Strain Fitness in Rahnella sp. WP5 around EX31_RS19590

Experiment: L-Serine (N); RCH2 media; shaking

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS19585 and EX31_RS19590 are separated by 188 nucleotidesEX31_RS19590 and EX31_RS19595 are separated by 262 nucleotidesEX31_RS19595 and EX31_RS19600 are separated by 59 nucleotides EX31_RS19585: EX31_RS19585 - bifunctional tetrahydrofolate synthase/dihydrofolate synthase, at 548,024 to 549,310 _RS19585 EX31_RS19590: EX31_RS19590 - acetyl-CoA carboxylase, carboxyltransferase subunit beta, at 549,499 to 550,413 _RS19590 EX31_RS19595: EX31_RS19595 - DedA family protein, at 550,676 to 551,344 _RS19595 EX31_RS19600: EX31_RS19600 - tRNA pseudouridine(38-40) synthase TruA, at 551,404 to 552,234 _RS19600 Position (kb) 549 550 551Strain fitness (log2 ratio) -2 -1 0 1 2 3at 549.348 kb on - strandat 549.348 kb on - strandat 549.348 kb on - strandat 549.348 kb on - strandat 549.348 kb on - strandat 549.348 kb on - strandat 549.348 kb on - strandat 549.348 kb on - strandat 549.348 kb on - strandat 549.348 kb on - strandat 549.406 kb on - strandat 549.406 kb on - strandat 549.406 kb on - strandat 550.621 kb on - strandat 550.632 kb on + strandat 550.633 kb on - strandat 550.633 kb on - strandat 550.633 kb on - strandat 550.633 kb on - strandat 550.677 kb on + strandat 550.678 kb on - strandat 550.827 kb on + strand, within EX31_RS19595at 550.827 kb on + strand, within EX31_RS19595at 550.827 kb on + strand, within EX31_RS19595at 550.827 kb on + strand, within EX31_RS19595at 550.827 kb on + strand, within EX31_RS19595at 550.827 kb on + strand, within EX31_RS19595at 550.827 kb on + strand, within EX31_RS19595at 550.828 kb on - strand, within EX31_RS19595at 550.828 kb on - strand, within EX31_RS19595at 550.828 kb on - strand, within EX31_RS19595at 550.828 kb on - strand, within EX31_RS19595at 550.828 kb on - strand, within EX31_RS19595at 550.828 kb on - strand, within EX31_RS19595at 550.828 kb on - strand, within EX31_RS19595at 550.828 kb on - strand, within EX31_RS19595at 550.831 kb on + strand, within EX31_RS19595at 550.831 kb on + strand, within EX31_RS19595at 550.832 kb on - strand, within EX31_RS19595at 550.832 kb on - strand, within EX31_RS19595at 550.832 kb on - strand, within EX31_RS19595at 550.832 kb on - strand, within EX31_RS19595at 550.832 kb on - strand, within EX31_RS19595at 550.832 kb on - strand, within EX31_RS19595at 550.832 kb on - strand, within EX31_RS19595at 550.832 kb on - strand, within EX31_RS19595at 550.832 kb on - strand, within EX31_RS19595at 550.835 kb on + strand, within EX31_RS19595at 550.835 kb on + strand, within EX31_RS19595at 550.836 kb on - strand, within EX31_RS19595at 550.836 kb on - strand, within EX31_RS19595at 550.836 kb on - strand, within EX31_RS19595at 550.836 kb on - strand, within EX31_RS19595at 550.836 kb on - strand, within EX31_RS19595at 550.836 kb on - strand, within EX31_RS19595at 550.836 kb on - strand, within EX31_RS19595at 550.836 kb on - strand, within EX31_RS19595at 550.836 kb on - strand, within EX31_RS19595at 550.867 kb on + strand, within EX31_RS19595at 550.867 kb on + strand, within EX31_RS19595at 550.867 kb on + strand, within EX31_RS19595at 550.868 kb on - strand, within EX31_RS19595at 550.868 kb on - strand, within EX31_RS19595at 550.868 kb on - strand, within EX31_RS19595at 550.869 kb on + strand, within EX31_RS19595at 550.869 kb on + strand, within EX31_RS19595at 550.870 kb on - strand, within EX31_RS19595at 550.870 kb on - strand, within EX31_RS19595at 550.870 kb on - strand, within EX31_RS19595at 550.870 kb on - strand, within EX31_RS19595at 