Experiment: casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE51_RS00805 and ABIE51_RS00810 are separated by 54 nucleotides ABIE51_RS00810 and ABIE51_RS00815 are separated by 43 nucleotides ABIE51_RS00815 and ABIE51_RS00820 are separated by 118 nucleotides ABIE51_RS00820 and ABIE51_RS00825 are separated by 111 nucleotides
ABIE51_RS00805: ABIE51_RS00805 - biopolymer transporter ExbD, at 169,257 to 169,676
_RS00805
ABIE51_RS00810: ABIE51_RS00810 - pyridoxine 5'-phosphate synthase, at 169,731 to 170,501
_RS00810
ABIE51_RS00815: ABIE51_RS00815 - hypothetical protein, at 170,545 to 171,048
_RS00815
ABIE51_RS00820: ABIE51_RS00820 - hypothetical protein, at 171,167 to 171,430
_RS00820
ABIE51_RS00825: ABIE51_RS00825 - cardiolipin synthase, at 171,542 to 172,979
_RS00825
Position (kb) 170
171
172 Strain fitness (log2 ratio) -1
0
1
2 at 169.571 kb on + strand, within ABIE51_RS00805 at 169.608 kb on + strand, within ABIE51_RS00805 at 169.608 kb on + strand, within ABIE51_RS00805 at 169.609 kb on - strand, within ABIE51_RS00805 at 169.609 kb on - strand, within ABIE51_RS00805 at 169.609 kb on - strand, within ABIE51_RS00805 at 169.609 kb on - strand, within ABIE51_RS00805 at 169.609 kb on - strand, within ABIE51_RS00805 at 169.674 kb on + strand at 169.674 kb on + strand at 169.675 kb on - strand at 170.493 kb on + strand at 170.493 kb on + strand at 170.494 kb on - strand at 170.573 kb on + strand at 170.573 kb on + strand at 170.573 kb on + strand at 170.573 kb on + strand at 170.573 kb on + strand at 170.574 kb on - strand at 170.574 kb on - strand at 170.574 kb on - strand at 170.574 kb on - strand at 170.574 kb on - strand at 170.574 kb on - strand at 170.574 kb on - strand at 170.591 kb on + strand at 170.591 kb on + strand at 170.592 kb on - strand at 170.592 kb on - strand at 170.592 kb on - strand at 170.609 kb on + strand, within ABIE51_RS00815 at 170.609 kb on + strand, within ABIE51_RS00815 at 170.609 kb on + strand, within ABIE51_RS00815 at 170.609 kb on + strand, within ABIE51_RS00815 at 170.609 kb on + strand, within ABIE51_RS00815 at 170.609 kb on + strand, within ABIE51_RS00815 at 170.610 kb on - strand, within ABIE51_RS00815 at 170.610 kb on - strand, within ABIE51_RS00815 at 170.610 kb on - strand, within ABIE51_RS00815 at 170.610 kb on - strand, within ABIE51_RS00815 at 170.610 kb on - strand, within ABIE51_RS00815 at 170.610 kb on - strand, within ABIE51_RS00815 at 170.648 kb on + strand, within ABIE51_RS00815 at 170.648 kb on + strand, within ABIE51_RS00815 at 170.648 kb on + strand, within ABIE51_RS00815 at 170.648 kb on + strand, within ABIE51_RS00815 at 170.648 kb on + strand, within ABIE51_RS00815 at 170.648 kb on + strand, within ABIE51_RS00815 at 170.648 kb on + strand, within ABIE51_RS00815 at 170.649 kb on - strand, within ABIE51_RS00815 at 170.649 kb on - strand, within ABIE51_RS00815 at 170.649 kb on - strand, within ABIE51_RS00815 at 170.649 kb on - strand, within ABIE51_RS00815 at 170.649 kb on - strand, within ABIE51_RS00815 at 170.649 kb on - strand, within ABIE51_RS00815 at 170.649 kb on - strand, within ABIE51_RS00815 at 170.649 kb on - strand, within ABIE51_RS00815 at 170.649 kb on - strand, within ABIE51_RS00815 at 170.649 kb on - strand, within