Strain Fitness in Rahnella sp. WP5 around EX31_RS18045

Experiment: L-Serine (N); RCH2 media; shaking

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS18040 and EX31_RS18045 are separated by 109 nucleotidesEX31_RS18045 and EX31_RS18050 are separated by 210 nucleotides EX31_RS18040: EX31_RS18040 - porin OmpA, at 166,239 to 167,315 _RS18040 EX31_RS18045: EX31_RS18045 - macrodomain Ter protein MatP, at 167,425 to 167,886 _RS18045 EX31_RS18050: EX31_RS18050 - Lon protease family protein, at 168,097 to 169,863 _RS18050 Position (kb) 167 168Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 166.458 kb on + strand, within EX31_RS18040at 166.458 kb on + strand, within EX31_RS18040at 166.458 kb on + strand, within EX31_RS18040at 166.479 kb on + strand, within EX31_RS18040at 166.496 kb on + strand, within EX31_RS18040at 166.503 kb on + strand, within EX31_RS18040at 166.516 kb on + strand, within EX31_RS18040at 166.516 kb on + strand, within EX31_RS18040at 166.516 kb on + strand, within EX31_RS18040at 166.516 kb on + strand, within EX31_RS18040at 166.516 kb on + strand, within EX31_RS18040at 166.596 kb on + strand, within EX31_RS18040at 166.596 kb on + strand, within EX31_RS18040at 166.596 kb on + strand, within EX31_RS18040at 166.596 kb on + strand, within EX31_RS18040at 166.613 kb on + strand, within EX31_RS18040at 166.640 kb on + strand, within EX31_RS18040at 166.640 kb on + strand, within EX31_RS18040at 166.669 kb on + strand, within EX31_RS18040at 166.669 kb on + strand, within EX31_RS18040at 166.669 kb on + strand, within EX31_RS18040at 166.669 kb on + strand, within EX31_RS18040at 166.669 kb on + strand, within EX31_RS18040at 166.825 kb on + strand, within EX31_RS18040at 166.998 kb on + strand, within EX31_RS18040at 167.024 kb on + strand, within EX31_RS18040at 167.024 kb on + strand, within EX31_RS18040at 167.024 kb on + strand, within EX31_RS18040at 167.079 kb on + strand, within EX31_RS18040at 167.079 kb on + strand, within EX31_RS18040at 167.079 kb on + strand, within EX31_RS18040at 167.079 kb on + strand, within EX31_RS18040at 167.079 kb on + strand, within EX31_RS18040at 167.079 kb on + strand, within EX31_RS18040at 167.079 kb on + strand, within EX31_RS18040at 167.080 kb on - strand, within EX31_RS18040at 167.116 kb on + strand, within EX31_RS18040at 167.119 kb on + strand, within EX31_RS18040at 167.119 kb on + strand, within EX31_RS18040at 167.119 kb on + strand, within EX31_RS18040at 167.119 kb on + strand, within EX31_RS18040at 167.119 kb on + strand, within EX31_RS18040at 167.124 kb on + strand, within EX31_RS18040at 167.124 kb on + strand, within EX31_RS18040at 167.124 kb on + strand, within EX31_RS18040at 167.131 kb on + strand, within EX31_RS18040at 167.135 kb on + strand, within EX31_RS18040at 167.135 kb on + strand, within EX31_RS18040at 167.135 kb on + strand, within EX31_RS18040at 167.135 kb on + strand, within EX31_RS18040at 167.135 kb on + strand, within EX31_RS18040at 167.135 kb on + strand, within EX31_RS18040at 167.135 kb on + strand, within EX31_RS18040at 167.135 kb on + strand, within EX31_RS18040at 167.135 kb on + strand, within EX31_RS18040at 167.135 kb on + strand, within EX31_RS18040at 167.135 kb on + strand, within EX31_RS18040at 167.141 kb on + strand, within EX31_RS18040at 167.150 kb on + strand, within EX31_RS18040at 167.177 kb on + strand, within EX31_RS18040at 167.177 kb