Experiment: Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RALBFv3_RS02215 and RALBFv3_RS02220 are separated by 115 nucleotides RALBFv3_RS02220 and RALBFv3_RS02225 are separated by 46 nucleotides RALBFv3_RS02225 and RALBFv3_RS23620 are separated by 48 nucleotides RALBFv3_RS23620 and RALBFv3_RS02230 are separated by 169 nucleotides RALBFv3_RS02230 and RALBFv3_RS02235 are separated by 60 nucleotides
RALBFv3_RS02215: RALBFv3_RS02215 - hydroxyacylglutathione hydrolase, at 496,852 to 497,679
_RS02215
RALBFv3_RS02220: RALBFv3_RS02220 - SAM-dependent methyltransferase, at 497,795 to 498,571
_RS02220
RALBFv3_RS02225: RALBFv3_RS02225 - ribonuclease HI, at 498,618 to 499,073
_RS02225
RALBFv3_RS23620: RALBFv3_RS23620 - hypothetical protein, at 499,122 to 499,304
_RS23620
RALBFv3_RS02230: RALBFv3_RS02230 - DUF1488 domain-containing protein, at 499,474 to 499,752
_RS02230
RALBFv3_RS02235: RALBFv3_RS02235 - conjugal transfer protein TraR, at 499,813 to 500,175
_RS02235
Position (kb) 498
499
500 Strain fitness (log2 ratio) -2
-1
0
1 at 497.619 kb on + strand at 497.621 kb on + strand at 497.622 kb on - strand at 497.709 kb on + strand at 497.709 kb on + strand at 497.709 kb on + strand at 498.306 kb on - strand, within RALBFv3_RS02220 at 498.398 kb on + strand, within RALBFv3_RS02220 at 498.398 kb on + strand, within RALBFv3_RS02220 at 499.090 kb on - strand at 499.384 kb on + strand at 499.385 kb on - strand at 499.425 kb on + strand at 499.426 kb on - strand at 499.511 kb on - strand, within RALBFv3_RS02230 at 499.570 kb on + strand, within RALBFv3_RS02230 at 499.750 kb on + strand at 499.977 kb on - strand, within RALBFv3_RS02235
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted remove 497,619 + +0.4 497,621 + -0.9 497,622 - -0.0 497,709 + +0.9 497,709 + -1.6 497,709 + -0.7 498,306 - RALBFv3_RS02220 0.66 -2.2 498,398 + RALBFv3_RS02220 0.78 -1.1 498,398 + RALBFv3_RS02220 0.78 -0.7 499,090 - -0.7 499,384 + -0.1 499,385 - -0.1 499,425 + +0.9 499,426 - -1.0 499,511 - RALBFv3_RS02230 0.13 -0.7 499,570 + RALBFv3_RS02230 0.34 +0.8 499,750 + -1.0 499,977 - RALBFv3_RS02235 0.45 -1.7
Or see this region's nucleotide sequence