Experiment: L-Serine (N); RCH2 media; shaking
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS10755 and EX31_RS25320 are separated by 6 nucleotides EX31_RS25320 and EX31_RS10760 are separated by 407 nucleotides
EX31_RS10755: EX31_RS10755 - glycoside hydrolase family 3 protein, at 66,089 to 68,050
_RS10755
EX31_RS25320: EX31_RS25320 - methyltransferase, at 68,057 to 68,236
_RS25320
EX31_RS10760: EX31_RS10760 - TonB-dependent siderophore receptor, at 68,644 to 70,755
_RS10760
Position (kb)
68
69 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 67.134 kb on - strand, within EX31_RS10755 at 67.528 kb on - strand, within EX31_RS10755 at 67.554 kb on + strand, within EX31_RS10755 at 67.586 kb on + strand, within EX31_RS10755 at 67.587 kb on - strand, within EX31_RS10755 at 67.593 kb on + strand, within EX31_RS10755 at 67.593 kb on + strand, within EX31_RS10755 at 67.593 kb on + strand, within EX31_RS10755 at 67.593 kb on + strand, within EX31_RS10755 at 67.928 kb on + strand at 67.928 kb on + strand at 67.928 kb on + strand at 68.196 kb on + strand, within EX31_RS25320 at 68.230 kb on + strand at 68.231 kb on - strand at 68.231 kb on - strand at 68.280 kb on + strand at 68.286 kb on + strand at 68.422 kb on + strand at 68.583 kb on + strand at 68.584 kb on - strand at 68.584 kb on - strand at 68.586 kb on + strand at 68.586 kb on + strand at 68.586 kb on + strand at 68.586 kb on + strand at 68.587 kb on - strand at 68.601 kb on + strand at 68.601 kb on + strand at 68.601 kb on + strand at 68.624 kb on + strand at 68.624 kb on + strand at 68.624 kb on + strand at 68.624 kb on + strand at 68.625 kb on - strand at 68.628 kb on + strand at 68.629 kb on - strand at 68.630 kb on + strand at 68.637 kb on + strand at 68.643 kb on + strand at 68.644 kb on - strand at 68.912 kb on - strand, within EX31_RS10760 at 69.047 kb on - strand, within EX31_RS10760 at 69.084 kb on + strand, within EX31_RS10760 at 69.085 kb on - strand, within EX31_RS10760
Per-strain Table
Position Strand Gene LocusTag Fraction L-Serine (N); RCH2 media; shaking remove 67,134 - EX31_RS10755 0.53 -2.2 67,528 - EX31_RS10755 0.73 -1.6 67,554 + EX31_RS10755 0.75 +0.7 67,586 + EX31_RS10755 0.76 -0.8 67,587 - EX31_RS10755 0.76 +0.1 67,593 + EX31_RS10755 0.77 +0.7 67,593 + EX31_RS10755 0.77 +1.0 67,593 + EX31_RS10755 0.77 +0.9 67,593 + EX31_RS10755 0.77 +1.2 67,928 + +0.6 67,928 + +1.3 67,928 + +1.7 68,196 + EX31_RS25320 0.77 +0.3 68,230 + -0.2 68,231 - +0.6 68,231 - -0.2 68,280 + +0.3 68,286 + +0.7 68,422 + +2.1 68,583 + +0.4 68,584 - +2.7 68,584 - +0.3 68,586 + -1.2 68,586 + +0.9 68,586 + +0.8 68,586 + +0.8 68,587 - +2.0 68,601 + +0.8 68,601 + -0.7 68,601 + +1.1 68,624 + +0.5 68,624 + +0.9 68,624 + -0.2 68,624 + +0.7 68,625 - -0.9 68,628 + -0.1 68,629 - +0.7 68,630 + -1.2 68,637 + -2.0 68,643 + -0.9 68,644 - -0.6 68,912 - EX31_RS10760 0.13 -0.9 69,047 - EX31_RS10760 0.19 +1.1 69,084 + EX31_RS10760 0.21 -0.3 69,085 - EX31_RS10760 0.21 +1.7
Or see this region's nucleotide sequence