Experiment: D-Fructose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_16435 and AO353_16440 are separated by 33 nucleotides AO353_16440 and AO353_16445 are separated by 224 nucleotides
AO353_16435: AO353_16435 - 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase, at 3,648,967 to 3,650,001
_16435
AO353_16440: AO353_16440 - ArsC family transcriptional regulator, at 3,650,035 to 3,650,397
_16440
AO353_16445: AO353_16445 - succinyldiaminopimelate transaminase, at 3,650,622 to 3,651,821
_16445
Position (kb)
3650
3651 Strain fitness (log2 ratio)
-1
0
1
2 at 3650.014 kb on - strand at 3650.036 kb on + strand at 3650.037 kb on - strand at 3650.037 kb on - strand at 3650.037 kb on - strand at 3650.037 kb on - strand at 3650.055 kb on - strand at 3650.055 kb on - strand at 3650.145 kb on + strand, within AO353_16440 at 3650.172 kb on + strand, within AO353_16440 at 3650.173 kb on - strand, within AO353_16440 at 3650.173 kb on - strand, within AO353_16440 at 3650.173 kb on - strand, within AO353_16440 at 3650.173 kb on - strand, within AO353_16440 at 3650.173 kb on - strand, within AO353_16440 at 3650.443 kb on + strand at 3650.443 kb on + strand at 3650.443 kb on + strand at 3650.443 kb on + strand at 3650.444 kb on - strand at 3650.444 kb on - strand at 3650.444 kb on - strand at 3650.444 kb on - strand at 3650.444 kb on - strand at 3650.444 kb on - strand at 3650.523 kb on + strand at 3650.523 kb on + strand at 3650.523 kb on + strand at 3650.524 kb on - strand at 3650.616 kb on + strand at 3650.616 kb on + strand at 3650.616 kb on + strand at 3650.616 kb on + strand at 3650.617 kb on - strand at 3650.617 kb on - strand at 3650.617 kb on - strand at 3650.617 kb on - strand at 3650.617 kb on - strand at 3650.617 kb on - strand at 3650.623 kb on + strand at 3650.623 kb on + strand at 3650.749 kb on + strand, within AO353_16445 at 3650.749 kb on + strand, within AO353_16445 at 3650.750 kb on - strand, within AO353_16445 at 3650.750 kb on - strand, within AO353_16445 at 3650.750 kb on - strand, within AO353_16445 at 3650.836 kb on + strand, within AO353_16445 at 3650.836 kb on + strand, within AO353_16445 at 3650.837 kb on - strand, within AO353_16445 at 3650.837 kb on - strand, within AO353_16445 at 3650.859 kb on + strand, within AO353_16445 at 3650.859 kb on + strand, within AO353_16445 at 3650.859 kb on + strand, within AO353_16445 at 3650.859 kb on + strand, within AO353_16445 at 3650.859 kb on + strand, within AO353_16445 at 3650.859 kb on + strand, within AO353_16445 at 3650.859 kb on + strand, within AO353_16445 at 3650.859 kb on + strand, within AO353_16445 at 3650.860 kb on - strand, within AO353_16445 at 3650.860 kb on - strand, within AO353_16445 at 3650.860 kb on - strand, within AO353_16445 at 3650.899 kb on + strand, within AO353_16445 at 3650.899 kb on + strand, within AO353_16445 at 3650.899 kb on + strand, within AO353_16445 at 3650.899 kb on + strand, within AO353_16445 at 3650.900 kb on - strand, within AO353_16445 at 3650.900 kb on - strand, within AO353_16445 at 3650.900 kb on - strand, within AO353_16445 at 3651.001 kb on + strand, within AO353_16445 at 3651.001 kb on + strand, within AO353_16445 at 3651.001 kb on + strand, within AO353_16445 at 3651.001 kb on + strand, within AO353_16445 at 3651.001 kb on + strand, within AO353_16445 at 3651.001 kb on + strand, within AO353_16445 at 3651.001 kb on + strand, within AO353_16445 at 3651.001 kb on + strand, within AO353_16445 at 3651.002 kb on - strand, within AO353_16445 at 3651.002 kb on - strand, within AO353_16445 at 3651.002 kb on - strand, within AO353_16445 at 3651.002 kb on - strand, within AO353_16445 at 3651.002 kb on - strand, within AO353_16445 at 3651.010 kb on + strand, within AO353_16445 at 3651.011 kb on - strand, within AO353_16445 at 3651.184 kb on + strand, within AO353_16445 at 3651.184 kb on + strand, within AO353_16445 at 3651.184 kb on + strand, within AO353_16445 at 3651.184 kb on + strand, within AO353_16445 at 3651.184 kb on + strand, within