Experiment: Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RALBFv3_RS20490 and RALBFv3_RS20495 overlap by 4 nucleotides RALBFv3_RS20495 and RALBFv3_RS20500 are separated by 58 nucleotides RALBFv3_RS20500 and RALBFv3_RS20505 are separated by 68 nucleotides
RALBFv3_RS20490: RALBFv3_RS20490 - cobaltochelatase subunit CobN, at 1,295,215 to 1,299,303
_RS20490
RALBFv3_RS20495: RALBFv3_RS20495 - magnesium chelatase, at 1,299,300 to 1,301,204
_RS20495
RALBFv3_RS20500: RALBFv3_RS20500 - cobalt-precorrin-7 (C(5))-methyltransferase, at 1,301,263 to 1,301,970
_RS20500
RALBFv3_RS20505: RALBFv3_RS20505 - membrane protein, at 1,302,039 to 1,303,610
_RS20505
Position (kb) 1299
1300
1301
1302 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1298.498 kb on - strand, within RALBFv3_RS20490 at 1298.498 kb on - strand, within RALBFv3_RS20490 at 1298.566 kb on + strand, within RALBFv3_RS20490 at 1298.596 kb on + strand, within RALBFv3_RS20490 at 1298.665 kb on + strand, within RALBFv3_RS20490 at 1298.666 kb on - strand, within RALBFv3_RS20490 at 1298.683 kb on + strand, within RALBFv3_RS20490 at 1298.684 kb on - strand, within RALBFv3_RS20490 at 1298.684 kb on - strand, within RALBFv3_RS20490 at 1298.809 kb on + strand, within RALBFv3_RS20490 at 1298.809 kb on + strand, within RALBFv3_RS20490 at 1298.810 kb on - strand, within RALBFv3_RS20490 at 1298.810 kb on - strand, within RALBFv3_RS20490 at 1298.818 kb on + strand, within RALBFv3_RS20490 at 1298.818 kb on + strand, within RALBFv3_RS20490 at 1298.998 kb on + strand at 1298.998 kb on + strand at 1298.999 kb on - strand at 1299.034 kb on + strand at 1299.035 kb on - strand at 1299.035 kb on - strand at 1299.082 kb on + strand at 1299.083 kb on - strand at 1299.103 kb on + strand at 1299.103 kb on + strand at 1299.104 kb on - strand at 1299.702 kb on + strand, within RALBFv3_RS20495 at 1299.702 kb on + strand, within RALBFv3_RS20495 at 1299.702 kb on + strand, within RALBFv3_RS20495 at 1299.702 kb on + strand, within RALBFv3_RS20495 at 1299.702 kb on + strand, within RALBFv3_RS20495 at 1299.702 kb on + strand, within RALBFv3_RS20495 at 1299.702 kb on + strand, within RALBFv3_RS20495 at 1299.703 kb on - strand, within RALBFv3_RS20495 at 1299.703 kb on - strand, within RALBFv3_RS20495 at 1299.703 kb on - strand, within RALBFv3_RS20495 at 1299.703 kb on - strand, within RALBFv3_RS20495 at 1299.704 kb on + strand, within RALBFv3_RS20495 at 1299.705 kb on - strand, within RALBFv3_RS20495 at 1299.774 kb on - strand, within RALBFv3_RS20495 at 1300.755 kb on + strand, within RALBFv3_RS20495 at 1300.756 kb on - strand, within RALBFv3_RS20495 at 1301.086 kb on - strand at 1301.086 kb on - strand at 1301.780 kb on - strand, within RALBFv3_RS20500 at 1301.985 kb on + strand at 1301.985 kb on + strand at 1301.986 kb on - strand at 1301.986 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted remove 1,298,498 - RALBFv3_RS20490 0.80 -0.9 1,298,498 - RALBFv3_RS20490 0.80 -0.1 1,298,566 + RALBFv3_RS20490 0.82 -0.6 1,298,596 + RALBFv3_RS20490 0.83 -0.4 1,298,665 + RALBFv3_RS20490 0.84 -2.0 1,298,666 - RALBFv3_RS20490 0.84 -0.3 1,298,683 + RALBFv3_RS20490 0.85 -0.3 1,298,684 - RALBFv3_RS20490 0.85 -0.4 1,298,684 - RALBFv3_RS20490 0.85 -0.1 1,298,809 + RALBFv3_RS20490 0.88 +0.3 1,298,809 + RALBFv3_RS20490 0.88 +1.6 1,298,810 - RALBFv3_RS20490 0.88 +0.1 1,298,810 - RALBFv3_RS20490 0.88 -1.1 1,298,818 + RALBFv3_RS20490 0.88 -0.5 1,298,818 + RALBFv3_RS20490 0.88 -0.7 1,298,998 + -1.4 1,298,998 + -0.5 1,298,999 - -0.5 1,299,034 + -0.9 1,299,035 - +1.3 1,299,035 - -0.1 1,299,082 + -0.3 1,299,083 - -1.3 1,299,103 + -0.3 1,299,103 + +1.0 1,299,104 - -1.0 1,299,702 + RALBFv3_RS20495 0.21 +2.2 1,299,702 + RALBFv3_RS20495 0.21 +0.6 1,299,702 + RALBFv3_RS20495 0.21 -1.5 1,299,702 + RALBFv3_RS20495 0.21 -0.8 1,299,702 + RALBFv3_RS20495 0.21 -0.7 1,299,702 + RALBFv3_RS20495 0.21 -0.3 1,299,702 + RALBFv3_RS20495 0.21 +0.1 1,299,703 - RALBFv3_RS20495 0.21 -0.4 1,299,703 - RALBFv3_RS20495 0.21 -1.6 1,299,703 - RALBFv3_RS20495 0.21 -0.6 1,299,703 - RALBFv3_RS20495 0.21 -1.7 1,299,704 + RALBFv3_RS20495 0.21 -1.4 1,299,705 - RALBFv3_RS20495 0.21 -1.1 1,299,774 - RALBFv3_RS20495 0.25 -0.2 1,300,755 + RALBFv3_RS20495 0.76 -0.7 1,300,756 - RALBFv3_RS20495 0.76 -0.6 1,301,086 - +1.0 1,301,086 - -0.9 1,301,780 - RALBFv3_RS20500 0.73 +0.6 1,301,985 + -0.3 1,301,985 + -1.8 1,301,986 - -1.8 1,301,986 - -0.7
Or see this region's nucleotide sequence