Experiment: Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RALBFv3_RS14340 and RALBFv3_RS14345 are separated by 10 nucleotides RALBFv3_RS14345 and RALBFv3_RS14350 are separated by 64 nucleotides RALBFv3_RS14350 and RALBFv3_RS14355 are separated by 180 nucleotides
RALBFv3_RS14340: RALBFv3_RS14340 - D-glycerate dehydrogenase, at 3,134,515 to 3,135,519
_RS14340
RALBFv3_RS14345: RALBFv3_RS14345 - DNA recombination protein RmuC, at 3,135,530 to 3,136,999
_RS14345
RALBFv3_RS14350: RALBFv3_RS14350 - hypothetical protein, at 3,137,064 to 3,137,342
_RS14350
RALBFv3_RS14355: RALBFv3_RS14355 - molybdopterin molybdenumtransferase MoeA, at 3,137,523 to 3,138,809
_RS14355
Position (kb) 3135
3136
3137 Strain fitness (log2 ratio) -2
-1
0
1
2 at 3134.746 kb on + strand, within RALBFv3_RS14340 at 3134.746 kb on + strand, within RALBFv3_RS14340 at 3134.747 kb on - strand, within RALBFv3_RS14340 at 3134.920 kb on + strand, within RALBFv3_RS14340 at 3134.921 kb on - strand, within RALBFv3_RS14340 at 3134.922 kb on - strand, within RALBFv3_RS14340 at 3134.947 kb on + strand, within RALBFv3_RS14340 at 3135.088 kb on + strand, within RALBFv3_RS14340 at 3135.088 kb on + strand, within RALBFv3_RS14340 at 3135.088 kb on + strand, within RALBFv3_RS14340 at 3135.088 kb on + strand, within RALBFv3_RS14340 at 3135.088 kb on + strand, within RALBFv3_RS14340 at 3135.089 kb on - strand, within RALBFv3_RS14340 at 3135.089 kb on - strand, within RALBFv3_RS14340 at 3135.089 kb on - strand, within RALBFv3_RS14340 at 3135.089 kb on - strand, within RALBFv3_RS14340 at 3135.304 kb on + strand, within RALBFv3_RS14340 at 3135.305 kb on - strand, within RALBFv3_RS14340 at 3135.544 kb on - strand at 3135.544 kb on - strand at 3135.544 kb on - strand at 3135.546 kb on + strand at 3135.547 kb on - strand at 3136.313 kb on + strand, within RALBFv3_RS14345 at 3136.314 kb on - strand, within RALBFv3_RS14345 at 3136.560 kb on - strand, within RALBFv3_RS14345 at 3136.560 kb on - strand, within RALBFv3_RS14345 at 3137.278 kb on + strand, within RALBFv3_RS14350 at 3137.278 kb on + strand, within RALBFv3_RS14350 at 3137.279 kb on - strand, within RALBFv3_RS14350 at 3137.460 kb on - strand at 3137.464 kb on + strand at 3137.465 kb on - strand at 3137.821 kb on + strand, within RALBFv3_RS14355 at 3137.822 kb on - strand, within RALBFv3_RS14355 at 3137.822 kb on - strand, within RALBFv3_RS14355
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted remove 3,134,746 + RALBFv3_RS14340 0.23 -0.7 3,134,746 + RALBFv3_RS14340 0.23 +1.2 3,134,747 - RALBFv3_RS14340 0.23 +2.7 3,134,920 + RALBFv3_RS14340 0.40 +0.7 3,134,921 - RALBFv3_RS14340 0.40 -1.5 3,134,922 - RALBFv3_RS14340 0.40 -1.0 3,134,947 + RALBFv3_RS14340 0.43 +1.1 3,135,088 + RALBFv3_RS14340 0.57 -1.0 3,135,088 + RALBFv3_RS14340 0.57 +0.3 3,135,088 + RALBFv3_RS14340 0.57 +0.7 3,135,088 + RALBFv3_RS14340 0.57 -0.1 3,135,088 + RALBFv3_RS14340 0.57 -2.0 3,135,089 - RALBFv3_RS14340 0.57 -1.3 3,135,089 - RALBFv3_RS14340 0.57 -1.3 3,135,089 - RALBFv3_RS14340 0.57 -0.5 3,135,089 - RALBFv3_RS14340 0.57 -0.4 3,135,304 + RALBFv3_RS14340 0.79 +1.0 3,135,305 - RALBFv3_RS14340 0.79 -0.7 3,135,544 - -1.0 3,135,544 - +0.5 3,135,544 - -0.7 3,135,546 + +0.7 3,135,547 - +0.2 3,136,313 + RALBFv3_RS14345 0.53 -0.3 3,136,314 - RALBFv3_RS14345 0.53 -1.0 3,136,560 - RALBFv3_RS14345 0.70 -0.0 3,136,560 - RALBFv3_RS14345 0.70 -0.1 3,137,278 + RALBFv3_RS14350 0.77 -1.2 3,137,278 + RALBFv3_RS14350 0.77 -0.4 3,137,279 - RALBFv3_RS14350 0.77 +0.2 3,137,460 - -0.5 3,137,464 + +0.7 3,137,465 - -0.3 3,137,821 + RALBFv3_RS14355 0.23 -0.7 3,137,822 - RALBFv3_RS14355 0.23 +0.2 3,137,822 - RALBFv3_RS14355 0.23 -0.4
Or see this region's nucleotide sequence