Experiment: Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RALBFv3_RS00990 and RALBFv3_RS00995 are separated by 243 nucleotides RALBFv3_RS00995 and RALBFv3_RS01000 are separated by 59 nucleotides
RALBFv3_RS00990: RALBFv3_RS00990 - LacI family transcriptional regulator, at 219,098 to 220,204
_RS00990
RALBFv3_RS00995: RALBFv3_RS00995 - ergothioneine biosynthesis protein EgtB, at 220,448 to 221,761
_RS00995
RALBFv3_RS01000: RALBFv3_RS01000 - hypothetical protein, at 221,821 to 225,462
_RS01000
Position (kb) 220
221
222 Strain fitness (log2 ratio) -2
-1
0
1
2 at 219.765 kb on + strand, within RALBFv3_RS00990 at 219.777 kb on + strand, within RALBFv3_RS00990 at 219.778 kb on - strand, within RALBFv3_RS00990 at 220.132 kb on + strand at 220.334 kb on + strand at 220.335 kb on - strand at 220.348 kb on - strand at 220.357 kb on - strand at 220.455 kb on + strand at 220.456 kb on - strand at 220.464 kb on + strand at 220.508 kb on + strand at 220.709 kb on + strand, within RALBFv3_RS00995 at 220.710 kb on - strand, within RALBFv3_RS00995 at 220.712 kb on + strand, within RALBFv3_RS00995 at 220.712 kb on + strand, within RALBFv3_RS00995 at 221.364 kb on - strand, within RALBFv3_RS00995 at 221.364 kb on - strand, within RALBFv3_RS00995 at 221.574 kb on - strand, within RALBFv3_RS00995 at 221.694 kb on - strand at 221.751 kb on + strand at 221.752 kb on - strand at 221.822 kb on + strand at 222.119 kb on + strand at 222.167 kb on + strand at 222.167 kb on + strand at 222.167 kb on + strand at 222.167 kb on + strand at 222.167 kb on + strand at 222.168 kb on - strand at 222.168 kb on - strand at 222.170 kb on + strand at 222.171 kb on - strand at 222.351 kb on - strand, within RALBFv3_RS01000 at 222.354 kb on + strand, within RALBFv3_RS01000 at 222.426 kb on + strand, within RALBFv3_RS01000 at 222.426 kb on + strand, within RALBFv3_RS01000 at 222.427 kb on - strand, within RALBFv3_RS01000 at 222.427 kb on - strand, within RALBFv3_RS01000 at 222.427 kb on - strand, within RALBFv3_RS01000 at 222.427 kb on - strand, within RALBFv3_RS01000 at 222.428 kb on + strand, within RALBFv3_RS01000 at 222.428 kb on + strand, within RALBFv3_RS01000 at 222.428 kb on + strand, within RALBFv3_RS01000 at 222.428 kb on + strand, within RALBFv3_RS01000 at 222.428 kb on + strand, within RALBFv3_RS01000 at 222.429 kb on - strand, within RALBFv3_RS01000 at 222.429 kb on - strand, within RALBFv3_RS01000 at 222.429 kb on - strand, within RALBFv3_RS01000 at 222.463 kb on + strand, within RALBFv3_RS01000 at 222.463 kb on + strand, within RALBFv3_RS01000 at 222.463 kb on + strand, within RALBFv3_RS01000 at 222.464 kb on - strand, within RALBFv3_RS01000 at 222.549 kb on - strand, within RALBFv3_RS01000 at 222.743 kb on + strand, within RALBFv3_RS01000 at 222.744 kb on - strand, within RALBFv3_RS01000
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted remove 219,765 + RALBFv3_RS00990 0.60 +0.3 219,777 + RALBFv3_RS00990 0.61 -0.5 219,778 - RALBFv3_RS00990 0.61 +1.4 220,132 + -0.8 220,334 + -0.5 220,335 - +0.1 220,348 - +0.0 220,357 - +0.1 220,455 + -0.1 220,456 - -1.0 220,464 + +0.6 220,508 + +0.2 220,709 + RALBFv3_RS00995 0.20 -0.9 220,710 - RALBFv3_RS00995 0.20 -1.2 220,712 + RALBFv3_RS00995 0.20 +2.1 220,712 + RALBFv3_RS00995 0.20 +1.4 221,364 - RALBFv3_RS00995 0.70 -0.6 221,364 - RALBFv3_RS00995 0.70 -1.5 221,574 - RALBFv3_RS00995 0.86 +0.5 221,694 - +0.4 221,751 + +0.6 221,752 - -0.3 221,822 + -0.7 222,119 + +1.4 222,167 + -1.2 222,167 + -0.8 222,167 + +1.0 222,167 + +1.2 222,167 + +0.9 222,168 - -0.8 222,168 - -0.9 222,170 + +1.2 222,171 - -2.1 222,351 - RALBFv3_RS01000 0.15 -1.0 222,354 + RALBFv3_RS01000 0.15 -1.8 222,426 + RALBFv3_RS01000 0.17 +2.0 222,426 + RALBFv3_RS01000 0.17 -1.8 222,427 - RALBFv3_RS01000 0.17 -0.6 222,427 - RALBFv3_RS01000 0.17 +0.6 222,427 - RALBFv3_RS01000 0.17 -0.8 222,427 - RALBFv3_RS01000 0.17 -1.0 222,428 + RALBFv3_RS01000 0.17 -0.2 222,428 + RALBFv3_RS01000 0.17 +0.7 222,428 + RALBFv3_RS01000 0.17 +0.5 222,428 + RALBFv3_RS01000 0.17 -0.4 222,428 + RALBFv3_RS01000 0.17 +0.9 222,429 - RALBFv3_RS01000 0.17 -0.6 222,429 - RALBFv3_RS01000 0.17 +0.4 222,429 - RALBFv3_RS01000 0.17 -1.6 222,463 + RALBFv3_RS01000 0.18 -1.8 222,463 + RALBFv3_RS01000 0.18 +1.6 222,463 + RALBFv3_RS01000 0.18 -0.6 222,464 - RALBFv3_RS01000 0.18 -0.1 222,549 - RALBFv3_RS01000 0.20 -0.3 222,743 + RALBFv3_RS01000 0.25 +0.2 222,744 - RALBFv3_RS01000 0.25 -0.4
Or see this region's nucleotide sequence