Strain Fitness in Ralstonia solanacearum IBSBF1503 around RALBFv3_RS01560

Experiment: Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRALBFv3_RS01555 and RALBFv3_RS01560 are separated by 178 nucleotidesRALBFv3_RS01560 and RALBFv3_RS01565 are separated by 414 nucleotidesRALBFv3_RS01565 and RALBFv3_RS01570 are separated by 10 nucleotides RALBFv3_RS01555: RALBFv3_RS01555 - hypothetical protein, at 350,796 to 352,070 _RS01555 RALBFv3_RS01560: RALBFv3_RS01560 - potassium transporter Kup, at 352,249 to 354,150 _RS01560 RALBFv3_RS01565: RALBFv3_RS01565 - hypothetical protein, at 354,565 to 354,807 _RS01565 RALBFv3_RS01570: RALBFv3_RS01570 - quinone-dependent dihydroorotate dehydrogenase, at 354,818 to 355,852 _RS01570 Position (kb) 352 353 354 355Strain fitness (log2 ratio) -2 -1 0 1at 351.505 kb on + strand, within RALBFv3_RS01555at 351.700 kb on + strand, within RALBFv3_RS01555at 351.701 kb on - strand, within RALBFv3_RS01555at 351.712 kb on + strand, within RALBFv3_RS01555at 352.060 kb on + strandat 352.476 kb on - strand, within RALBFv3_RS01560at 352.476 kb on - strand, within RALBFv3_RS01560at 352.519 kb on - strand, within RALBFv3_RS01560at 352.521 kb on - strand, within RALBFv3_RS01560at 352.572 kb on - strand, within RALBFv3_RS01560at 354.217 kb on - strandat 354.340 kb on + strandat 354.450 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted
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351,505 + RALBFv3_RS01555 0.56 +0.0
351,700 + RALBFv3_RS01555 0.71 +0.7
351,701 - RALBFv3_RS01555 0.71 -0.8
351,712 + RALBFv3_RS01555 0.72 -1.9
352,060 + +0.0
352,476 - RALBFv3_RS01560 0.12 -0.7
352,476 - RALBFv3_RS01560 0.12 -1.0
352,519 - RALBFv3_RS01560 0.14 +0.2
352,521 - RALBFv3_RS01560 0.14 +0.8
352,572 - RALBFv3_RS01560 0.17 +0.1
354,217 - -0.6
354,340 + -0.9
354,450 + -2.5

Or see this region's nucleotide sequence