on + strand, within EX31_RS18040at 167.201 kb on + strand, within EX31_RS18040at 167.201 kb on + strand, within EX31_RS18040at 167.201 kb on + strand, within EX31_RS18040at 167.276 kb on + strandat 167.283 kb on + strandat 167.291 kb on + strandat 167.291 kb on + strandat 167.316 kb on + strandat 167.316 kb on + strandat 167.326 kb on + strandat 167.326 kb on + strandat 167.326 kb on + strandat 167.326 kb on + strandat 167.336 kb on + strandat 167.342 kb on + strandat 167.342 kb on + strandat 167.342 kb on + strandat 167.345 kb on + strandat 167.396 kb on - strandat 167.396 kb on - strandat 167.396 kb on - strandat 167.434 kb on - strandat 167.434 kb on - strandat 167.450 kb on - strandat 167.459 kb on - strandat 167.492 kb on + strand, within EX31_RS18045at 167.503 kb on - strand, within EX31_RS18045at 167.600 kb on - strand, within EX31_RS18045at 167.707 kb on - strand, within EX31_RS18045at 167.710 kb on - strand, within EX31_RS18045at 167.838 kb on - strand, within EX31_RS18045at 167.910 kb on - strandat 167.925 kb on - strandat 167.925 kb on - strandat 167.964 kb on + strandat 168.006 kb on - strandat 168.034 kb on + strandat 168.034 kb on + strandat 168.035 kb on - strandat 168.035 kb on - strandat 168.049 kb on - strandat 168.049 kb on - strandat 168.057 kb on - strandat 168.077 kb on + strandat 168.090 kb on + strandat 168.091 kb on - strandat 168.128 kb on + strandat 168.227 kb on + strandat 168.228 kb on - strandat 168.295 kb on + strand, within EX31_RS18050at 168.296 kb on - strand, within EX31_RS18050at 168.306 kb on + strand, within EX31_RS18050at 168.306 kb on + strand, within EX31_RS18050at 168.329 kb on + strand, within EX31_RS18050at 168.329 kb on + strand, within EX31_RS18050at 168.332 kb on + strand, within EX31_RS18050at 168.369 kb on + strand, within EX31_RS18050at 168.370 kb on - strand, within EX31_RS18050at 168.382 kb on - strand, within EX31_RS18050at 168.493 kb on + strand, within EX31_RS18050at 168.493 kb on + strand, within EX31_RS18050at 168.494 kb on - strand, within EX31_RS18050at 168.494 kb on - strand, within EX31_RS18050at 168.494 kb on - strand, within EX31_RS18050at 168.527 kb on + strand, within EX31_RS18050at 168.528 kb on - strand, within EX31_RS18050at 168.528 kb on - strand, within EX31_RS18050at 168.554 kb on + strand, within EX31_RS18050at 168.693 kb on + strand, within EX31_RS18050at 168.693 kb on + strand, within EX31_RS18050at 168.775 kb on + strand, within EX31_RS18050at 168.838 kb on + strand, within EX31_RS18050at 168.839 kb on - strand, within EX31_RS18050at 168.846 kb on + strand, within EX31_RS18050at 168.846 kb on + strand, within EX31_RS18050at 168.846 kb on + strand, within EX31_RS18050at 168.846 kb on + strand, within EX31_RS18050

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (N); RCH2 media; shaking
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166,458 + EX31_RS18040 0.20 -2.2
166,458 + EX31_RS18040 0.20 -0.4
166,458 + EX31_RS18040 0.20 -0.9
166,479 + EX31_RS18040 0.22 +0.8
166,496 + EX31_RS18040 0.24 -0.0
166,503 + EX31_RS18040 0.25 -0.9
166,516 + EX31_RS18040 0.26 -0.2
166,516 + EX31_RS18040 0.26 -2.0
166,516 + EX31_RS18040 0.26 +0.1
166,516 + EX31_RS18040 0.26 -0.9
166,516 + EX31_RS18040 0.26 -0.1
166,596 + EX31_RS18040 0.33 +1.1
166,596 + EX31_RS18040 0.33 -3.0
166,596 + EX31_RS18040 0.33 +0.4
166,596 + EX31_RS18040 0.33 +0.4
