Experiment: Formate McCas, 2.5g/L bicarb, 200 mM MOPs, 20 psi N2CO2, SO4 Vitamin & Casamino Acid FREE
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMJJ_RS03530 and MMJJ_RS03535 are separated by 133 nucleotides MMJJ_RS03535 and MMJJ_RS03540 are separated by 51 nucleotides MMJJ_RS03540 and MMJJ_RS03545 are separated by 0 nucleotides
MMJJ_RS03530: MMJJ_RS03530 - phosphate ABC transporter substrate-binding protein, at 661,134 to 661,961
_RS03530
MMJJ_RS03535: MMJJ_RS03535 - hypothetical protein, at 662,095 to 662,973
_RS03535
MMJJ_RS03540: MMJJ_RS03540 - TIGR00289 family protein, at 663,025 to 663,696
_RS03540
MMJJ_RS03545: MMJJ_RS03545 - flagella protein F, at 663,697 to 664,131
_RS03545
Position (kb) 662
663 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 661.115 kb on - strand at 661.239 kb on + strand, within MMJJ_RS03530 at 661.262 kb on + strand, within MMJJ_RS03530 at 661.265 kb on + strand, within MMJJ_RS03530 at 661.293 kb on - strand, within MMJJ_RS03530 at 661.293 kb on - strand, within MMJJ_RS03530 at 661.294 kb on + strand, within MMJJ_RS03530 at 661.295 kb on - strand, within MMJJ_RS03530 at 661.296 kb on + strand, within MMJJ_RS03530 at 661.296 kb on + strand, within MMJJ_RS03530 at 661.307 kb on - strand, within MMJJ_RS03530 at 661.308 kb on + strand, within MMJJ_RS03530 at 661.308 kb on + strand, within MMJJ_RS03530 at 661.310 kb on - strand, within MMJJ_RS03530 at 661.322 kb on + strand, within MMJJ_RS03530 at 661.356 kb on + strand, within MMJJ_RS03530 at 661.406 kb on + strand, within MMJJ_RS03530 at 661.429 kb on + strand, within MMJJ_RS03530 at 661.436 kb on - strand, within MMJJ_RS03530 at 661.440 kb on + strand, within MMJJ_RS03530 at 661.511 kb on - strand, within MMJJ_RS03530 at 661.512 kb on + strand, within MMJJ_RS03530 at 661.512 kb on + strand, within MMJJ_RS03530 at 661.534 kb on + strand, within MMJJ_RS03530 at 661.550 kb on - strand, within MMJJ_RS03530 at 661.580 kb on - strand, within MMJJ_RS03530 at 661.580 kb on - strand, within MMJJ_RS03530 at 661.580 kb on - strand, within MMJJ_RS03530 at 661.585 kb on - strand, within MMJJ_RS03530 at 661.585 kb on - strand, within MMJJ_RS03530 at 661.585 kb on - strand, within MMJJ_RS03530 at 661.585 kb on - strand, within MMJJ_RS03530 at 661.585 kb on - strand, within MMJJ_RS03530 at 661.586 kb on + strand, within MMJJ_RS03530 at 661.586 kb on + strand, within MMJJ_RS03530 at 661.586 kb on + strand, within MMJJ_RS03530 at 661.586 kb on + strand, within MMJJ_RS03530 at 661.586 kb on + strand, within MMJJ_RS03530 at 661.591 