + AO353_16445 0.59 +2.5
3,651,391 + AO353_16445 0.64 +0.7
3,651,391 + AO353_16445 0.64 -0.2
3,651,391 + AO353_16445 0.64 +0.8
3,651,391 + AO353_16445 0.64 -0.2
3,651,391 + AO353_16445 0.64 -0.5
3,651,391 + AO353_16445 0.64 -0.1
3,651,391 + AO353_16445 0.64 -0.1
3,651,391 + AO353_16445 0.64 +0.8
3,651,392 - AO353_16445 0.64 +0.5
3,651,392 - AO353_16445 0.64 +0.1
3,651,392 - AO353_16445 0.64 +0.0
3,651,392 - AO353_16445 0.64 +0.1
3,651,392 - AO353_16445 0.64 +0.4

Or see this region's nucleotide sequence