166,613 + EX31_RS18040 0.35 -0.7
166,640 + EX31_RS18040 0.37 -0.7
166,640 + EX31_RS18040 0.37 -1.4
166,669 + EX31_RS18040 0.40 +0.7
166,669 + EX31_RS18040 0.40 -0.6
166,669 + EX31_RS18040 0.40 +1.5
166,669 + EX31_RS18040 0.40 -0.5
166,669 + EX31_RS18040 0.40 +0.8
166,825 + EX31_RS18040 0.54 +0.3
166,998 + EX31_RS18040 0.70 -0.3
167,024 + EX31_RS18040 0.73 -1.9
167,024 + EX31_RS18040 0.73 -0.5
167,024 + EX31_RS18040 0.73 -0.9
167,079 + EX31_RS18040 0.78 -0.2
167,079 + EX31_RS18040 0.78 -0.5
167,079 + EX31_RS18040 0.78 -0.7
167,079 + EX31_RS18040 0.78 -1.6
167,079 + EX31_RS18040 0.78 -1.0
167,079 + EX31_RS18040 0.78 -2.4
167,079 + EX31_RS18040 0.78 -0.8
167,080 - EX31_RS18040 0.78 +0.8
167,116 + EX31_RS18040 0.81 +1.5
167,119 + EX31_RS18040 0.82 -1.6
167,119 + EX31_RS18040 0.82 -0.8
167,119 + EX31_RS18040 0.82 -1.1
167,119 + EX31_RS18040 0.82 -0.3
167,119 + EX31_RS18040 0.82 -0.2
167,124 + EX31_RS18040 0.82 -0.8
167,124 + EX31_RS18040 0.82 -2.8
167,124 + EX31_RS18040 0.82 -1.9
167,131 + EX31_RS18040 0.83 -1.5
167,135 + EX31_RS18040 0.83 +0.1
167,135 + EX31_RS18040 0.83 -0.6
167,135 + EX31_RS18040 0.83 -0.1
167,135 + EX31_RS18040 0.83 -0.9
167,135 + EX31_RS18040 0.83 -1.5
167,135 + EX31_RS18040 0.83 -0.1
167,135 + EX31_RS18040 0.83 +0.1
167,135 + EX31_RS18040 0.83 -1.0
167,135 + EX31_RS18040 0.83 -1.1
167,135 + EX31_RS18040 0.83 -1.1
167,135 + EX31_RS18040 0.83 -2.6
167,141 + EX31_RS18040 0.84 -0.9
167,150 + EX31_RS18040 0.85 -0.9
167,177 + EX31_RS18040 0.87 -0.7
167,177 + EX31_RS18040 0.87 -1.6
167,201 + EX31_RS18040 0.89 -0.1
167,201 + EX31_RS18040 0.89 -1.7
167,201 + EX31_RS18040 0.89 +0.6
167,276 + +0.2
167,283 + -0.3
167,291 + -0.7
167,291 + -0.7
167,316 + +0.0
167,316 + -0.8
167,326 + -1.3
167,326 + -0.5
167,326 + -0.2
167,326 + +0.2
167,336 + -1.3
167,342 + +0.4
167,342 + -0.4
167,342 + +0.0
167,345 + -0.6
167,396 - +1.4
167,396 - +0.1
167,396 - -0.4
167,434 - +0.0
167,434 - -1.0
167,450 - -1.0
167,459 - +0.7
167,492 + EX31_RS18045 0.15 -0.5
167,503 - EX31_RS18045 0.17 +1.8
167,600 - EX31_RS18045 0.38 -1.7
167,707 - EX31_RS18045 0.61 -0.7
167,710 - EX31_RS18045 0.62 -1.0
167,838 - EX31_RS18045 0.89 -1.5
167,910 - +0.4
167,925 - +0.3
167,925 - +0.5
167,964 + +1.0
168,006 - +1.1
168,034 + -0.0
168,034 + +0.8
168,035 - +0.3
168,035 - -0.4
168,049 - -1.1
168,049 - +1.4
168,057 - -0.1
168,077 + +1.0
168,090 + +1.1
168,091 - +1.2
168,128 + +1.4
168,227 + -0.3
168,228 - +0.8
168,295 + EX31_RS18050 0.11 +0.8
168,296 - EX31_RS18050 0.11 -0.2
168,306 + EX31_RS18050 0.12 +1.3
168,306 + EX31_RS18050 0.12 +0.6
168,329 + EX31_RS18050 0.13 +0.3
168,329 + EX31_RS18050 0.13 -0.2
168,332 + EX31_RS18050 0.13 -1.0
168,369 + EX31_RS18050 0.15 +0.2
168,370 - EX31_RS18050 0.15 -0.4
168,382 - EX31_RS18050 0.16 +1.6
168,493 + EX31_RS18050 0.22 -0.2
168,493 + EX31_RS18050 0.22 -0.3
168,494 - EX31_RS18050 0.22 +1.8
168,494 - EX31_RS18050 0.22 +0.3
168,494 - EX31_RS18050 0.22 -0.5
168,527 + EX31_RS18050 0.24 -0.6
168,528 - EX31_RS18050 0.24 +0.8
168,528 - EX31_RS18050 0.24 -1.5
168,554 + EX31_RS18050 0.26 -0.3
168,693 + EX31_RS18050 0.34 +0.4
168,693 + EX31_RS18050 0.34 +1.3
168,775 + EX31_RS18050 0.38 +0.1
168,838 + EX31_RS18050 0.42 +0.9
168,839 - EX31_RS18050 0.42 -0.7
168,846 + EX31_RS18050 0.42 +0.2
168,846 + EX31_RS18050 0.42 +0.3
168,846 + EX31_RS18050 0.42 -0.8
168,846 + EX31_RS18050 0.42 -0.3

Or see this region's nucleotide sequence