Experiment: Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RALBFv3_RS02435 and RALBFv3_RS02440 are separated by 347 nucleotides RALBFv3_RS02440 and RALBFv3_RS02445 are separated by 21 nucleotides
RALBFv3_RS02435: RALBFv3_RS02435 - tRNA-Ser, at 544,148 to 544,238
_RS02435
RALBFv3_RS02440: RALBFv3_RS02440 - cation acetate symporter, at 544,586 to 546,652
_RS02440
RALBFv3_RS02445: RALBFv3_RS02445 - acetate--CoA ligase, at 546,674 to 548,656
_RS02445
Position (kb) 544
545
546
547 Strain fitness (log2 ratio) -2
-1
0
1
2 at 543.883 kb on + strand at 543.883 kb on + strand at 543.884 kb on - strand at 544.133 kb on + strand at 544.134 kb on - strand at 544.136 kb on + strand at 544.364 kb on - strand at 544.605 kb on + strand at 544.767 kb on + strand at 544.782 kb on + strand at 544.782 kb on + strand at 544.782 kb on + strand at 544.783 kb on - strand at 544.783 kb on - strand at 544.783 kb on - strand at 544.783 kb on - strand at 544.785 kb on + strand at 545.040 kb on + strand, within RALBFv3_RS02440 at 545.040 kb on + strand, within RALBFv3_RS02440 at 545.040 kb on + strand, within RALBFv3_RS02440 at 545.040 kb on + strand, within RALBFv3_RS02440 at 545.040 kb on + strand, within RALBFv3_RS02440 at 545.041 kb on - strand, within RALBFv3_RS02440 at 545.142 kb on + strand, within RALBFv3_RS02440 at 545.370 kb on + strand, within RALBFv3_RS02440 at 545.370 kb on + strand, within RALBFv3_RS02440 at 545.371 kb on - strand, within RALBFv3_RS02440 at 545.371 kb on - strand, within RALBFv3_RS02440 at 545.968 kb on - strand, within RALBFv3_RS02440 at 546.250 kb on - strand, within RALBFv3_RS02440 at 546.280 kb on - strand, within RALBFv3_RS02440 at 546.304 kb on - strand, within RALBFv3_RS02440 at 546.318 kb on + strand, within RALBFv3_RS02440 at 546.429 kb on + strand, within RALBFv3_RS02440 at 546.429 kb on + strand, within RALBFv3_RS02440 at 546.477 kb on + strand at 546.477 kb on + strand at 546.478 kb on - strand at 546.478 kb on - strand at 546.478 kb on - strand at 546.507 kb on + strand at 546.508 kb on - strand at 546.583 kb on + strand at 547.092 kb on + strand, within RALBFv3_RS02445 at 547.093 kb on - strand, within RALBFv3_RS02445 at 547.093 kb on - strand, within RALBFv3_RS02445 at 547.093 kb on - strand, within RALBFv3_RS02445 at 547.164 kb on + strand, within RALBFv3_RS02445 at 547.315 kb on + strand, within RALBFv3_RS02445 at 547.316 kb on - strand, within RALBFv3_RS02445 at 547.316 kb on - strand, within RALBFv3_RS02445 at 547.394 kb on - strand, within RALBFv3_RS02445 at 547.503 kb on + strand, within RALBFv3_RS02445 at 547.503 kb on + strand, within RALBFv3_RS02445 at 547.576 kb on - strand, within RALBFv3_RS02445
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted remove 543,883 + -1.1 543,883 + +0.4 543,884 - +1.5 544,133 + +0.0 544,134 - +2.0 544,136 + -0.6 544,364 - -1.1 544,605 + -0.2 544,767 + +1.4 544,782 + +0.7 544,782 + -0.6 544,782 + +0.4 544,783 - -0.1 544,783 - -0.7 544,783 - -1.9 544,783 - +0.5 544,785 + -0.7 545,040 + RALBFv3_RS02440 0.22 -0.6 545,040 + RALBFv3_RS02440 0.22 -0.7 545,040 + RALBFv3_RS02440 0.22 -0.5 545,040 + RALBFv3_RS02440 0.22 +0.6 545,040 + RALBFv3_RS02440 0.22 -0.3 545,041 - RALBFv3_RS02440 0.22 -1.0 545,142 + RALBFv3_RS02440 0.27 -1.6 545,370 + RALBFv3_RS02440 0.38 +0.3 545,370 + RALBFv3_RS02440 0.38 +0.5 545,371 - RALBFv3_RS02440 0.38 -0.5 545,371 - RALBFv3_RS02440 0.38 +0.3 545,968 - RALBFv3_RS02440 0.67 -1.3 546,250 - RALBFv3_RS02440 0.81 +0.9 546,280 - RALBFv3_RS02440 0.82 -0.9 546,304 - RALBFv3_RS02440 0.83 -0.9 546,318 + RALBFv3_RS02440 0.84 -0.3 546,429 + RALBFv3_RS02440 0.89 +0.4 546,429 + RALBFv3_RS02440 0.89 -1.5 546,477 + -1.3 546,477 + -0.8 546,478 - -1.5 546,478 - +2.7 546,478 - -1.4 546,507 + +1.8 546,508 - -0.4 546,583 + +1.1 547,092 + RALBFv3_RS02445 0.21 -0.8 547,093 - RALBFv3_RS02445 0.21 +2.2 547,093 - RALBFv3_RS02445 0.21 -0.5 547,093 - RALBFv3_RS02445 0.21 +1.7 547,164 + RALBFv3_RS02445 0.25 -1.4 547,315 + RALBFv3_RS02445 0.32 -0.5 547,316 - RALBFv3_RS02445 0.32 -1.8 547,316 - RALBFv3_RS02445 0.32 +0.1 547,394 - RALBFv3_RS02445 0.36 +0.7 547,503 + RALBFv3_RS02445 0.42 -0.8 547,503 + RALBFv3_RS02445 0.42 +1.3 547,576 - RALBFv3_RS02445 0.45 -0.9
Or see this region's nucleotide sequence