ABIE51_RS00815 at 170.649 kb on - strand, within ABIE51_RS00815 at 170.649 kb on - strand, within ABIE51_RS00815 at 170.649 kb on - strand, within ABIE51_RS00815 at 170.649 kb on - strand, within ABIE51_RS00815 at 170.649 kb on - strand, within ABIE51_RS00815 at 170.649 kb on - strand, within ABIE51_RS00815 at 170.649 kb on - strand, within ABIE51_RS00815 at 170.649 kb on - strand, within ABIE51_RS00815 at 170.649 kb on - strand, within ABIE51_RS00815 at 170.687 kb on + strand, within ABIE51_RS00815 at 170.687 kb on + strand, within ABIE51_RS00815 at 170.687 kb on + strand, within ABIE51_RS00815 at 170.687 kb on + strand, within ABIE51_RS00815 at 170.688 kb on - strand, within ABIE51_RS00815 at 170.688 kb on - strand, within ABIE51_RS00815 at 170.688 kb on - strand, within ABIE51_RS00815 at 170.688 kb on - strand, within ABIE51_RS00815 at 170.688 kb on - strand, within ABIE51_RS00815 at 170.688 kb on - strand, within ABIE51_RS00815 at 170.688 kb on - strand, within ABIE51_RS00815 at 170.853 kb on - strand, within ABIE51_RS00815 at 170.853 kb on - strand, within ABIE51_RS00815 at 170.865 kb on + strand, within ABIE51_RS00815 at 170.866 kb on - strand, within ABIE51_RS00815 at 171.122 kb on + strand at 171.122 kb on + strand at 171.122 kb on + strand at 171.123 kb on - strand at 171.123 kb on - strand at 171.123 kb on - strand at 171.125 kb on + strand at 171.125 kb on + strand at 171.125 kb on + strand at 171.125 kb on + strand at 171.126 kb on - strand at 171.126 kb on - strand at 171.126 kb on - strand at 171.126 kb on - strand at 171.417 kb on + strand at 171.417 kb on + strand at 171.417 kb on + strand at 171.417 kb on + strand at 171.417 kb on + strand at 171.417 kb on + strand at 171.417 kb on + strand at 171.417 kb on + strand at 171.418 kb on - strand at 171.418 kb on - strand at 171.418 kb on - strand at 171.418 kb on - strand at 171.418 kb on - strand at 171.418 kb on - strand at 171.418 kb on - strand at 171.445 kb on + strand at 171.445 kb on + strand at 171.445 kb on + strand at 171.446 kb on - strand at 171.446 kb on - strand at 171.446 kb on - strand at 171.446 kb on - strand at 171.468 kb on + strand at 171.468 kb on + strand at 171.468 kb on + strand at 171.468 kb on + strand at 171.469 kb on - strand at 171.469 kb on - strand at 171.469 kb on - strand at 171.807 kb on + strand, within ABIE51_RS00825 at 171.807 kb on + strand, within ABIE51_RS00825 at 171.807 kb on + strand, within ABIE51_RS00825 at 171.849 kb on + strand, within ABIE51_RS00825 at 171.849 kb on + strand, within ABIE51_RS00825 at 171.849 kb on + strand, within ABIE51_RS00825 at 171.849 kb on + strand, within ABIE51_RS00825 at 171.850 kb on - strand, within ABIE51_RS00825 at 171.973 kb on - strand, within ABIE51_RS00825 at 171.973 kb on - strand, within ABIE51_RS00825 at 171.973 kb on - strand, within ABIE51_RS00825
