Strain Fitness in Rahnella sp. WP5 around EX31_RS17640

Experiment: L-Serine (N); RCH2 media; shaking

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS17630 and EX31_RS17635 are separated by 70 nucleotidesEX31_RS17635 and EX31_RS25530 are separated by 98 nucleotidesEX31_RS25530 and EX31_RS17640 are separated by 21 nucleotidesEX31_RS17640 and EX31_RS17645 are separated by 33 nucleotides EX31_RS17630: EX31_RS17630 - zinc-binding alcohol dehydrogenase family protein, at 77,506 to 78,441 _RS17630 EX31_RS17635: EX31_RS17635 - winged helix-turn-helix transcriptional regulator, at 78,512 to 78,994 _RS17635 EX31_RS25530: EX31_RS25530 - hypothetical protein, at 79,093 to 79,212 _RS25530 EX31_RS17640: EX31_RS17640 - TetR/AcrR family transcriptional regulator, at 79,234 to 79,470 _RS17640 EX31_RS17645: EX31_RS17645 - SDR family oxidoreductase, at 79,504 to 80,559 _RS17645 Position (kb) 79 80Strain fitness (log2 ratio) -1 0 1 2 3 4at 78.242 kb on + strand, within EX31_RS17630at 78.293 kb on + strand, within EX31_RS17630at 78.294 kb on - strand, within EX31_RS17630at 78.294 kb on - strand, within EX31_RS17630at 78.294 kb on - strand, within EX31_RS17630at 78.294 kb on - strand, within EX31_RS17630at 78.358 kb on + strandat 78.358 kb on + strandat 78.358 kb on + strandat 78.359 kb on - strandat 78.359 kb on - strandat 78.359 kb on - strandat 78.359 kb on - strandat 78.359 kb on - strandat 78.359 kb on - strandat 78.359 kb on - strandat 78.359 kb on - strandat 78.361 kb on - strandat 78.398 kb on + strandat 78.423 kb on + strandat 78.443 kb on - strandat 78.468 kb on + strandat 78.535 kb on + strandat 78.535 kb on + strandat 78.535 kb on + strandat 78.558 kb on + strandat 78.565 kb on + strand, within EX31_RS17635at 78.565 kb on + strand, within EX31_RS17635at 78.565 kb on + strand, within EX31_RS17635at 78.565 kb on + strand, within EX31_RS17635at 78.566 kb on - strand, within EX31_RS17635at 78.637 kb on + strand, within EX31_RS17635at 78.637 kb on + strand, within EX31_RS17635at 78.691 kb on + strand, within EX31_RS17635at 78.693 kb on + strand, within EX31_RS17635at 78.693 kb on + strand, within EX31_RS17635at 78.693 kb on + strand, within EX31_RS17635at 78.693 kb on + strand, within EX31_RS17635at 78.693 kb on + strand, within EX31_RS17635at 78.693 kb on + strand, within EX31_RS17635at 78.693 kb on + strand, within EX31_RS17635at 78.693 kb on + strand, within EX31_RS17635at 78.693 kb on + strand, within EX31_RS17635at 78.694 kb on - strand, within EX31_RS17635at 78.694 kb on - strand, within EX31_RS17635at 78.699 kb on + strand, within EX31_RS17635at 78.700 kb on - strand, within EX31_RS17635at 78.733 kb on + strand, within EX31_RS17635at 78.733 kb on + strand, within EX31_RS17635at 78.734 kb on - strand, within EX31_RS17635at 78.753 kb on + strand, within EX31_RS17635at 78.757 kb on + strand, within EX31_RS17635at 78.757 kb on + strand, within EX31_RS17635at 78.757 kb on + strand, within EX31_RS17635at 78.884 kb on + strand, within EX31_RS17635at 78.884 kb on + strand, within EX31_RS17635at 78.887 kb on - strand, within EX31_RS17635at 78.901 kb on + strand, within EX31_RS17635at 79.003 kb on + strandat 79.003 kb on + strandat 79.003 kb on + strandat 79.003 kb on + strandat 79.004 kb on - strandat 79.004 kb on - strandat 79.004 kb on - strandat 79.004 kb on - strandat 79.004 kb on - strandat 79.009 kb on + strandat 79.009 kb on + strandat 79.010 kb on - strandat 79.035 kb on + strandat 79.036 kb on - strandat 79.046 kb on + strandat 79.047 kb on - strandat 79.056 kb on + strandat 79.056 kb on + strandat 79.079 kb on - strandat 79.079 kb on - strandat 79.079 kb on - strandat 79.116 kb on - strand, within EX31_RS25530at 79.125 kb on + strand, within EX31_RS25530at 79.125 kb on + strand, within EX31_RS25530at 79.126 kb on - strand, within EX31_RS25530at 79.126 kb on - strand, within EX31_RS25530at 79.126 kb on - strand, within EX31_RS25530at 79.126 kb on - strand, within EX31_RS25530at 79.212 kb on - strandat 79.232 kb on + strandat 79.233 kb on - strandat 79.350 kb on - strand, within EX31_RS17640at 79.404 kb on - strand, within EX31_RS17640at 79.404 kb on - strand, within EX31_RS17640at 79.404 kb on - strand, within EX31_RS17640at 79.446 kb on - strand, within EX31_RS17640at 79.476 kb on - strandat 79.476 kb on - strandat 79.485 kb on + strandat 79.485 kb on + strandat 79.486 kb on - strandat 79.486 kb on - strandat 79.486 kb on - strandat 79.579 kb on - strandat 79.622 kb on + strand, within EX31_RS17645at 79.623 kb on - strand, within EX31_RS17645at 79.724 kb on + strand, within EX31_RS17645at 79.724 kb on + strand, within EX31_RS17645at 79.725 kb on - strand, within EX31_RS17645at 79.725 kb on - strand, within EX31_RS17645at 79.725 kb on - strand, within EX31_RS17645at 79.930 kb on - strand, within EX31_RS17645at 79.930 kb on - strand, within EX31_RS17645at 79.930 kb on - strand, within EX31_RS17645at 79.930 kb on - strand, within EX31_RS17645at 79.930 kb on - strand, within EX31_RS17645at 79.966 kb on + strand, within EX31_RS17645at 79.980 kb on + strand, within EX31_RS17645at 79.995 kb on - strand, within EX31_RS17645at 80.199 kb on - strand, within EX31_RS17645at 80.207 kb on + strand, within EX31_RS17645at 80.224 kb on + strand, within EX31_RS17645at 80.224 kb on + strand, within EX31_RS17645at 80.225 kb on - strand, within EX31_RS17645at 80.407 kb on + strand, within EX31_RS17645at 80.418 kb on + strand, within EX31_RS17645at 80.418 kb on + strand, within EX31_RS17645at 80.419 kb on - strand, within EX31_RS17645at 80.419 kb on - strand, within EX31_RS17645at 80.419 kb on - strand, within EX31_RS17645at 80.435 kb on - strand, within EX31_RS17645at 80.435 kb on - strand, within EX31_RS17645at 80.435 kb on - strand, within EX31_RS17645

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (N); RCH2 media; shaking
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78,242 + EX31_RS17630 0.79 -0.4
78,293 + EX31_RS17630 0.84 +0.6
78,294 - EX31_RS17630 0.84 +1.0
78,294 - EX31_RS17630 0.84 +0.6
78,294 - EX31_RS17630 0.84 -0.2
78,294 - EX31_RS17630 0.84 +0.6
78,358 + -0.6
78,358 + +1.1
78,358 + -0.7
