Experiment: Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RALBFv3_RS02505 and RALBFv3_RS02510 are separated by 203 nucleotides RALBFv3_RS02510 and RALBFv3_RS02515 are separated by 30 nucleotides RALBFv3_RS02515 and RALBFv3_RS02520 are separated by 214 nucleotides RALBFv3_RS02520 and RALBFv3_RS02525 are separated by 126 nucleotides
RALBFv3_RS02505: RALBFv3_RS02505 - hemin uptake protein HemP, at 561,239 to 561,517
_RS02505
RALBFv3_RS02510: RALBFv3_RS02510 - heme-binding protein, at 561,721 to 562,134
_RS02510
RALBFv3_RS02515: RALBFv3_RS02515 - YdcF family protein, at 562,165 to 562,962
_RS02515
RALBFv3_RS02520: RALBFv3_RS02520 - hypothetical protein, at 563,177 to 563,527
_RS02520
RALBFv3_RS02525: RALBFv3_RS02525 - hypothetical protein, at 563,654 to 563,950
_RS02525
Position (kb) 562
563 Strain fitness (log2 ratio) -2
-1
0
1
2 at 561.912 kb on - strand, within RALBFv3_RS02510 at 561.912 kb on - strand, within RALBFv3_RS02510 at 562.391 kb on + strand, within RALBFv3_RS02515 at 562.392 kb on - strand, within RALBFv3_RS02515 at 562.392 kb on - strand, within RALBFv3_RS02515 at 562.611 kb on + strand, within RALBFv3_RS02515 at 562.612 kb on - strand, within RALBFv3_RS02515 at 562.612 kb on - strand, within RALBFv3_RS02515 at 562.658 kb on + strand, within RALBFv3_RS02515 at 562.658 kb on + strand, within RALBFv3_RS02515 at 563.052 kb on - strand at 563.271 kb on + strand, within RALBFv3_RS02520 at 563.271 kb on + strand, within RALBFv3_RS02520 at 563.274 kb on + strand, within RALBFv3_RS02520 at 563.274 kb on + strand, within RALBFv3_RS02520 at 563.275 kb on - strand, within RALBFv3_RS02520 at 563.292 kb on + strand, within RALBFv3_RS02520 at 563.296 kb on - strand, within RALBFv3_RS02520 at 563.296 kb on - strand, within RALBFv3_RS02520 at 563.319 kb on + strand, within RALBFv3_RS02520 at 563.320 kb on - strand, within RALBFv3_RS02520 at 563.322 kb on + strand, within RALBFv3_RS02520 at 563.322 kb on + strand, within RALBFv3_RS02520 at 563.322 kb on + strand, within RALBFv3_RS02520 at 563.323 kb on - strand, within RALBFv3_RS02520 at 563.344 kb on - strand, within RALBFv3_RS02520 at 563.367 kb on + strand, within RALBFv3_RS02520 at 563.367 kb on + strand, within RALBFv3_RS02520 at 563.368 kb on - strand, within RALBFv3_RS02520 at 563.368 kb on - strand, within RALBFv3_RS02520 at 563.368 kb on - strand, within RALBFv3_RS02520 at 563.553 kb on + strand at 563.560 kb on - strand at 563.560 kb on - strand at 563.590 kb on - strand at 563.709 kb on + strand, within RALBFv3_RS02525 at 563.710 kb on - strand, within RALBFv3_RS02525 at 563.748 kb on + strand, within RALBFv3_RS02525 at 563.749 kb on - strand, within RALBFv3_RS02525 at 563.749 kb on - strand, within RALBFv3_RS02525
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted remove 561,912 - RALBFv3_RS02510 0.46 -1.0 561,912 - RALBFv3_RS02510 0.46 +0.1 562,391 + RALBFv3_RS02515 0.28 -0.2 562,392 - RALBFv3_RS02515 0.28 -0.3 562,392 - RALBFv3_RS02515 0.28 -1.7 562,611 + RALBFv3_RS02515 0.56 -1.0 562,612 - RALBFv3_RS02515 0.56 -0.1 562,612 - RALBFv3_RS02515 0.56 +2.2 562,658 + RALBFv3_RS02515 0.62 -1.5 562,658 + RALBFv3_RS02515 0.62 +0.5 563,052 - +0.2 563,271 + RALBFv3_RS02520 0.27 -0.5 563,271 + RALBFv3_RS02520 0.27 +0.2 563,274 + RALBFv3_RS02520 0.28 +1.6 563,274 + RALBFv3_RS02520 0.28 +0.8 563,275 - RALBFv3_RS02520 0.28 +1.8 563,292 + RALBFv3_RS02520 0.33 +2.4 563,296 - RALBFv3_RS02520 0.34 -0.2 563,296 - RALBFv3_RS02520 0.34 -1.3 563,319 + RALBFv3_RS02520 0.40 +0.2 563,320 - RALBFv3_RS02520 0.41 +1.0 563,322 + RALBFv3_RS02520 0.41 -2.3 563,322 + RALBFv3_RS02520 0.41 +1.0 563,322 + RALBFv3_RS02520 0.41 -0.5 563,323 - RALBFv3_RS02520 0.42 -1.3 563,344 - RALBFv3_RS02520 0.48 -0.1 563,367 + RALBFv3_RS02520 0.54 -0.2 563,367 + RALBFv3_RS02520 0.54 -0.2 563,368 - RALBFv3_RS02520 0.54 -0.6 563,368 - RALBFv3_RS02520 0.54 -0.5 563,368 - RALBFv3_RS02520 0.54 -1.4 563,553 + +0.8 563,560 - +0.3 563,560 - -1.2 563,590 - -0.6 563,709 + RALBFv3_RS02525 0.19 -0.5 563,710 - RALBFv3_RS02525 0.19 -0.1 563,748 + RALBFv3_RS02525 0.32 -0.9 563,749 - RALBFv3_RS02525 0.32 -0.9 563,749 - RALBFv3_RS02525 0.32 -0.8
Or see this region's nucleotide sequence