550.870 kb on - strand, within EX31_RS19595at 550.870 kb on - strand, within EX31_RS19595at 550.870 kb on - strand, within EX31_RS19595at 550.870 kb on - strand, within EX31_RS19595at 550.870 kb on - strand, within EX31_RS19595at 550.888 kb on - strand, within EX31_RS19595at 550.894 kb on + strand, within EX31_RS19595at 550.894 kb on + strand, within EX31_RS19595at 550.894 kb on + strand, within EX31_RS19595at 550.894 kb on + strand, within EX31_RS19595at 550.894 kb on + strand, within EX31_RS19595at 550.895 kb on - strand, within EX31_RS19595at 550.895 kb on - strand, within EX31_RS19595at 550.895 kb on - strand, within EX31_RS19595at 550.895 kb on - strand, within EX31_RS19595at 550.895 kb on - strand, within EX31_RS19595at 550.895 kb on - strand, within EX31_RS19595at 550.895 kb on - strand, within EX31_RS19595at 550.895 kb on - strand, within EX31_RS19595at 550.895 kb on - strand, within EX31_RS19595at 550.984 kb on - strand, within EX31_RS19595at 550.990 kb on + strand, within EX31_RS19595at 550.990 kb on + strand, within EX31_RS19595at 550.990 kb on + strand, within EX31_RS19595at 550.990 kb on + strand, within EX31_RS19595at 550.991 kb on - strand, within EX31_RS19595at 550.991 kb on - strand, within EX31_RS19595at 550.991 kb on - strand, within EX31_RS19595at 551.038 kb on + strand, within EX31_RS19595at 551.061 kb on - strand, within EX31_RS19595at 551.071 kb on + strand, within EX31_RS19595at 551.076 kb on + strand, within EX31_RS19595at 551.076 kb on + strand, within EX31_RS19595at 551.076 kb on + strand, within EX31_RS19595at 551.076 kb on + strand, within EX31_RS19595at 551.076 kb on + strand, within EX31_RS19595at 551.076 kb on + strand, within EX31_RS19595at 551.077 kb on - strand, within EX31_RS19595at 551.077 kb on - strand, within EX31_RS19595at 551.077 kb on - strand, within EX31_RS19595at 551.077 kb on - strand, within EX31_RS19595at 551.077 kb on - strand, within EX31_RS19595at 551.077 kb on - strand, within EX31_RS19595at 551.077 kb on - strand, within EX31_RS19595at 551.077 kb on - strand, within EX31_RS19595at 551.077 kb on - strand, within EX31_RS19595at 551.077 kb on - strand, within EX31_RS19595at 551.077 kb on - strand, within EX31_RS19595at 551.077 kb on - strand, within EX31_RS19595at 551.077 kb on - strand, within EX31_RS19595at 551.077 kb on - strand, within EX31_RS19595at 551.077 kb on - strand, within EX31_RS19595at 551.077 kb on - strand, within EX31_RS19595at 551.077 kb on - strand, within EX31_RS19595at 551.077 kb on - strand, within EX31_RS19595at 551.175 kb on - strand, within EX31_RS19595at 551.175 kb on - strand, within EX31_RS19595at 551.183 kb on + strand, within EX31_RS19595at 551.183 kb on + strand, within EX31_RS19595at 551.183 kb on + strand, within EX31_RS19595at 551.184 kb on - strand, within EX31_RS19595at 551.272 kb on - strand, within EX31_RS19595at 551.306 kb on - strandat 551.369 kb on + strandat 551.369 kb on + strandat 551.382 kb on - strandat 551.382 kb on - strandat 551.406 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (N); RCH2 media; shaking
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549,348 - +0.2
549,348 - -0.5
549,348 - +0.2
549,348 - -0.1
549,348 - +0.5
549,348 - -0.4
549,348 - +0.7
549,348 - +2.8
549,348 - -0.7
549,348 - +0.2
549,406 - +0.2
549,406 - +1.5
549,406 - -0.5
550,621 - +1.4
550,632 + -0.5
550,633 - -1.1
550,633 - +0.2
550,633 - -0.2
550,633 - -0.1
550,677 + -0.7
550,678 - -0.8
550,827 + EX31_RS19595 0.23 +0.6
550,827 + EX31_RS19595 0.23 -1.2
550,827 + EX31_RS19595 0.23 -0.9
550,827 + EX31_RS19595 0.23 +0.1
550,827 + EX31_RS19595 0.23 +0.4
550,827 + EX31_RS19595 0.23 -0.3