78,359 - -0.5
78,359 - -0.6
78,359 - +0.5
78,359 - +0.8
78,359 - +0.7
78,359 - -1.4
78,359 - +1.5
78,359 - +1.0
78,361 - +1.8
78,398 + -0.3
78,423 + +2.0
78,443 - +0.7
78,468 + -1.4
78,535 + -0.4
78,535 + +1.8
78,535 + +1.4
78,558 + +0.4
78,565 + EX31_RS17635 0.11 -0.6
78,565 + EX31_RS17635 0.11 -1.5
78,565 + EX31_RS17635 0.11 +0.5
78,565 + EX31_RS17635 0.11 -0.8
78,566 - EX31_RS17635 0.11 +1.8
78,637 + EX31_RS17635 0.26 +0.6
78,637 + EX31_RS17635 0.26 +1.1
78,691 + EX31_RS17635 0.37 -0.2
78,693 + EX31_RS17635 0.37 +1.1
78,693 + EX31_RS17635 0.37 -0.3
78,693 + EX31_RS17635 0.37 +0.2
78,693 + EX31_RS17635 0.37 -0.6
78,693 + EX31_RS17635 0.37 +0.6
78,693 + EX31_RS17635 0.37 -0.8
78,693 + EX31_RS17635 0.37 -0.5
78,693 + EX31_RS17635 0.37 -0.5
78,693 + EX31_RS17635 0.37 -0.7
78,694 - EX31_RS17635 0.38 -0.6
78,694 - EX31_RS17635 0.38 +1.4
78,699 + EX31_RS17635 0.39 +0.8
78,700 - EX31_RS17635 0.39 +0.2
78,733 + EX31_RS17635 0.46 +0.2
78,733 + EX31_RS17635 0.46 -1.2
78,734 - EX31_RS17635 0.46 -0.3
78,753 + EX31_RS17635 0.50 -0.5
78,757 + EX31_RS17635 0.51 -1.2
78,757 + EX31_RS17635 0.51 +1.6
78,757 + EX31_RS17635 0.51 -1.2
78,884 + EX31_RS17635 0.77 -0.8
78,884 + EX31_RS17635 0.77 +0.2
78,887 - EX31_RS17635 0.78 +1.1
78,901 + EX31_RS17635 0.81 +0.6
79,003 + +0.6
79,003 + +0.1
79,003 + +1.2
79,003 + +0.4
79,004 - +1.2
79,004 - -0.8
79,004 - -0.4
79,004 - +0.4
79,004 - +1.1
79,009 + -1.5
79,009 + -0.8
79,010 - +0.4
79,035 + +0.8
79,036 - -1.5
79,046 + -0.3
79,047 - -0.9
79,056 + -0.4
79,056 + +1.2
79,079 - -0.9
79,079 - -0.1
79,079 - +0.1
79,116 - EX31_RS25530 0.19 +0.3
79,125 + EX31_RS25530 0.27 +1.8
79,125 + EX31_RS25530 0.27 +0.4
79,126 - EX31_RS25530 0.28 -0.1
79,126 - EX31_RS25530 0.28 +1.2
79,126 - EX31_RS25530 0.28 -0.2
79,126 - EX31_RS25530 0.28 -0.3
79,212 - +0.2
79,232 + -0.3
79,233 - +0.2
79,350 - EX31_RS17640 0.49 +0.6
79,404 - EX31_RS17640 0.72 -1.0
79,404 - EX31_RS17640 0.72 -0.2
79,404 - EX31_RS17640 0.72 -1.1
79,446 - EX31_RS17640 0.89 -1.5
79,476 - +1.1
79,476 - +0.6
79,485 + +4.0
79,485 + -0.3
79,486 - +1.4
79,486 - +1.4
79,486 - +0.8
79,579 - +0.4
79,622 + EX31_RS17645 0.11 +1.8
79,623 - EX31_RS17645 0.11 -0.5
79,724 + EX31_RS17645 0.21 +0.8
79,724 + EX31_RS17645 0.21 +0.4
79,725 - EX31_RS17645 0.21 -0.4
79,725 - EX31_RS17645 0.21 -0.8
79,725 - EX31_RS17645 0.21 +1.6
79,930 - EX31_RS17645 0.40 -0.7
79,930 - EX31_RS17645 0.40 -0.1
79,930 - EX31_RS17645 0.40 -0.3
79,930 - EX31_RS17645 0.40 +1.0
79,930 - EX31_RS17645 0.40 -0.5
79,966 + EX31_RS17645 0.44 -0.6
79,980 + EX31_RS17645 0.45 +0.2
79,995 - EX31_RS17645 0.46 +0.0
80,199 - EX31_RS17645 0.66 +0.2
80,207 + EX31_RS17645 0.67 +1.3
80,224 + EX31_RS17645 0.68 +0.0
80,224 + EX31_RS17645 0.68 +2.4
80,225 - EX31_RS17645 0.68 +0.5
80,407 + EX31_RS17645 0.86 -0.8
80,418 + EX31_RS17645 0.87 -0.8
80,418 + EX31_RS17645 0.87 +1.8
80,419 - EX31_RS17645 0.87 +0.0
80,419 - EX31_RS17645 0.87 -1.0
80,419 - EX31_RS17645 0.87 +0.1
80,435 - EX31_RS17645 0.88 +0.8
80,435 - EX31_RS17645 0.88 +1.0
80,435 - EX31_RS17645 0.88 -0.0

Or see this region's nucleotide sequence