Experiment: Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RALBFv3_RS02730 and RALBFv3_RS02735 are separated by 35 nucleotides RALBFv3_RS02735 and RALBFv3_RS02740 are separated by 106 nucleotides
RALBFv3_RS02730: RALBFv3_RS02730 - pyridoxal phosphate-dependent aminotransferase, at 608,102 to 609,319
_RS02730
RALBFv3_RS02735: RALBFv3_RS02735 - glutathione S-transferase, at 609,355 to 610,011
_RS02735
RALBFv3_RS02740: RALBFv3_RS02740 - 3-hydroxyacyl-CoA dehydrogenase, at 610,118 to 611,623
_RS02740
Position (kb) 609
610
611 Strain fitness (log2 ratio) -2
-1
0
1 at 608.412 kb on - strand, within RALBFv3_RS02730 at 608.423 kb on + strand, within RALBFv3_RS02730 at 608.535 kb on - strand, within RALBFv3_RS02730 at 608.873 kb on + strand, within RALBFv3_RS02730 at 608.873 kb on + strand, within RALBFv3_RS02730 at 608.873 kb on + strand, within RALBFv3_RS02730 at 608.874 kb on - strand, within RALBFv3_RS02730 at 608.900 kb on + strand, within RALBFv3_RS02730 at 608.999 kb on + strand, within RALBFv3_RS02730 at 608.999 kb on + strand, within RALBFv3_RS02730 at 609.000 kb on - strand, within RALBFv3_RS02730 at 609.041 kb on + strand, within RALBFv3_RS02730 at 609.042 kb on - strand, within RALBFv3_RS02730 at 609.117 kb on - strand, within RALBFv3_RS02730 at 609.117 kb on - strand, within RALBFv3_RS02730 at 609.378 kb on - strand at 609.584 kb on + strand, within RALBFv3_RS02735 at 609.584 kb on + strand, within RALBFv3_RS02735 at 609.866 kb on + strand, within RALBFv3_RS02735 at 609.866 kb on + strand, within RALBFv3_RS02735 at 609.866 kb on + strand, within RALBFv3_RS02735 at 609.866 kb on + strand, within RALBFv3_RS02735 at 609.867 kb on - strand, within RALBFv3_RS02735 at 609.867 kb on - strand, within RALBFv3_RS02735 at 609.974 kb on + strand at 609.977 kb on + strand at 609.977 kb on + strand at 609.978 kb on - strand at 610.126 kb on + strand at 610.393 kb on - strand, within RALBFv3_RS02740 at 610.393 kb on - strand, within RALBFv3_RS02740 at 610.853 kb on + strand, within RALBFv3_RS02740 at 610.880 kb on + strand, within RALBFv3_RS02740 at 610.953 kb on - strand, within RALBFv3_RS02740
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted remove 608,412 - RALBFv3_RS02730 0.25 -0.5 608,423 + RALBFv3_RS02730 0.26 +0.0 608,535 - RALBFv3_RS02730 0.36 -0.4 608,873 + RALBFv3_RS02730 0.63 +0.5 608,873 + RALBFv3_RS02730 0.63 -0.7 608,873 + RALBFv3_RS02730 0.63 +0.1 608,874 - RALBFv3_RS02730 0.63 +0.8 608,900 + RALBFv3_RS02730 0.66 -1.9 608,999 + RALBFv3_RS02730 0.74 -0.5 608,999 + RALBFv3_RS02730 0.74 +0.4 609,000 - RALBFv3_RS02730 0.74 +0.3 609,041 + RALBFv3_RS02730 0.77 -0.7 609,042 - RALBFv3_RS02730 0.77 -0.8 609,117 - RALBFv3_RS02730 0.83 -1.3 609,117 - RALBFv3_RS02730 0.83 -0.7 609,378 - +0.7 609,584 + RALBFv3_RS02735 0.35 +0.5 609,584 + RALBFv3_RS02735 0.35 +1.3 609,866 + RALBFv3_RS02735 0.78 -0.4 609,866 + RALBFv3_RS02735 0.78 +0.1 609,866 + RALBFv3_RS02735 0.78 -0.4 609,866 + RALBFv3_RS02735 0.78 -0.4 609,867 - RALBFv3_RS02735 0.78 -0.3 609,867 - RALBFv3_RS02735 0.78 -1.1 609,974 + +0.6 609,977 + -0.1 609,977 + -0.3 609,978 - -0.2 610,126 + +0.1 610,393 - RALBFv3_RS02740 0.18 +1.5 610,393 - RALBFv3_RS02740 0.18 +1.6 610,853 + RALBFv3_RS02740 0.49 +1.5 610,880 + RALBFv3_RS02740 0.51 -0.6 610,953 - RALBFv3_RS02740 0.55 +1.3
Or see this region's nucleotide sequence