Strain Fitness in Rahnella sp. WP5 around EX31_RS22100

Experiment: L-Serine (N); RCH2 media; shaking

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS22095 and EX31_RS22100 are separated by 161 nucleotidesEX31_RS22100 and EX31_RS22105 are separated by 27 nucleotides EX31_RS22095: EX31_RS22095 - tRNA guanosine(34) transglycosylase Tgt, at 167,836 to 168,960 _RS22095 EX31_RS22100: EX31_RS22100 - preprotein translocase subunit YajC, at 169,122 to 169,454 _RS22100 EX31_RS22105: EX31_RS22105 - protein translocase subunit SecD, at 169,482 to 171,329 _RS22105 Position (kb) 169 170Strain fitness (log2 ratio) -2 -1 0 1 2at 168.201 kb on + strand, within EX31_RS22095at 168.202 kb on - strand, within EX31_RS22095at 168.251 kb on + strand, within EX31_RS22095at 168.270 kb on + strand, within EX31_RS22095at 168.270 kb on + strand, within EX31_RS22095at 168.270 kb on + strand, within EX31_RS22095at 168.366 kb on + strand, within EX31_RS22095at 168.369 kb on + strand, within EX31_RS22095at 168.369 kb on + strand, within EX31_RS22095at 168.369 kb on + strand, within EX31_RS22095at 168.390 kb on + strand, within EX31_RS22095at 168.391 kb on - strand, within EX31_RS22095at 168.407 kb on - strand, within EX31_RS22095at 168.425 kb on + strand, within EX31_RS22095at 168.425 kb on + strand, within EX31_RS22095at 168.425 kb on + strand, within EX31_RS22095at 168.425 kb on + strand, within EX31_RS22095at 168.425 kb on + strand, within EX31_RS22095at 168.425 kb on + strand, within EX31_RS22095at 168.425 kb on + strand, within EX31_RS22095at 168.425 kb on + strand, within EX31_RS22095at 168.431 kb on + strand, within EX31_RS22095at 168.447 kb on + strand, within EX31_RS22095at 168.463 kb on + strand, within EX31_RS22095at 168.513 kb on + strand, within EX31_RS22095at 168.618 kb on + strand, within EX31_RS22095at 168.618 kb on + strand, within EX31_RS22095at 168.618 kb on + strand, within EX31_RS22095at 168.618 kb on + strand, within EX31_RS22095at 168.708 kb on + strand, within EX31_RS22095at 168.708 kb on + strand, within EX31_RS22095at 168.709 kb on - strand, within EX31_RS22095at 168.717 kb on + strand, within EX31_RS22095at 168.717 kb on + strand, within EX31_RS22095at 168.748 kb on + strand, within EX31_RS22095at 168.748 kb on + strand, within EX31_RS22095at 168.748 kb on + strand, within EX31_RS22095at 168.748 kb on + strand, within EX31_RS22095at 168.763 kb on + strand, within EX31_RS22095at 168.763 kb on + strand, within EX31_RS22095at 168.763 kb on + strand, within EX31_RS22095at 168.763 kb on + strand, within EX31_RS22095at 168.765 kb on + strand, within EX31_RS22095at 168.775 kb on + strand, within EX31_RS22095at 168.775 kb on + strand, within EX31_RS22095at 168.847 kb on + strand, within EX31_RS22095at 168.847 kb on + strand, within EX31_RS22095at 168.896 kb on + strandat 168.896 kb on + strandat 168.896 kb on + strandat 168.896 kb on + strandat 168.919 kb on + strandat 168.919 kb on + strandat 168.927 kb on + strandat 168.927 kb on + strandat 169.005 kb on + strandat 169.024 kb on + strandat 169.024 kb on + strandat 169.182 kb on + strand, within EX31_RS22100at 169.452 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (N); RCH2 media; shaking
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168,201 + EX31_RS22095 0.32 -0.5
168,202 - EX31_RS22095 0.33 +1.3
168,251 + EX31_RS22095 0.37 -0.0
168,270 + EX31_RS22095 0.39 +0.4
168,270 + EX31_RS22095 0.39 +0.1
168,270 + EX31_RS22095 0.39 +0.3
168,366 + EX31_RS22095 0.47 +0.8
168,369 + EX31_RS22095 0.47 -1.8
168,369 + EX31_RS22095 0.47 +0.6
168,369 + EX31_RS22095 0.47 -0.3
168,390 + EX31_RS22095 0.49 +0.4
168,391 - EX31_RS22095 0.49 +1.8
168,407 - EX31_RS22095 0.51 +1.3
168,425 + EX31_RS22095 0.52 +0.2
168,425 + EX31_RS22095 0.52 +0.4
168,425 + EX31_RS22095 0.52 +0.2
168,425 + EX31_RS22095 0.52 +0.2
168,425 + EX31_RS22095 0.52 +0.1
168,425 + EX31_RS22095 0.52 +0.9
168,425 + EX31_RS22095 0.52 +1.5
168,425 + EX31_RS22095 0.52 +1.5
168,431 + EX31_RS22095 0.53 -0.1
168,447 + EX31_RS22095 0.54 -0.2
168,463 + EX31_RS22095 0.56 -1.6
168,513 + EX31_RS22095 0.60 +0.8
168,618 + EX31_RS22095 0.70 +0.3
168,618 + EX31_RS22095 0.70 -0.7
168,618 + EX31_RS22095 0.70 -0.3
168,618 + EX31_RS22095 0.70 -0.5
168,708 + EX31_RS22095 0.78 -0.6
168,708 + EX31_RS22095 0.78 -1.5
168,709 - EX31_RS22095 0.78 +2.4
168,717 + EX31_RS22095 0.78 +0.9
168,717 + EX31_RS22095 0.78 -0.2
168,748 + EX31_RS22095 0.81 +0.7
168,748 + EX31_RS22095 0.81 +0.6
168,748 + EX31_RS22095 0.81 -0.4
168,748 + EX31_RS22095 0.81 -1.5
168,763 + EX31_RS22095 0.82 -0.8
168,763 + EX31_RS22095 0.82 +0.8
168,763 + EX31_RS22095 0.82 -0.4
168,763 + EX31_RS22095 0.82 +1.1
168,765 + EX31_RS22095 0.83 -0.3
168,775 + EX31_RS22095 0.83 -0.7
168,775 + EX31_RS22095 0.83 -0.8
168,847 + EX31_RS22095 0.90 +0.0
168,847 + EX31_RS22095 0.90 -0.2
168,896 + +1.5
168,896 + -0.5
168,896 + +0.2
168,896 + -0.4
168,919 + +0.2
168,919 + +2.1
168,927 + +0.1
168,927 + +0.2
169,005 + -1.3
169,024 + +0.4
169,024 + +0.7
169,182 + EX31_RS22100 0.18 -1.2
169,452 + -0.2

Or see this region's nucleotide sequence