kb on - strand, within MMJJ_RS03530 at 661.591 kb on - strand, within MMJJ_RS03530 at 661.591 kb on - strand, within MMJJ_RS03530 at 661.591 kb on - strand, within MMJJ_RS03530 at 661.591 kb on - strand, within MMJJ_RS03530 at 661.592 kb on + strand, within MMJJ_RS03530 at 661.592 kb on + strand, within MMJJ_RS03530 at 661.592 kb on + strand, within MMJJ_RS03530 at 661.616 kb on - strand, within MMJJ_RS03530 at 661.617 kb on + strand, within MMJJ_RS03530 at 661.617 kb on + strand, within MMJJ_RS03530 at 661.625 kb on - strand, within MMJJ_RS03530 at 661.625 kb on - strand, within MMJJ_RS03530 at 661.738 kb on + strand, within MMJJ_RS03530 at 661.747 kb on - strand, within MMJJ_RS03530 at 661.772 kb on - strand, within MMJJ_RS03530 at 661.772 kb on - strand, within MMJJ_RS03530 at 661.777 kb on - strand, within MMJJ_RS03530 at 661.792 kb on - strand, within MMJJ_RS03530 at 661.792 kb on - strand, within MMJJ_RS03530 at 661.792 kb on - strand, within MMJJ_RS03530 at 661.814 kb on - strand, within MMJJ_RS03530 at 661.827 kb on - strand, within MMJJ_RS03530 at 661.828 kb on + strand, within MMJJ_RS03530 at 661.828 kb on + strand, within MMJJ_RS03530 at 661.829 kb on - strand, within MMJJ_RS03530 at 661.830 kb on + strand, within MMJJ_RS03530 at 661.830 kb on + strand, within MMJJ_RS03530 at 661.835 kb on + strand, within MMJJ_RS03530 at 661.856 kb on - strand, within MMJJ_RS03530 at 661.954 kb on - strand at 661.955 kb on + strand at 661.974 kb on - strand at 661.993 kb on - strand at 661.994 kb on + strand at 661.996 kb on - strand at 661.997 kb on + strand at 661.997 kb on + strand at 661.997 kb on + strand at 661.997 kb on + strand at 662.000 kb on - strand at 662.000 kb on - strand at 662.001 kb on + strand at 662.025 kb on - strand at 662.061 kb on + strand at 662.065 kb on - strand at 662.090 kb on + strand at 662.090 kb on + strand at 662.091 kb on - strand at 662.092 kb on + strand at 662.092 kb on + strand at 662.092 kb on + strand at 662.095 kb on + strand at 662.100 kb on - strand at 662.132 kb on - strand at 662.132 kb on - strand at 662.132 kb on - strand at 662.147 kb on - strand at 662.169 kb on - strand at 662.236 kb on - strand, within MMJJ_RS03535 at 662.236 kb on - strand, within MMJJ_RS03535 at 662.237 kb on + strand, within MMJJ_RS03535 at 662.238 kb on - strand, within MMJJ_RS03535 at 662.239 kb on + strand, within MMJJ_RS03535 at 662.239 kb on + strand, within MMJJ_RS03535 at 662.244 kb on - strand, within MMJJ_RS03535 at 662.244 kb on - strand, within MMJJ_RS03535 at 662.252 kb on + strand, within MMJJ_RS03535 at 662.318 kb on - strand, within MMJJ_RS03535 at 662.319 kb on + strand, within MMJJ_RS03535 at 662.319 kb on + strand, within MMJJ_RS03535 at 662.319 kb on + strand, within MMJJ_RS03535 at 662.323 kb on + strand, within MMJJ_RS03535 at 662.348 kb on - strand, within MMJJ_RS03535 at 662.348 kb on - strand, within MMJJ_RS03535 at 662.348 kb on - strand, within MMJJ_RS03535 at 662.348 kb on - strand, within MMJJ_RS03535 at 662.349 kb on + strand, within MMJJ_RS03535 at 662.349 kb on + strand, within MMJJ_RS03535 at 662.350 kb on - strand, within MMJJ_RS03535 at 662.350 kb on - strand, within MMJJ_RS03535 at 662.350 kb on - strand, within MMJJ_RS03535 at 662.350 kb on - strand, within MMJJ_RS03535 at 662.351 kb on + strand, within MMJJ_RS03535 at 662.351 kb on + strand, within MMJJ_RS03535 at 662.351 kb on + strand, within MMJJ_RS03535 at 662.359 kb on - strand, within MMJJ_RS03535 at 662.387 kb on + strand, within MMJJ_RS03535 at 662.428 kb on + strand, within MMJJ_RS03535 at 662.434 kb on + strand, within MMJJ_RS03535 at 662.551 kb on - strand, within MMJJ_RS03535 at 662.678 kb on - strand, within MMJJ_RS03535 at 662.711 kb on - strand, within MMJJ_RS03535 at 662.734 kb on - strand, within MMJJ_RS03535 at 662.769 kb on - strand, within MMJJ_RS03535 at 662.803 kb on + strand, within MMJJ_RS03535 at 662.855 kb on - strand, within MMJJ_RS03535 at 662.871 kb on + strand, within MMJJ_RS03535 at 662.893 kb on + strand at 662.909 kb on - strand at 662.909 kb on - strand at 662.910 kb on + strand at 662.911 kb on - strand at 662.911 kb on - strand at 662.931 kb on - strand at 662.934 kb on - strand at 662.952 kb on + strand at 662.972 kb on + strand at 662.976 kb on + strand at 662.979 kb on - strand at 662.979 kb on - strand at 663.043 kb on - strand at 663.109 kb on - strand, within MMJJ_RS03540 at 663.146 kb on + strand, within MMJJ_RS03540 at 663.146 kb on + strand, within MMJJ_RS03540 at 663.218 kb on - strand, within MMJJ_RS03540 at 663.320 kb on + strand, within MMJJ_RS03540 at 663.415 kb on + strand, within MMJJ_RS03540 at 663.518 kb on - strand, within MMJJ_RS03540 at 663.543 kb on - strand, within MMJJ_RS03540 at 663.582 kb on + strand, within MMJJ_RS03540 at 663.658 kb on - strand at 663.659 kb on + strand at 663.659 kb on + strand at 663.664 kb on + strand at 663.664 kb on + strand at 663.666 kb on + strand at 663.666 kb on + strand at 663.666 kb on + strand at 663.698 kb on - strand at 663.699 kb on + strand at 663.699 kb on + strand at 663.748 kb on - strand, within MMJJ_RS03545 