Experiment: D-Xylose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE53_000629 and ABIE53_000630 are separated by 98 nucleotides ABIE53_000630 and ABIE53_000631 are separated by 71 nucleotides ABIE53_000631 and ABIE53_000632 are separated by 13 nucleotides
ABIE53_000629: ABIE53_000629 - LysR family glycine cleavage system transcriptional activator, at 686,830 to 687,846
_000629
ABIE53_000630: ABIE53_000630 - hypothetical protein, at 687,945 to 688,271
_000630
ABIE53_000631: ABIE53_000631 - lipoyl(octanoyl) transferase, at 688,343 to 689,068
_000631
ABIE53_000632: ABIE53_000632 - lipoic acid synthetase, at 689,082 to 690,089
_000632
Position (kb) 687
688
689 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 687.044 kb on + strand, within ABIE53_000629 at 687.044 kb on + strand, within ABIE53_000629 at 687.044 kb on + strand, within ABIE53_000629 at 687.044 kb on + strand, within ABIE53_000629 at 687.044 kb on + strand, within ABIE53_000629 at 687.044 kb on + strand, within ABIE53_000629 at 687.044 kb on + strand, within ABIE53_000629 at 687.044 kb on + strand, within ABIE53_000629 at 687.045 kb on - strand, within ABIE53_000629 at 687.045 kb on - strand, within ABIE53_000629 at 687.045 kb on - strand, within ABIE53_000629 at 687.045 kb on - strand, within ABIE53_000629 at 687.045 kb on - strand, within ABIE53_000629 at 687.045 kb on - strand, within ABIE53_000629 at 687.045 kb on - strand, within ABIE53_000629 at 687.047 kb on + strand, within ABIE53_000629 at 687.047 kb on + strand, within ABIE53_000629 at 687.047 kb on + strand, within ABIE53_000629 at 687.047 kb on + strand, within ABIE53_000629 at 687.047 kb on + strand, within ABIE53_000629 at 687.047 kb on + strand, within ABIE53_000629 at 687.047 kb on + strand, within ABIE53_000629 at 687.047 kb on + strand, within ABIE53_000629 at 687.048 kb on - strand, within ABIE53_000629 at 687.048 kb on - strand, within ABIE53_000629 at 687.048 kb on - strand, within ABIE53_000629 at 687.048 kb on - strand, within ABIE53_000629 at 687.048 kb on - strand, within ABIE53_000629 at 687.188 kb on + strand, within ABIE53_000629 at 687.188 kb on + strand, within ABIE53_000629 at 687.188 kb on + strand, within ABIE53_000629 at 687.189 kb on - strand, within ABIE53_000629 at 687.189 kb on - strand, within ABIE53_000629 at 687.189 kb on - strand, within ABIE53_000629 at 687.377 kb on + strand, within ABIE53_000629 at 687.377 kb on + strand, within ABIE53_000629 at 687.378 kb on - strand, within ABIE53_000629 at 687.389 kb on + strand, within ABIE53_000629 at 687.389 kb on + strand, within ABIE53_000629 at 687.389 kb on + strand, within ABIE53_000629 at 687.389 kb on + strand, within ABIE53_000629 at 687.389 kb on + strand, within ABIE53_000629 at 687.389 kb on + strand, within ABIE53_000629 at 687.390 kb on - strand, within ABIE53_000629 at 687.390 kb on - strand, within ABIE53_000629 at 687.390 kb on - strand, within ABIE53_000629 at 687.390 kb on - strand, within ABIE53_000629 at 687.390 kb on - strand, within ABIE53_000629 at 687.390 kb on - strand, within ABIE53_000629 at 687.398 kb on + strand, within ABIE53_000629 at 687.496 kb on - strand, within ABIE53_000629 at 687.863 kb on + strand at 687.863 kb on + strand at 687.864 kb on - strand at 687.889 kb on + strand at 687.900 kb on + strand at 687.906 kb on + strand at 687.914 kb on + strand at 687.955 kb on + strand at 687.956 kb on - strand at 687.962 kb on + strand at 687.962 kb on + strand at 687.963 kb on - strand at 687.983 kb on + strand, within ABIE53_000630 at 688.080 kb on + strand, within ABIE53_000630 at 688.080 kb on + strand, within ABIE53_000630 at 688.080 kb on + strand, within ABIE53_000630 at 688.080 kb on + strand, within ABIE53_000630 at 688.080 kb on + strand, within ABIE53_000630 at 688.080 kb on + strand, within ABIE53_000630 at 688.081 kb on - strand, within ABIE53_000630 at 688.081 kb on - strand, within ABIE53_000630 at 688.081 kb on - strand, within ABIE53_000630 at 688.081 kb on - strand, within ABIE53_000630 at 688.081 kb on - strand, within ABIE53_000630 at 688.081 kb on - strand, within ABIE53_000630 at 688.320 kb on + strand at 688.321 kb on - strand at 688.321 kb on - strand at 688.321 kb on - strand at 688.371 kb on + strand at 688.371 kb on + strand at 688.371 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Xylose (C) remove 687,044 + ABIE53_000629 0.21 -0.4 687,044 + ABIE53_000629 0.21 -1.4 687,044 + ABIE53_000629 0.21 -0.3 687,044 + ABIE53_000629 0.21 -0.5 687,044 + ABIE53_000629 0.21 -0.1 687,044 + ABIE53_000629 0.21 +0.7 687,044 + ABIE53_000629 0.21 +0.2 687,044 + ABIE53_000629 0.21 +0.1 687,045 - ABIE53_000629 0.21 +1.8 687,045 - ABIE53_000629 0.21 -0.2 687,045 - ABIE53_000629 0.21 -0.8 687,045 - ABIE53_000629 0.21 -0.2 687,045 - ABIE53_000629 0.21 -0.2 687,045 - ABIE53_000629 0.21 -1.2 687,045 - ABIE53_000629 0.21 +0.3 687,047 + ABIE53_000629 0.21 +0.8 687,047 + ABIE53_000629 0.21 -0.1 687,047 + ABIE53_000629 0.21 +0.5 687,047 + ABIE53_000629 0.21 -0.2 687,047 + ABIE53_000629 0.21 +1.8 687,047 + ABIE53_000629 0.21 +1.4 687,047 + ABIE53_000629 0.21 -0.4 687,047 + ABIE53_000629 0.21 +0.8 687,048 - ABIE53_000629 0.21 -0.2 687,048 - ABIE53_000629 0.21 -0.3 687,048 - ABIE53_000629 0.21 +0.2 687,048 - ABIE53_000629 0.21 -0.6 687,048 - ABIE53_000629 0.21 -0.0 687,188 + ABIE53_000629 0.35 +0.1 687,188 + ABIE53_000629 0.35 -1.7 687,188 + ABIE53_000629 0.35 -0.6 687,189 - ABIE53_000629 0.35 +1.6 687,189 - ABIE53_000629 0.35 +0.2 687,189 - ABIE53_000629 0.35 -0.2 687,377 + ABIE53_000629 0.54 -0.7 687,377 + ABIE53_000629 0.54 -0.1 687,378 - ABIE53_000629 0.54 +0.8 687,389 + ABIE53_000629 0.55 -0.2 687,389 + ABIE53_000629 0.55 -1.1 687,389 + ABIE53_000629 0.55 -0.5 687,389 + ABIE53_000629 0.55 +0.6 687,389 + ABIE53_000629 0.55 +1.2 687,389 + ABIE53_000629 0.55 +4.1 687,390 - ABIE53_000629 0.55 -0.3 687,390 - ABIE53_000629 0.55 -1.4 687,390 - ABIE53_000629 0.55 -0.4 687,390 - ABIE53_000629 0.55 +1.8 687,390 - ABIE53_000629 0.55 +0.2 687,390 - ABIE53_000629 0.55 -0.4 687,398 + ABIE53_000629 0.56 -1.4 687,496 - ABIE53_000629 0.65 +0.2 687,863 + +0.2 687,863 + +1.2 687,864 - +0.4 687,889 + -1.0 687,900 + -0.2 687,906 + -0.4 687,914 + -0.2 687,955 + -0.5 687,956 - -1.5 687,962 + +1.8 687,962 + -0.4 687,963 - +1.1 687,983 + ABIE53_000630 0.12 -0.9 688,080 + ABIE53_000630 0.41 -0.5 688,080 + ABIE53_000630 0.41 +0.9 688,080 + ABIE53_000630 0.41 -0.1 688,080 + ABIE53_000630 0.41 +0.4 688,080 + ABIE53_000630 0.41 +0.2 688,080 + ABIE53_000630 0.41 +0.2 688,081 - ABIE53_000630 0.42 -0.2 688,081 - ABIE53_000630 0.42 +0.8 688,081 - ABIE53_000630 0.42 +0.1 688,081 - ABIE53_000630 0.42 -0.7 688,081 - ABIE53_000630 0.42 -0.1 688,081 - ABIE53_000630 0.42 -0.1 688,320 + +0.7 688,321 - +1.5 688,321 - -0.1 688,321 - -0.1 688,371 + +0.3 688,371 + -1.1 688,371 + +0.4
Or see this region's nucleotide sequence