Strain Fitness in Rahnella sp. WP5 around EX31_RS14045

Experiment: L-Serine (N); RCH2 media; shaking

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS14040 and EX31_RS14045 are separated by 778 nucleotidesEX31_RS14045 and EX31_RS14050 are separated by 4 nucleotides EX31_RS14040: EX31_RS14040 - DUF2502 domain-containing protein, at 72,310 to 72,708 _RS14040 EX31_RS14045: EX31_RS14045 - integration host factor subunit alpha, at 73,487 to 73,783 _RS14045 EX31_RS14050: EX31_RS14050 - phenylalanine--tRNA ligase subunit beta, at 73,788 to 76,175 _RS14050 Position (kb) 73 74Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 72.508 kb on - strand, within EX31_RS14040at 72.625 kb on + strand, within EX31_RS14040at 72.626 kb on - strand, within EX31_RS14040at 72.640 kb on - strand, within EX31_RS14040at 72.691 kb on + strandat 72.692 kb on - strandat 72.711 kb on + strandat 72.716 kb on - strandat 72.847 kb on - strandat 72.974 kb on + strandat 73.120 kb on + strandat 73.120 kb on + strandat 73.210 kb on + strandat 73.361 kb on - strandat 73.387 kb on - strandat 73.411 kb on - strandat 73.489 kb on - strandat 73.489 kb on - strandat 73.489 kb on - strandat 73.512 kb on - strandat 73.784 kb on - strandat 73.784 kb on - strandat 73.784 kb on - strandat 73.784 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (N); RCH2 media; shaking
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72,508 - EX31_RS14040 0.50 +0.1
72,625 + EX31_RS14040 0.79 +0.3
72,626 - EX31_RS14040 0.79 -0.3
72,640 - EX31_RS14040 0.83 -0.1
72,691 + +0.9
72,692 - +1.7
72,711 + -0.9
72,716 - +1.0
72,847 - +0.6
72,974 + -0.4
73,120 + -0.7
73,120 + +4.0
73,210 + +0.7
73,361 - -0.9
73,387 - +0.4
73,411 - +1.7
73,489 - +0.7
73,489 - -0.8
73,489 - +0.7
73,512 - -0.2
73,784 - -0.4
73,784 - -2.2
73,784 - -1.3
73,784 - -1.7

Or see this region's nucleotide sequence