Strain Fitness in Rahnella sp. WP5 around EX31_RS20190

Experiment: L-Serine (N); RCH2 media; shaking

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS20185 and EX31_RS20190 are separated by 48 nucleotidesEX31_RS20190 and EX31_RS20195 are separated by 56 nucleotides EX31_RS20185: EX31_RS20185 - phosphoenolpyruvate-protein phosphotransferase PtsI, at 665,114 to 666,841 _RS20185 EX31_RS20190: EX31_RS20190 - PTS glucose transporter subunit IIA, at 666,890 to 667,399 _RS20190 EX31_RS20195: EX31_RS20195 - HAMP domain-containing protein, at 667,456 to 668,805 _RS20195 Position (kb) 666 667 668Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 666.062 kb on + strand, within EX31_RS20185at 666.062 kb on + strand, within EX31_RS20185at 666.064 kb on + strand, within EX31_RS20185at 666.105 kb on + strand, within EX31_RS20185at 666.105 kb on + strand, within EX31_RS20185at 666.143 kb on + strand, within EX31_RS20185at 666.143 kb on + strand, within EX31_RS20185at 666.144 kb on - strand, within EX31_RS20185at 666.196 kb on + strand, within EX31_RS20185at 666.490 kb on + strand, within EX31_RS20185at 666.490 kb on + strand, within EX31_RS20185at 666.490 kb on + strand, within EX31_RS20185at 666.491 kb on - strand, within EX31_RS20185at 666.533 kb on + strand, within EX31_RS20185at 666.533 kb on + strand, within EX31_RS20185at 666.555 kb on + strand, within EX31_RS20185at 666.568 kb on + strand, within EX31_RS20185at 666.568 kb on + strand, within EX31_RS20185at 666.578 kb on - strand, within EX31_RS20185at 666.646 kb on + strand, within EX31_RS20185at 666.646 kb on + strand, within EX31_RS20185at 666.646 kb on + strand, within EX31_RS20185at 666.657 kb on + strand, within EX31_RS20185at 666.672 kb on + strandat 666.694 kb on + strandat 666.694 kb on + strandat 666.781 kb on + strandat 666.839 kb on + strandat 666.856 kb on + strandat 666.856 kb on + strandat 666.871 kb on + strandat 666.878 kb on + strandat 666.949 kb on + strand, within EX31_RS20190at 667.045 kb on + strand, within EX31_RS20190at 667.046 kb on - strand, within EX31_RS20190at 667.315 kb on + strand, within EX31_RS20190at 667.354 kb on + strandat 667.397 kb on + strandat 667.397 kb on + strandat 667.397 kb on + strandat 667.397 kb on + strandat 667.416 kb on + strandat 667.416 kb on + strandat 667.416 kb on + strandat 667.522 kb on + strandat 667.522 kb on + strandat 667.523 kb on - strandat 667.523 kb on - strandat 667.523 kb on - strandat 667.523 kb on - strandat 667.523 kb on - strandat 667.523 kb on - strandat 667.627 kb on - strand, within EX31_RS20195at 667.639 kb on - strand, within EX31_RS20195at 667.639 kb on - strand, within EX31_RS20195at 667.639 kb on - strand, within EX31_RS20195at 667.639 kb on - strand, within EX31_RS20195at 667.639 kb on - strand, within EX31_RS20195at 667.686 kb on - strand, within EX31_RS20195at 667.686 kb on - strand, within EX31_RS20195at 667.686 kb on - strand, within EX31_RS20195at 667.686 kb on - strand, within EX31_RS20195at 667.686 kb on - strand, within EX31_RS20195at 667.716 kb on + strand, within EX31_RS20195at 667.717 kb on - strand, within EX31_RS20195at 667.717 kb on - strand, within EX31_RS20195at 667.717 kb on - strand, within EX31_RS20195at 667.717 kb on - strand, within EX31_RS20195at 667.717 kb on - strand, within EX31_RS20195at 667.717 kb on - strand, within EX31_RS20195at 667.749 kb on + strand, within EX31_RS20195at 667.749 kb on + strand, within EX31_RS20195at 667.750 kb on - strand, within EX31_RS20195at 667.791 kb on + strand, within EX31_RS20195at 667.792 kb on - strand, within EX31_RS20195at 667.805 kb on + strand, within EX31_RS20195at 667.806 kb on - strand, within EX31_RS20195at 667.806 kb on - strand, within EX31_RS20195at 667.812 kb on + strand, within EX31_RS20195at 667.812 kb on + strand, within EX31_RS20195at 667.812 kb on + strand, within EX31_RS20195at 667.813 kb on - strand, within EX31_RS20195at 667.813 kb on - strand, within EX31_RS20195at 667.916 kb on + strand, within EX31_RS20195at 667.948 kb on - strand, within EX31_RS20195at 668.005 kb on + strand, within EX31_RS20195at 668.006 kb on - strand, within EX31_RS20195at 668.006 kb on - strand, within EX31_RS20195at 668.006 kb on - strand, within EX31_RS20195at 668.006 kb on - strand, within EX31_RS20195at 668.006 kb on - strand, within EX31_RS20195at 668.006 kb on - strand, within EX31_RS20195at 668.006 kb on - strand, within EX31_RS20195at 668.158 kb on - strand, within EX31_RS20195at 668.158 kb on - strand, within EX31_RS20195at 668.158 kb on - strand, within EX31_RS20195at 668.158 kb on - strand, within EX31_RS20195at 668.158 kb on - strand, within EX31_RS20195at 668.214 kb on + strand, within EX31_RS20195at 668.231 kb on - strand, within EX31_RS20195at 668.263 kb on - strand, within EX31_RS20195at 668.263 kb on - strand, within EX31_RS20195at 668.302 kb on + strand, within EX31_RS20195at 668.303 kb on - strand, within EX31_RS20195at 668.318 kb on - strand, within EX31_RS20195at 668.359 kb on - strand, within EX31_RS20195at 668.391 kb on - strand, within EX31_RS20195

