Experiment: Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RALBFv3_RS18400 and RALBFv3_RS18405 are separated by 114 nucleotides RALBFv3_RS18405 and RALBFv3_RS18410 are separated by 43 nucleotides RALBFv3_RS18410 and RALBFv3_RS18415 are separated by 153 nucleotides
RALBFv3_RS18400: RALBFv3_RS18400 - hypothetical protein, at 654,674 to 655,441
_RS18400
RALBFv3_RS18405: RALBFv3_RS18405 - alpha/beta hydrolase, at 655,556 to 656,575
_RS18405
RALBFv3_RS18410: RALBFv3_RS18410 - organic hydroperoxide resistance protein, at 656,619 to 657,044
_RS18410
RALBFv3_RS18415: RALBFv3_RS18415 - MarR family transcriptional regulator, at 657,198 to 657,668
_RS18415
Position (kb) 655
656
657 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 654.661 kb on + strand at 654.666 kb on + strand at 654.666 kb on + strand at 654.666 kb on + strand at 654.811 kb on + strand, within RALBFv3_RS18400 at 654.998 kb on + strand, within RALBFv3_RS18400 at 655.294 kb on + strand, within RALBFv3_RS18400 at 655.294 kb on + strand, within RALBFv3_RS18400 at 655.319 kb on + strand, within RALBFv3_RS18400 at 655.552 kb on + strand at 655.552 kb on + strand at 655.557 kb on + strand at 655.557 kb on + strand at 655.557 kb on + strand at 655.557 kb on + strand at 655.557 kb on + strand at 655.557 kb on + strand at 655.558 kb on - strand at 655.558 kb on - strand at 655.715 kb on - strand, within RALBFv3_RS18405 at 655.848 kb on + strand, within RALBFv3_RS18405 at 656.157 kb on + strand, within RALBFv3_RS18405 at 656.157 kb on + strand, within RALBFv3_RS18405 at 656.157 kb on + strand, within RALBFv3_RS18405 at 656.158 kb on - strand, within RALBFv3_RS18405 at 656.158 kb on - strand, within RALBFv3_RS18405 at 656.158 kb on - strand, within RALBFv3_RS18405 at 656.158 kb on - strand, within RALBFv3_RS18405 at 656.352 kb on - strand, within RALBFv3_RS18405 at 656.372 kb on + strand, within RALBFv3_RS18405 at 657.059 kb on + strand at 657.059 kb on + strand at 657.060 kb on - strand at 657.562 kb on - strand, within RALBFv3_RS18415 at 657.562 kb on - strand, within RALBFv3_RS18415 at 657.562 kb on - strand, within RALBFv3_RS18415 at 657.562 kb on - strand, within RALBFv3_RS18415
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted remove 654,661 + +0.7 654,666 + +0.9 654,666 + +0.6 654,666 + +1.4 654,811 + RALBFv3_RS18400 0.18 +1.0 654,998 + RALBFv3_RS18400 0.42 -0.7 655,294 + RALBFv3_RS18400 0.81 -0.9 655,294 + RALBFv3_RS18400 0.81 -1.2 655,319 + RALBFv3_RS18400 0.84 -0.7 655,552 + +3.7 655,552 + -1.3 655,557 + -1.4 655,557 + +1.2 655,557 + -0.6 655,557 + -1.0 655,557 + +0.5 655,557 + -1.0 655,558 - -0.1 655,558 - +0.4 655,715 - RALBFv3_RS18405 0.16 -1.1 655,848 + RALBFv3_RS18405 0.29 -0.3 656,157 + RALBFv3_RS18405 0.59 -0.1 656,157 + RALBFv3_RS18405 0.59 -0.9 656,157 + RALBFv3_RS18405 0.59 -0.8 656,158 - RALBFv3_RS18405 0.59 -0.7 656,158 - RALBFv3_RS18405 0.59 +1.4 656,158 - RALBFv3_RS18405 0.59 -1.4 656,158 - RALBFv3_RS18405 0.59 +2.0 656,352 - RALBFv3_RS18405 0.78 -0.4 656,372 + RALBFv3_RS18405 0.80 -1.7 657,059 + +2.2 657,059 + -2.3 657,060 - +0.2 657,562 - RALBFv3_RS18415 0.77 -2.3 657,562 - RALBFv3_RS18415 0.77 +0.4 657,562 - RALBFv3_RS18415 0.77 +2.1 657,562 - RALBFv3_RS18415 0.77 -0.4
Or see this region's nucleotide sequence