Experiment: Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RALBFv3_RS03395 and RALBFv3_RS03400 are separated by 317 nucleotides RALBFv3_RS03400 and RALBFv3_RS03405 are separated by 34 nucleotides RALBFv3_RS03405 and RALBFv3_RS03410 are separated by 88 nucleotides
RALBFv3_RS03395: RALBFv3_RS03395 - filamentous hemagglutinin, at 740,125 to 750,345
_RS03395
RALBFv3_RS03400: RALBFv3_RS03400 - DUF2968 domain-containing protein, at 750,663 to 751,295
_RS03400
RALBFv3_RS03405: RALBFv3_RS03405 - pyroglutamyl-peptidase I, at 751,330 to 751,977
_RS03405
RALBFv3_RS03410: RALBFv3_RS03410 - C4-dicarboxylate ABC transporter, at 752,066 to 753,085
_RS03410
Position (kb) 750
751
752 Strain fitness (log2 ratio) -1
0
1
2 at 749.743 kb on - strand at 750.023 kb on + strand at 750.023 kb on + strand at 750.024 kb on - strand at 750.147 kb on - strand at 750.430 kb on + strand at 750.626 kb on + strand at 750.626 kb on + strand at 750.627 kb on - strand at 750.628 kb on + strand at 750.629 kb on - strand at 750.629 kb on - strand at 750.852 kb on + strand, within RALBFv3_RS03400 at 750.907 kb on - strand, within RALBFv3_RS03400 at 750.907 kb on - strand, within RALBFv3_RS03400 at 750.907 kb on - strand, within RALBFv3_RS03400 at 750.921 kb on + strand, within RALBFv3_RS03400 at 750.922 kb on - strand, within RALBFv3_RS03400 at 750.982 kb on - strand, within RALBFv3_RS03400 at 750.982 kb on - strand, within RALBFv3_RS03400 at 751.210 kb on - strand, within RALBFv3_RS03400 at 751.210 kb on - strand, within RALBFv3_RS03400 at 751.470 kb on - strand, within RALBFv3_RS03405 at 751.470 kb on - strand, within RALBFv3_RS03405 at 751.477 kb on - strand, within RALBFv3_RS03405 at 751.477 kb on - strand, within RALBFv3_RS03405 at 751.535 kb on + strand, within RALBFv3_RS03405 at 751.535 kb on + strand, within RALBFv3_RS03405 at 751.536 kb on - strand, within RALBFv3_RS03405 at 751.561 kb on - strand, within RALBFv3_RS03405 at 751.644 kb on - strand, within RALBFv3_RS03405 at 752.091 kb on + strand at 752.091 kb on + strand at 752.091 kb on + strand at 752.245 kb on - strand, within RALBFv3_RS03410
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted remove 749,743 - -1.4 750,023 + +0.5 750,023 + +0.2 750,024 - +1.3 750,147 - -1.2 750,430 + +0.9 750,626 + -0.8 750,626 + +0.4 750,627 - -0.7 750,628 + -0.1 750,629 - -0.1 750,629 - -0.1 750,852 + RALBFv3_RS03400 0.30 -1.7 750,907 - RALBFv3_RS03400 0.39 -0.2 750,907 - RALBFv3_RS03400 0.39 +0.5 750,907 - RALBFv3_RS03400 0.39 -0.1 750,921 + RALBFv3_RS03400 0.41 -0.2 750,922 - RALBFv3_RS03400 0.41 +0.1 750,982 - RALBFv3_RS03400 0.50 +1.0 750,982 - RALBFv3_RS03400 0.50 -0.6 751,210 - RALBFv3_RS03400 0.86 -0.6 751,210 - RALBFv3_RS03400 0.86 +0.3 751,470 - RALBFv3_RS03405 0.22 -0.9 751,470 - RALBFv3_RS03405 0.22 -1.5 751,477 - RALBFv3_RS03405 0.23 -1.0 751,477 - RALBFv3_RS03405 0.23 -1.0 751,535 + RALBFv3_RS03405 0.32 -1.4 751,535 + RALBFv3_RS03405 0.32 -0.9 751,536 - RALBFv3_RS03405 0.32 +0.2 751,561 - RALBFv3_RS03405 0.36 -0.4 751,644 - RALBFv3_RS03405 0.48 -0.7 752,091 + -0.2 752,091 + +2.7 752,091 + -0.7 752,245 - RALBFv3_RS03410 0.18 -0.9
Or see this region's nucleotide sequence