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (N); RCH2 media; shaking
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666,062 + EX31_RS20185 0.55 +0.6
666,062 + EX31_RS20185 0.55 +0.4
666,064 + EX31_RS20185 0.55 -1.2
666,105 + EX31_RS20185 0.57 +0.5
666,105 + EX31_RS20185 0.57 +1.3
666,143 + EX31_RS20185 0.60 +0.9
666,143 + EX31_RS20185 0.60 -0.2
666,144 - EX31_RS20185 0.60 +1.7
666,196 + EX31_RS20185 0.63 +0.2
666,490 + EX31_RS20185 0.80 -0.6
666,490 + EX31_RS20185 0.80 -1.9
666,490 + EX31_RS20185 0.80 +1.0
666,491 - EX31_RS20185 0.80 -0.8
666,533 + EX31_RS20185 0.82 +0.7
666,533 + EX31_RS20185 0.82 +0.3
666,555 + EX31_RS20185 0.83 +0.2
666,568 + EX31_RS20185 0.84 +2.2
666,568 + EX31_RS20185 0.84 +1.3
666,578 - EX31_RS20185 0.85 +1.0
666,646 + EX31_RS20185 0.89 +0.7
666,646 + EX31_RS20185 0.89 +0.3
666,646 + EX31_RS20185 0.89 -0.8
666,657 + EX31_RS20185 0.89 -0.4
666,672 + -0.8
666,694 + -0.2
666,694 + +0.5
666,781 + +0.7
666,839 + -0.2
666,856 + -0.0
666,856 + -0.4
666,871 + -0.2
666,878 + -0.8
666,949 + EX31_RS20190 0.12 -0.2
667,045 + EX31_RS20190 0.30 +0.6
667,046 - EX31_RS20190 0.31 -0.8
667,315 + EX31_RS20190 0.83 +0.0
667,354 + +1.7
667,397 + +0.1
667,397 + +0.6
667,397 + -0.1
667,397 + +0.4
667,416 + +1.4
667,416 + -0.8
667,416 + +1.0
667,522 + -0.1
667,522 + +1.4
667,523 - -1.5
667,523 - +0.2
667,523 - -1.1
667,523 - -0.0
667,523 - -0.5
667,523 - -0.4
667,627 - EX31_RS20195 0.13 +1.2
667,639 - EX31_RS20195 0.14 +0.3
667,639 - EX31_RS20195 0.14 +0.4
667,639 - EX31_RS20195 0.14 +0.8
667,639 - EX31_RS20195 0.14 -0.3
667,639 - EX31_RS20195 0.14 +0.9
667,686 - EX31_RS20195 0.17 -1.6
667,686 - EX31_RS20195 0.17 +0.3
667,686 - EX31_RS20195 0.17 +0.9
667,686 - EX31_RS20195 0.17 -0.1
667,686 - EX31_RS20195 0.17 -0.7
667,716 + EX31_RS20195 0.19 +1.3
667,717 - EX31_RS20195 0.19 -0.2
667,717 - EX31_RS20195 0.19 -0.3
667,717 - EX31_RS20195 0.19 +0.6
667,717 - EX31_RS20195 0.19 -0.4
667,717 - EX31_RS20195 0.19 +1.1
667,717 - EX31_RS20195 0.19 -0.2
667,749 + EX31_RS20195 0.22 +0.4
667,749 + EX31_RS20195 0.22 +0.4
667,750 - EX31_RS20195 0.22 -0.6
667,791 + EX31_RS20195 0.25 +0.6
667,792 - EX31_RS20195 0.25 -0.0
667,805 + EX31_RS20195 0.26 +1.4
667,806 - EX31_RS20195 0.26 +1.0
667,806 - EX31_RS20195 0.26 -0.4
667,812 + EX31_RS20195 0.26 -0.2
667,812 + EX31_RS20195 0.26 -3.1
667,812 + EX31_RS20195 0.26 -0.2
667,813 - EX31_RS20195 0.26 -0.2
667,813 - EX31_RS20195 0.26 +0.9
667,916 + EX31_RS20195 0.34 -2.2
667,948 - EX31_RS20195 0.36 -0.9
668,005 + EX31_RS20195 0.41 +0.4
668,006 - EX31_RS20195 0.41 +1.5
668,006 - EX31_RS20195 0.41 +1.0
668,006 - EX31_RS20195 0.41 -1.0
668,006 - EX31_RS20195 0.41 -0.3
668,006 - EX31_RS20195 0.41 +1.8
668,006 - EX31_RS20195 0.41 +0.9
668,006 - EX31_RS20195 0.41 +0.6
668,158 - EX31_RS20195 0.52 +0.1
668,158 - EX31_RS20195 0.52 +1.4
668,158 - EX31_RS20195 0.52 +1.0
668,158 - EX31_RS20195 0.52 +0.1
668,158 - EX31_RS20195 0.52 +0.5
668,214 + EX31_RS20195 0.56 +2.2
668,231 - EX31_RS20195 0.57 -0.4
668,263 - EX31_RS20195 0.60 -0.2
668,263 - EX31_RS20195 0.60 -0.2
668,302 + EX31_RS20195 0.63 +1.8
668,303 - EX31_RS20195 0.63 +0.8
668,318 - EX31_RS20195 0.64 +1.9
668,359 - EX31_RS20195 0.67 +0.2
668,391 - EX31_RS20195 0.69 -0.2

Or see this region's nucleotide sequence