AO353_16445 at 3651.185 kb on - strand, within AO353_16445 at 3651.196 kb on + strand, within AO353_16445 at 3651.196 kb on + strand, within AO353_16445 at 3651.197 kb on - strand, within AO353_16445 at 3651.332 kb on + strand, within AO353_16445 at 3651.391 kb on + strand, within AO353_16445 at 3651.391 kb on + strand, within AO353_16445 at 3651.391 kb on + strand, within AO353_16445 at 3651.391 kb on + strand, within AO353_16445 at 3651.391 kb on + strand, within AO353_16445 at 3651.391 kb on + strand, within AO353_16445 at 3651.391 kb on + strand, within AO353_16445 at 3651.391 kb on + strand, within AO353_16445 at 3651.392 kb on - strand, within AO353_16445 at 3651.392 kb on - strand, within AO353_16445 at 3651.392 kb on - strand, within AO353_16445 at 3651.392 kb on - strand, within AO353_16445 at 3651.392 kb on - strand, within AO353_16445
Per-strain Table
Position Strand Gene LocusTag Fraction D-Fructose (C) remove 3,650,014 - -0.6 3,650,036 + +0.4 3,650,037 - -0.9 3,650,037 - -0.6 3,650,037 - -0.3 3,650,037 - -0.6 3,650,055 - -1.4 3,650,055 - -1.3 3,650,145 + AO353_16440 0.30 +0.1 3,650,172 + AO353_16440 0.38 +0.4 3,650,173 - AO353_16440 0.38 -0.6 3,650,173 - AO353_16440 0.38 -0.7 3,650,173 - AO353_16440 0.38 -0.8 3,650,173 - AO353_16440 0.38 -1.3 3,650,173 - AO353_16440 0.38 -0.2 3,650,443 + +0.4 3,650,443 + -0.4 3,650,443 + -0.2 3,650,443 + -0.2 3,650,444 - -0.9 3,650,444 - +0.4 3,650,444 - -1.2 3,650,444 - +0.4 3,650,444 - -1.1 3,650,444 - -0.9 3,650,523 + +0.1 3,650,523 + +0.7 3,650,523 + -0.1 3,650,524 - -0.7 3,650,616 + +0.3 3,650,616 + -0.2 3,650,616 + +0.8 3,650,616 + -1.7 3,650,617 - -1.0 3,650,617 - +1.0 3,650,617 - -1.4 3,650,617 - -0.9 3,650,617 - -1.4 3,650,617 - -0.2 3,650,623 + +0.4 3,650,623 + +0.0 3,650,749 + AO353_16445 0.11 +0.5 3,650,749 + AO353_16445 0.11 -1.5 3,650,750 - AO353_16445 0.11 -0.9 3,650,750 - AO353_16445 0.11 -0.5 3,650,750 - AO353_16445 0.11 -0.3 3,650,836 + AO353_16445 0.18 +0.2 3,650,836 + AO353_16445 0.18 +0.6 3,650,837 - AO353_16445 0.18 +0.0 3,650,837 - AO353_16445 0.18 +0.5 3,650,859 + AO353_16445 0.20 +0.1 3,650,859 + AO353_16445 0.20 -0.1 3,650,859 + AO353_16445 0.20 +1.0 3,650,859 + AO353_16445 0.20 -0.1 3,650,859 + AO353_16445 0.20 +0.8 3,650,859 + AO353_16445 0.20 -0.5 3,650,859 + AO353_16445 0.20 -0.3 3,650,859 + AO353_16445 0.20 +0.4 3,650,860 - AO353_16445 0.20 -0.9 3,650,860 - AO353_16445 0.20 -0.5 3,650,860 - AO353_16445 0.20 +0.9 3,650,899 + AO353_16445 0.23 -0.3 3,650,899 + AO353_16445 0.23 -0.9 3,650,899 + AO353_16445 0.23 +0.5 3,650,899 + AO353_16445 0.23 +0.8 3,650,900 - AO353_16445 0.23 -0.2 3,650,900 - AO353_16445 0.23 -0.9 3,650,900 - AO353_16445 0.23 -0.4 3,651,001 + AO353_16445 0.32 -0.2 3,651,001 + AO353_16445 0.32 -0.4 3,651,001 + AO353_16445 0.32 +0.1 3,651,001 + AO353_16445 0.32 -0.5 3,651,001 + AO353_16445 0.32 +1.6 3,651,001 + AO353_16445 0.32 -0.5 3,651,001 + AO353_16445 0.32 +0.7 3,651,001 + AO353_16445 0.32 +0.7 3,651,002 - AO353_16445 0.32 -1.1 3,651,002 - AO353_16445 0.32 -0.2 3,651,002 - AO353_16445 0.32 -0.0 3,651,002 - AO353_16445 0.32 -0.3 3,651,002 - AO353_16445 0.32 +0.2 3,651,010 + AO353_16445 0.32 +0.6 3,651,011 - AO353_16445 0.32 -0.8 3,651,184 + AO353_16445 0.47 +0.6 3,651,184 + AO353_16445 0.47 +1.8 3,651,184 + AO353_16445 0.47 +0.1 3,651,184 + AO353_16445 0.47 +1.8 3,651,184 + AO353_16445 0.47 +0.5 3,651,185 - AO353_16445 0.47 +0.8 3,651,196 + AO353_16445 0.48 +0.1 3,651,196 + AO353_16445 0.48 +1.0 3,651,197 - AO353_16445 0.48 +0.7 3,651,332 + AO353_16445 0.59 +2.5 3,651,391 + AO353_16445 0.64 +0.7 3,651,391 + AO353_16445 0.64 -0.2 3,651,391 + AO353_16445 0.64 +0.8 3,651,391 + AO353_16445 0.64 -0.2 3,651,391 + AO353_16445 0.64 -0.5 3,651,391 + AO353_16445 0.64 -0.1 3,651,391 + AO353_16445 0.64 -0.1 3,651,391 + AO353_16445 0.64 +0.8 3,651,392 - AO353_16445 0.64 +0.5 3,651,392 - AO353_16445 0.64 +0.1 3,651,392 - AO353_16445 0.64 +0.0 3,651,392 - AO353_16445 0.64 +0.1 3,651,392 - AO353_16445 0.64 +0.4
Or see this region's nucleotide sequence