at 663.748 kb on - strand, within MMJJ_RS03545 at 663.749 kb on + strand, within MMJJ_RS03545 at 663.749 kb on + strand, within MMJJ_RS03545 at 663.759 kb on - strand, within MMJJ_RS03545 at 663.782 kb on - strand, within MMJJ_RS03545 at 663.796 kb on + strand, within MMJJ_RS03545 at 663.797 kb on - strand, within MMJJ_RS03545 at 663.797 kb on - strand, within MMJJ_RS03545 at 663.798 kb on + strand, within MMJJ_RS03545 at 663.800 kb on + strand, within MMJJ_RS03545 at 663.800 kb on + strand, within MMJJ_RS03545 at 663.800 kb on + strand, within MMJJ_RS03545 at 663.800 kb on + strand, within MMJJ_RS03545 at 663.828 kb on + strand, within MMJJ_RS03545 at 663.903 kb on - strand, within MMJJ_RS03545 at 663.903 kb on - strand, within MMJJ_RS03545 at 663.903 kb on - strand, within MMJJ_RS03545 at 663.903 kb on - strand, within MMJJ_RS03545 at 663.904 kb on + strand, within MMJJ_RS03545 at 663.916 kb on - strand, within MMJJ_RS03545 at 663.916 kb on - strand, within MMJJ_RS03545 at 663.916 kb on - strand, within MMJJ_RS03545 at 663.917 kb on + strand, within MMJJ_RS03545 at 663.917 kb on + strand, within MMJJ_RS03545 at 663.917 kb on + strand, within MMJJ_RS03545 at 663.920 kb on + strand, within MMJJ_RS03545 at 663.925 kb on - strand, within MMJJ_RS03545 at 663.925 kb on - strand, within MMJJ_RS03545 at 663.926 kb on + strand, within MMJJ_RS03545 at 663.926 kb on + strand, within MMJJ_RS03545 at 663.926 kb on + strand, within MMJJ_RS03545 at 663.926 kb on + strand, within MMJJ_RS03545 at 663.926 kb on + strand, within MMJJ_RS03545 at 663.927 kb on - strand, within MMJJ_RS03545 at 663.928 kb on + strand, within MMJJ_RS03545
Per-strain Table
Position Strand Gene LocusTag Fraction Formate McCas, 2.5g/L bicarb, 200 mM MOPs, 20 psi N2CO2, SO4 Vitamin & Casamino Acid FREE remove 661,115 - -0.3 661,239 + MMJJ_RS03530 0.13 +0.4 661,262 + MMJJ_RS03530 0.15 -1.2 661,265 + MMJJ_RS03530 0.16 +2.3 661,293 - MMJJ_RS03530 0.19 -1.2 661,293 - MMJJ_RS03530 0.19 -0.8 661,294 + MMJJ_RS03530 0.19 +1.4 661,295 - MMJJ_RS03530 0.19 +0.5 661,296 + MMJJ_RS03530 0.20 +1.0 661,296 + MMJJ_RS03530 0.20 -1.6 661,307 - MMJJ_RS03530 0.21 +0.3 661,308 + MMJJ_RS03530 0.21 -2.5 661,308 + MMJJ_RS03530 0.21 +0.8 661,310 - MMJJ_RS03530 0.21 -0.7 661,322 + MMJJ_RS03530 0.23 +1.9 661,356 + MMJJ_RS03530 0.27 -0.4 661,406 + MMJJ_RS03530 0.33 +1.9 661,429 + MMJJ_RS03530 0.36 +1.5 661,436 - MMJJ_RS03530 0.36 +0.2 661,440 + MMJJ_RS03530 0.37 -1.6 661,511 - MMJJ_RS03530 0.46 +1.1 661,512 + MMJJ_RS03530 0.46 -0.2 661,512 + MMJJ_RS03530 0.46 +0.3 661,534 + MMJJ_RS03530 0.48 +2.2 661,550 - MMJJ_RS03530 0.50 -0.3 661,580 - MMJJ_RS03530 0.54 +2.1 661,580 - MMJJ_RS03530 0.54 +1.7 661,580 - MMJJ_RS03530 0.54 +1.8 661,585 - MMJJ_RS03530 0.54 -0.6 661,585 - MMJJ_RS03530 0.54 -0.1 661,585 - MMJJ_RS03530 0.54 +0.1 661,585 - MMJJ_RS03530 0.54 +0.9 661,585 - MMJJ_RS03530 0.54 +1.0 661,586 + MMJJ_RS03530 0.55 -0.9 661,586 + MMJJ_RS03530 0.55 -0.1 661,586 + MMJJ_RS03530 0.55 -0.9 661,586 + MMJJ_RS03530 0.55 +0.6 661,586 + MMJJ_RS03530 0.55 +1.7 661,591 - MMJJ_RS03530 0.55 +1.4 661,591 - MMJJ_RS03530 0.55 +1.6 661,591 - MMJJ_RS03530 0.55 +0.4 661,591 - MMJJ_RS03530 0.55 -1.1 661,591 - MMJJ_RS03530 0.55 +3.0 661,592 + MMJJ_RS03530 0.55 +0.0 661,592 + MMJJ_RS03530 0.55 +0.5 661,592 + MMJJ_RS03530 0.55 +1.5 661,616 - MMJJ_RS03530 0.58 +1.7 661,617 + MMJJ_RS03530 0.58 +0.5 661,617 + MMJJ_RS03530 0.58 +0.4 661,625 - MMJJ_RS03530 0.59 -1.2 661,625 - MMJJ_RS03530 0.59 +1.0 661,738 + MMJJ_RS03530 0.73 +0.9 661,747 - MMJJ_RS03530 0.74 -0.3 661,772 - MMJJ_RS03530 0.77 -1.0 661,772 - MMJJ_RS03530 0.77 +0.1 661,777 - MMJJ_RS03530 0.78 +1.6 661,792 - MMJJ_RS03530 0.79 -1.6 661,792 - MMJJ_RS03530 0.79 +0.7 661,792 - MMJJ_RS03530 0.79 +0.6 661,814 - MMJJ_RS03530 0.82 -0.3 661,827 - MMJJ_RS03530 0.84 +1.1 661,828 + MMJJ_RS03530 0.84 -0.6 661,828 + MMJJ_RS03530 0.84 -1.0 661,829 - MMJJ_RS03530 0.84 +1.0 661,830 + MMJJ_RS03530 0.84 -0.1 661,830 + MMJJ_RS03530 0.84 +0.5 661,835 + MMJJ_RS03530 0.85 -0.3 661,856 - MMJJ_RS03530 0.87 -0.4 661,954 - -1.4 661,955 + -0.2 661,974 - -0.1 661,993 - -0.3 661,994 + -0.5 661,996 - +0.8 661,997 + +0.5 661,997 + -0.1 661,997 + +1.0 661,997 + -0.3 662,000 - +0.5 662,000 - -2.0 662,001 + +0.8 662,025 - +1.0 662,061 + -0.2 662,065 - +2.2 662,090 + -0.4 662,090 + -0.1 662,091 - -0.6 662,092 + -1.1 662,092 + -0.1 662,092 + +0.3 662,095 + -2.0 662,100 - +0.8 662,132 - +1.1 662,132 - +0.8 662,132 - +0.0 662,147 - +0.6 662,169 - -0.8 662,236 - MMJJ_RS03535 0.16 -0.6 662,236 - MMJJ_RS03535 0.16 -0.5 662,237 + MMJJ_RS03535 0.16 -0.5 662,238 - MMJJ_RS03535 0.16 +0.1 662,239 + MMJJ_RS03535 0.16 -1.1 662,239 + MMJJ_RS03535 0.16 -1.1 662,244 - MMJJ_RS03535 0.17 -1.1 662,244 - MMJJ_RS03535 0.17 +0.4 662,252 + MMJJ_RS03535 0.18 +0.9 662,318 - MMJJ_RS03535 0.25 -0.5 662,319 + MMJJ_RS03535 0.25 -1.3 662,319 + MMJJ_RS03535 0.25 -0.5 662,319 + MMJJ_RS03535 0.25 -1.4 662,323 + MMJJ_RS03535 0.26 -1.4 662,348 - MMJJ_RS03535 0.29 -1.4 662,348 - MMJJ_RS03535 0.29 +0.4 662,348 - MMJJ_RS03535 0.29 -1.1 662,348 - MMJJ_RS03535 0.29 -1.5 662,349 + MMJJ_RS03535 0.29 -0.8 662,349 + MMJJ_RS03535 0.29 -0.2 662,350 - MMJJ_RS03535 0.29 -4.7 662,350 - MMJJ_RS03535 0.29 -0.9 662,350 - MMJJ_RS03535 0.29 +1.2 662,350 - MMJJ_RS03535 0.29 -1.4 662,351 + MMJJ_RS03535 0.29 +1.0 662,351 + MMJJ_RS03535 0.29 +0.4 662,351 + MMJJ_RS03535 0.29 -0.6 662,359 - MMJJ_RS03535 0.30 +0.6 662,387 + MMJJ_RS03535 0.33 +0.1 662,428 + MMJJ_RS03535 0.38 -1.0 662,434 + MMJJ_RS03535 0.39 +0.2 662,551 - MMJJ_RS03535 0.52 -1.2 662,678 - MMJJ_RS03535 0.66 -0.5 662,711 - MMJJ_RS03535 0.70 -0.8 662,734 - MMJJ_RS03535 0.73 -0.9 662,769 - MMJJ_RS03535 0.77 -0.6 662,803 + MMJJ_RS03535 0.81 +0.0 662,855 - MMJJ_RS03535 0.86 -0.3 662,871 + MMJJ_RS03535 0.88 +0.4 662,893 + -2.1 662,909 - +0.5 662,909 - +1.9 662,910 + +0.8 662,911 - +0.3 662,911 - +2.0 662,931 - +0.1 662,934 - +0.1 662,952 + +0.1 662,972 + +0.2 662,976 + +0.4 662,979 - +0.7 662,979 - -0.6 663,043 - +0.3 663,109 - MMJJ_RS03540 0.12 -0.0 663,146 + MMJJ_RS03540 0.18 +2.3 663,146 + MMJJ_RS03540 0.18 -0.6 663,218 - MMJJ_RS03540 0.29 +0.3 663,320 + MMJJ_RS03540 0.44 +0.5 663,415 + MMJJ_RS03540 0.58 -1.2 663,518 - MMJJ_RS03540 0.73 +1.4 663,543 - MMJJ_RS03540 0.77 +1.4 663,582 + MMJJ_RS03540 0.83 -0.3 663,658 - +0.5 663,659 + -0.4 663,659 + +0.0 663,664 + +1.7 663,664 + +1.0 663,666 + +0.1 663,666 + -0.7 663,666 + +0.5 663,698 - -0.3 663,699 + -1.0 663,699 + -3.6 663,748 - MMJJ_RS03545 0.12 +0.2 663,748 - MMJJ_RS03545 0.12 -1.1 663,749 + MMJJ_RS03545 0.12 +0.7 663,749 + MMJJ_RS03545 0.12 -0.7 663,759 - MMJJ_RS03545 0.14 +2.0 663,782 - MMJJ_RS03545 0.20 +1.6 663,796 + MMJJ_RS03545 0.23 -0.3 663,797 - MMJJ_RS03545 0.23 -0.3 663,797 - MMJJ_RS03545 0.23 +0.1 663,798 + MMJJ_RS03545 0.23 -1.4 663,800 + MMJJ_RS03545 0.24 +0.5 663,800 + MMJJ_RS03545 0.24 -0.6 663,800 + MMJJ_RS03545 0.24 -0.3 663,800 + MMJJ_RS03545 0.24 -0.5 663,828 + MMJJ_RS03545 0.30 +0.6 663,903 - MMJJ_RS03545 0.47 -0.1 663,903 - MMJJ_RS03545 0.47 +0.6 663,903 - MMJJ_RS03545 0.47 +0.5 663,903 - MMJJ_RS03545 0.47 +0.6 663,904 + MMJJ_RS03545 0.48 -0.7 663,916 - MMJJ_RS03545 0.50 +1.4 663,916 - MMJJ_RS03545 0.50 +1.0 663,916 - MMJJ_RS03545 0.50 +2.1 663,917 + MMJJ_RS03545 0.51 -2.1 663,917 + MMJJ_RS03545 0.51 -1.3 663,917 + MMJJ_RS03545 0.51 +0.8 663,920 + MMJJ_RS03545 0.51 +1.3 663,925 - MMJJ_RS03545 0.52 -1.7 663,925 - MMJJ_RS03545 0.52 -0.8 663,926 + MMJJ_RS03545 0.53 +0.8 663,926 + MMJJ_RS03545 0.53 -0.5 663,926 + MMJJ_RS03545 0.53 -0.6 663,926 + MMJJ_RS03545 0.53 +1.4 663,926 + MMJJ_RS03545 0.53 -0.3 663,927 - MMJJ_RS03545 0.53 -1.2 663,928 + MMJJ_RS03545 0.53 +0.6
Or see this region's nucleotide sequence