Strain Fitness in Rahnella sp. WP5 around EX31_RS25320

Experiment: L-Serine (N); RCH2 media; shaking

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS10755 and EX31_RS25320 are separated by 6 nucleotidesEX31_RS25320 and EX31_RS10760 are separated by 407 nucleotides EX31_RS10755: EX31_RS10755 - glycoside hydrolase family 3 protein, at 66,089 to 68,050 _RS10755 EX31_RS25320: EX31_RS25320 - methyltransferase, at 68,057 to 68,236 _RS25320 EX31_RS10760: EX31_RS10760 - TonB-dependent siderophore receptor, at 68,644 to 70,755 _RS10760 Position (kb) 68 69Strain fitness (log2 ratio) -2 -1 0 1 2at 67.134 kb on - strand, within EX31_RS10755at 67.528 kb on - strand, within EX31_RS10755at 67.554 kb on + strand, within EX31_RS10755at 67.586 kb on + strand, within EX31_RS10755at 67.587 kb on - strand, within EX31_RS10755at 67.593 kb on + strand, within EX31_RS10755at 67.593 kb on + strand, within EX31_RS10755at 67.593 kb on + strand, within EX31_RS10755at 67.593 kb on + strand, within EX31_RS10755at 67.928 kb on + strandat 67.928 kb on + strandat 67.928 kb on + strandat 68.196 kb on + strand, within EX31_RS25320at 68.230 kb on + strandat 68.231 kb on - strandat 68.231 kb on - strandat 68.280 kb on + strandat 68.286 kb on + strandat 68.422 kb on + strandat 68.583 kb on + strandat 68.584 kb on - strandat 68.584 kb on - strandat 68.586 kb on + strandat 68.586 kb on + strandat 68.586 kb on + strandat 68.586 kb on + strandat 68.587 kb on - strandat 68.601 kb on + strandat 68.601 kb on + strandat 68.601 kb on + strandat 68.624 kb on + strandat 68.624 kb on + strandat 68.624 kb on + strandat 68.624 kb on + strandat 68.625 kb on - strandat 68.628 kb on + strandat 68.629 kb on - strandat 68.630 kb on + strandat 68.637 kb on + strandat 68.643 kb on + strandat 68.644 kb on - strandat 68.912 kb on - strand, within EX31_RS10760at 69.047 kb on - strand, within EX31_RS10760at 69.084 kb on + strand, within EX31_RS10760at 69.085 kb on - strand, within EX31_RS10760

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (N); RCH2 media; shaking
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67,134 - EX31_RS10755 0.53 -2.2
67,528 - EX31_RS10755 0.73 -1.6
67,554 + EX31_RS10755 0.75 +0.7
67,586 + EX31_RS10755 0.76 -0.8
67,587 - EX31_RS10755 0.76 +0.1
67,593 + EX31_RS10755 0.77 +0.7
67,593 + EX31_RS10755 0.77 +1.0
67,593 + EX31_RS10755 0.77 +0.9
67,593 + EX31_RS10755 0.77 +1.2
67,928 + +0.6
67,928 + +1.3
67,928 + +1.7
68,196 + EX31_RS25320 0.77 +0.3
68,230 + -0.2
68,231 - +0.6
68,231 - -0.2
68,280 + +0.3
68,286 + +0.7
68,422 + +2.1
68,583 + +0.4
68,584 - +2.7
68,584 - +0.3
68,586 + -1.2
68,586 + +0.9
68,586 + +0.8
68,586 + +0.8
68,587 - +2.0
68,601 + +0.8
68,601 + -0.7
68,601 + +1.1
68,624 + +0.5
68,624 + +0.9
68,624 + -0.2
68,624 + +0.7
68,625 - -0.9
68,628 + -0.1
68,629 - +0.7
68,630 + -1.2
68,637 + -2.0
68,643 + -0.9
68,644 - -0.6
68,912 - EX31_RS10760 0.13 -0.9
69,047 - EX31_RS10760 0.19 +1.1
69,084 + EX31_RS10760 0.21 -0.3
69,085 - EX31_RS10760 0.21 +1.7

Or see this region's nucleotide sequence