Experiment: Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RALBFv3_RS17625 and RALBFv3_RS17630 overlap by 4 nucleotides RALBFv3_RS17630 and RALBFv3_RS17635 overlap by 4 nucleotides RALBFv3_RS17635 and RALBFv3_RS17640 are separated by 444 nucleotides
RALBFv3_RS17625: RALBFv3_RS17625 - DUF4178 domain-containing protein, at 454,812 to 456,260
_RS17625
RALBFv3_RS17630: RALBFv3_RS17630 - hypothetical protein, at 456,257 to 456,442
_RS17630
RALBFv3_RS17635: RALBFv3_RS17635 - adenosylmethionine decarboxylase, at 456,439 to 456,861
_RS17635
RALBFv3_RS17640: RALBFv3_RS17640 - chemotaxis protein, at 457,306 to 458,028
_RS17640
Position (kb) 456
457 Strain fitness (log2 ratio) -2
-1
0
1 at 455.731 kb on - strand, within RALBFv3_RS17625 at 455.739 kb on + strand, within RALBFv3_RS17625 at 455.739 kb on + strand, within RALBFv3_RS17625 at 455.739 kb on + strand, within RALBFv3_RS17625 at 455.739 kb on + strand, within RALBFv3_RS17625 at 455.740 kb on - strand, within RALBFv3_RS17625 at 455.880 kb on + strand, within RALBFv3_RS17625 at 455.881 kb on - strand, within RALBFv3_RS17625 at 455.898 kb on + strand, within RALBFv3_RS17625 at 455.898 kb on + strand, within RALBFv3_RS17625 at 455.898 kb on + strand, within RALBFv3_RS17625 at 455.899 kb on - strand, within RALBFv3_RS17625 at 456.102 kb on + strand, within RALBFv3_RS17625 at 456.103 kb on - strand, within RALBFv3_RS17625 at 456.309 kb on - strand, within RALBFv3_RS17630 at 456.309 kb on - strand, within RALBFv3_RS17630 at 456.354 kb on - strand, within RALBFv3_RS17630 at 456.384 kb on - strand, within RALBFv3_RS17630 at 456.714 kb on + strand, within RALBFv3_RS17635 at 457.130 kb on + strand at 457.269 kb on + strand at 457.269 kb on + strand at 457.269 kb on + strand at 457.269 kb on + strand at 457.270 kb on - strand at 457.273 kb on + strand at 457.273 kb on + strand at 457.274 kb on - strand at 457.562 kb on - strand, within RALBFv3_RS17640
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted remove 455,731 - RALBFv3_RS17625 0.63 -1.1 455,739 + RALBFv3_RS17625 0.64 -0.6 455,739 + RALBFv3_RS17625 0.64 +0.2 455,739 + RALBFv3_RS17625 0.64 -2.2 455,739 + RALBFv3_RS17625 0.64 +0.8 455,740 - RALBFv3_RS17625 0.64 -0.8 455,880 + RALBFv3_RS17625 0.74 -0.4 455,881 - RALBFv3_RS17625 0.74 -1.7 455,898 + RALBFv3_RS17625 0.75 -0.5 455,898 + RALBFv3_RS17625 0.75 -1.4 455,898 + RALBFv3_RS17625 0.75 -0.4 455,899 - RALBFv3_RS17625 0.75 -0.1 456,102 + RALBFv3_RS17625 0.89 +0.2 456,103 - RALBFv3_RS17625 0.89 -0.3 456,309 - RALBFv3_RS17630 0.28 -0.9 456,309 - RALBFv3_RS17630 0.28 -0.4 456,354 - RALBFv3_RS17630 0.52 -0.7 456,384 - RALBFv3_RS17630 0.68 -1.3 456,714 + RALBFv3_RS17635 0.65 -0.9 457,130 + +0.2 457,269 + -1.3 457,269 + -0.0 457,269 + -0.7 457,269 + -0.5 457,270 - +1.0 457,273 + -0.8 457,273 + +1.4 457,274 - -0.9 457,562 - RALBFv3_RS17640 0.35 +0.9
Or see this region's nucleotide sequence