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos (C) remove 169,571 + ABIE51_RS00805 0.75 +0.4 169,608 + ABIE51_RS00805 0.84 +0.1 169,608 + ABIE51_RS00805 0.84 +0.6 169,609 - ABIE51_RS00805 0.84 -0.4 169,609 - ABIE51_RS00805 0.84 +0.6 169,609 - ABIE51_RS00805 0.84 -0.2 169,609 - ABIE51_RS00805 0.84 +0.8 169,609 - ABIE51_RS00805 0.84 -0.1 169,674 + +0.3 169,674 + +0.2 169,675 - +0.2 170,493 + -0.1 170,493 + +0.1 170,494 - +0.7 170,573 + -0.3 170,573 + -0.1 170,573 + +0.1 170,573 + +0.0 170,573 + +0.4 170,574 - +1.6 170,574 - -0.7 170,574 - +0.1 170,574 - -0.7 170,574 - +0.0 170,574 - +0.5 170,574 - -0.5 170,591 + -0.7 170,591 + -0.1 170,592 - -0.0 170,592 - -0.2 170,592 - +0.1 170,609 + ABIE51_RS00815 0.13 -1.0 170,609 + ABIE51_RS00815 0.13 +0.2 170,609 + ABIE51_RS00815 0.13 +0.4 170,609 + ABIE51_RS00815 0.13 -0.3 170,609 + ABIE51_RS00815 0.13 +1.2 170,609 + ABIE51_RS00815 0.13 -0.0 170,610 - ABIE51_RS00815 0.13 +0.6 170,610 - ABIE51_RS00815 0.13 +0.5 170,610 - ABIE51_RS00815 0.13 -0.8 170,610 - ABIE51_RS00815 0.13 -0.4 170,610 - ABIE51_RS00815 0.13 -0.4 170,610 - ABIE51_RS00815 0.13 -0.1 170,648 + ABIE51_RS00815 0.20 -0.2 170,648 + ABIE51_RS00815 0.20 +0.0 170,648 + ABIE51_RS00815 0.20 -0.2 170,648 + ABIE51_RS00815 0.20 -0.0 170,648 + ABIE51_RS00815 0.20 +0.3 170,648 + ABIE51_RS00815 0.20 -0.1 170,648 + ABIE51_RS00815 0.20 +0.4 170,649 - ABIE51_RS00815 0.21 -0.3 170,649 - ABIE51_RS00815 0.21 -0.2 170,649 - ABIE51_RS00815 0.21 -0.5 170,649 - ABIE51_RS00815 0.21 +0.3 170,649 - ABIE51_RS00815 0.21 -0.3 170,649 - ABIE51_RS00815 0.21 +0.0 170,649 - ABIE51_RS00815 0.21 -0.4 170,649 - ABIE51_RS00815 0.21 +0.4 170,649 - ABIE51_RS00815 0.21 +0.4 170,649 - ABIE51_RS00815 0.21 +0.2 170,649 - ABIE51_RS00815 0.21 +0.1 170,649 - ABIE51_RS00815 0.21 +0.2 170,649 - ABIE51_RS00815 0.21 -0.0 170,649 - ABIE51_RS00815 0.21 -0.3 170,649 - ABIE51_RS00815 0.21 -0.2 170,649 - ABIE51_RS00815 0.21 +0.6 170,649 - ABIE51_RS00815 0.21 +0.7 170,649 - ABIE51_RS00815 0.21 -0.1 170,649 - ABIE51_RS00815 0.21 -0.4 170,687 + ABIE51_RS00815 0.28 +0.2 170,687 + ABIE51_RS00815 0.28 -0.7 170,687 + ABIE51_RS00815 0.28 -0.4 170,687 + ABIE51_RS00815 0.28 -0.0 170,688 - ABIE51_RS00815 0.28 -0.1 170,688 - ABIE51_RS00815 0.28 -0.2 170,688 - ABIE51_RS00815 0.28 -0.0 170,688 - ABIE51_RS00815 0.28 -0.1 170,688 - ABIE51_RS00815 0.28 -0.4 170,688 - ABIE51_RS00815 0.28 -0.3 170,688 - ABIE51_RS00815 0.28 -0.3 170,853 - ABIE51_RS00815 0.61 +0.6 170,853 - ABIE51_RS00815 0.61 -0.4 170,865 + ABIE51_RS00815 0.63 +0.3 170,866 - ABIE51_RS00815 0.64 -0.0 171,122 + -0.3 171,122 + -0.5 171,122 + -0.1 171,123 - -0.2 171,123 - +0.1 171,123 - +0.0 171,125 + -0.1 171,125 + -0.4 171,125 + +0.5 171,125 + +0.3 171,126 - -0.5 171,126 - +0.2 171,126 - -0.4 171,126 - +0.1 171,417 + -0.0 171,417 + +0.3 171,417 + +0.3 171,417 + -0.0 171,417 + -1.3 171,417 + -0.3 171,417 + -0.1 171,417 + +0.1 171,418 - -0.3 171,418 - -0.7 171,418 - -0.2 171,418 - -0.4 171,418 - -0.9 171,418 - -0.1 171,418 - -0.7 171,445 + +2.3 171,445 + +0.3 171,445 + -0.1 171,446 - -0.1 171,446 - -0.1 171,446 - +0.4 171,446 - +0.1 171,468 + +0.5 171,468 + -0.3 171,468 + -0.0 171,468 + +0.7 171,469 - -0.7 171,469 - -0.1 171,469 - +0.8 171,807 + ABIE51_RS00825 0.18 +0.0 171,807 + ABIE51_RS00825 0.18 -0.4 171,807 + ABIE51_RS00825 0.18 +0.3 171,849 + ABIE51_RS00825 0.21 +1.9 171,849 + ABIE51_RS00825 0.21 +0.3 171,849 + ABIE51_RS00825 0.21 -0.2 171,849 + ABIE51_RS00825 0.21 +0.3 171,850 - ABIE51_RS00825 0.21 +0.4 171,973 - ABIE51_RS00825 0.30 -1.5 171,973 - ABIE51_RS00825 0.30 +0.0 171,973 - ABIE51_RS00825 0.30 +0.2
Or see this region's nucleotide sequence