550,827 + EX31_RS19595 0.23 +2.4
550,828 - EX31_RS19595 0.23 -0.9
550,828 - EX31_RS19595 0.23 +0.3
550,828 - EX31_RS19595 0.23 +0.7
550,828 - EX31_RS19595 0.23 -0.1
550,828 - EX31_RS19595 0.23 +0.7
550,828 - EX31_RS19595 0.23 +0.5
550,828 - EX31_RS19595 0.23 -0.8
550,828 - EX31_RS19595 0.23 -0.2
550,831 + EX31_RS19595 0.23 +0.1
550,831 + EX31_RS19595 0.23 +0.5
550,832 - EX31_RS19595 0.23 -0.2
550,832 - EX31_RS19595 0.23 -1.7
550,832 - EX31_RS19595 0.23 +0.7
550,832 - EX31_RS19595 0.23 -0.1
550,832 - EX31_RS19595 0.23 -0.2
550,832 - EX31_RS19595 0.23 -0.2
550,832 - EX31_RS19595 0.23 +0.7
550,832 - EX31_RS19595 0.23 +0.1
550,832 - EX31_RS19595 0.23 +0.5
550,835 + EX31_RS19595 0.24 +1.1
550,835 + EX31_RS19595 0.24 +0.3
550,836 - EX31_RS19595 0.24 -0.1
550,836 - EX31_RS19595 0.24 -0.0
550,836 - EX31_RS19595 0.24 +0.6
550,836 - EX31_RS19595 0.24 -0.7
550,836 - EX31_RS19595 0.24 +0.3
550,836 - EX31_RS19595 0.24 -0.2
550,836 - EX31_RS19595 0.24 +0.8
550,836 - EX31_RS19595 0.24 -1.1
550,836 - EX31_RS19595 0.24 +0.9
550,867 + EX31_RS19595 0.29 +0.3
550,867 + EX31_RS19595 0.29 +1.6
550,867 + EX31_RS19595 0.29 -0.1
550,868 - EX31_RS19595 0.29 +0.2
550,868 - EX31_RS19595 0.29 +0.3
550,868 - EX31_RS19595 0.29 +0.1
550,869 + EX31_RS19595 0.29 +0.4
550,869 + EX31_RS19595 0.29 +0.7
550,870 - EX31_RS19595 0.29 +0.1
550,870 - EX31_RS19595 0.29 -1.5
550,870 - EX31_RS19595 0.29 +0.5
550,870 - EX31_RS19595 0.29 -0.2
550,870 - EX31_RS19595 0.29 +0.1
550,870 - EX31_RS19595 0.29 +0.1
550,870 - EX31_RS19595 0.29 -0.0
550,870 - EX31_RS19595 0.29 +1.2
550,870 - EX31_RS19595 0.29 +0.7
550,888 - EX31_RS19595 0.32 +0.4
550,894 + EX31_RS19595 0.33 +0.1
550,894 + EX31_RS19595 0.33 -2.6
550,894 + EX31_RS19595 0.33 -1.1
550,894 + EX31_RS19595 0.33 +0.7
550,894 + EX31_RS19595 0.33 +0.6
550,895 - EX31_RS19595 0.33 -0.2
550,895 - EX31_RS19595 0.33 -0.1
550,895 - EX31_RS19595 0.33 -0.7
550,895 - EX31_RS19595 0.33 -1.6
550,895 - EX31_RS19595 0.33 +1.3
550,895 - EX31_RS19595 0.33 +0.2
550,895 - EX31_RS19595 0.33 +1.7
550,895 - EX31_RS19595 0.33 +0.3
550,895 - EX31_RS19595 0.33 +0.4
550,984 - EX31_RS19595 0.46 +0.4
550,990 + EX31_RS19595 0.47 +0.4
550,990 + EX31_RS19595 0.47 +0.8
550,990 + EX31_RS19595 0.47 -1.0
550,990 + EX31_RS19595 0.47 +0.8
550,991 - EX31_RS19595 0.47 +0.6
550,991 - EX31_RS19595 0.47 +0.3
550,991 - EX31_RS19595 0.47 +1.0
551,038 + EX31_RS19595 0.54 -1.6
551,061 - EX31_RS19595 0.58 -0.6
551,071 + EX31_RS19595 0.59 +1.2
551,076 + EX31_RS19595 0.60 -0.2
551,076 + EX31_RS19595 0.60 -1.4
551,076 + EX31_RS19595 0.60 -0.5
551,076 + EX31_RS19595 0.60 -0.5
551,076 + EX31_RS19595 0.60 +0.5
551,076 + EX31_RS19595 0.60 +0.5
551,077 - EX31_RS19595 0.60 -0.1
551,077 - EX31_RS19595 0.60 +0.3
551,077 - EX31_RS19595 0.60 -0.7
551,077 - EX31_RS19595 0.60 -1.1
551,077 - EX31_RS19595 0.60 +2.1
551,077 - EX31_RS19595 0.60 -0.2
551,077 - EX31_RS19595 0.60 +1.0
551,077 - EX31_RS19595 0.60 +0.6
551,077 - EX31_RS19595 0.60 +0.1
551,077 - EX31_RS19595 0.60 +1.6
551,077 - EX31_RS19595 0.60 -0.2
551,077 - EX31_RS19595 0.60 -0.6
551,077 - EX31_RS19595 0.60 -0.9
551,077 - EX31_RS19595 0.60 +0.8
551,077 - EX31_RS19595 0.60 -0.3
551,077 - EX31_RS19595 0.60 +0.4
551,077 - EX31_RS19595 0.60 -0.4
551,077 - EX31_RS19595 0.60 -0.1
551,175 - EX31_RS19595 0.75 +0.2
551,175 - EX31_RS19595 0.75 +0.8
551,183 + EX31_RS19595 0.76 -0.4
551,183 + EX31_RS19595 0.76 +1.7
551,183 + EX31_RS19595 0.76 +1.1
551,184 - EX31_RS19595 0.76 -0.1
551,272 - EX31_RS19595 0.89 +0.3
551,306 - +0.3
551,369 + +1.0
551,369 + -1.1
551,382 - +1.1
551,382 - +0.9
551,406 - -0.1

Or see this region's nucleotide sequence