Strain Fitness in Rahnella sp. WP5 around EX31_RS11735

Experiment: L-Serine (N); RCH2 media; shaking

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS11725 and EX31_RS11730 are separated by 96 nucleotidesEX31_RS11730 and EX31_RS11735 are separated by 292 nucleotidesEX31_RS11735 and EX31_RS11740 are separated by 364 nucleotides EX31_RS11725: EX31_RS11725 - 23S ribosomal RNA, at 1 to 80 _RS11725 EX31_RS11730: EX31_RS11730 - 5S ribosomal RNA, at 177 to 292 _RS11730 EX31_RS11735: EX31_RS11735 - homoserine O-succinyltransferase, at 585 to 1,514 _RS11735 EX31_RS11740: EX31_RS11740 - malate synthase A, at 1,879 to 3,477 _RS11740 Position (kb) 0 1 2Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 0.323 kb on + strandat 0.367 kb on - strandat 0.367 kb on - strandat 0.367 kb on - strandat 0.367 kb on - strandat 0.367 kb on - strandat 0.367 kb on - strandat 0.399 kb on + strandat 0.399 kb on + strandat 0.399 kb on + strandat 0.400 kb on - strandat 0.400 kb on - strandat 0.464 kb on + strandat 0.467 kb on + strandat 0.472 kb on + strandat 0.473 kb on - strandat 0.473 kb on - strandat 0.543 kb on + strandat 0.569 kb on + strandat 0.611 kb on - strandat 0.692 kb on + strand, within EX31_RS11735at 0.693 kb on - strand, within EX31_RS11735at 0.693 kb on - strand, within EX31_RS11735at 0.693 kb on - strand, within EX31_RS11735at 0.693 kb on - strand, within EX31_RS11735at 0.778 kb on + strand, within EX31_RS11735at 0.778 kb on + strand, within EX31_RS11735at 0.779 kb on - strand, within EX31_RS11735at 0.779 kb on - strand, within EX31_RS11735at 0.779 kb on - strand, within EX31_RS11735at 0.779 kb on - strand, within EX31_RS11735at 0.779 kb on - strand, within EX31_RS11735at 0.815 kb on + strand, within EX31_RS11735at 0.815 kb on + strand, within EX31_RS11735at 0.849 kb on + strand, within EX31_RS11735at 0.882 kb on + strand, within EX31_RS11735at 0.882 kb on + strand, within EX31_RS11735at 0.883 kb on - strand, within EX31_RS11735at 0.883 kb on - strand, within EX31_RS11735at 0.883 kb on - strand, within EX31_RS11735at 0.883 kb on - strand, within EX31_RS11735at 0.883 kb on - strand, within EX31_RS11735at 0.883 kb on - strand, within EX31_RS11735at 0.883 kb on - strand, within EX31_RS11735at 0.883 kb on - strand, within EX31_RS11735at 0.883 kb on - strand, within EX31_RS11735at 0.883 kb on - strand, within EX31_RS11735at 0.883 kb on - strand, within EX31_RS11735at 0.914 kb on - strand, within EX31_RS11735at 0.937 kb on + strand, within EX31_RS11735at 0.937 kb on + strand, within EX31_RS11735at 0.937 kb on + strand, within EX31_RS11735at 0.937 kb on + strand, within EX31_RS11735at 0.937 kb on + strand, within EX31_RS11735at 0.938 kb on - strand, within EX31_RS11735at 0.938 kb on - strand, within EX31_RS11735at 0.988 kb on + strand, within EX31_RS11735at 0.989 kb on - strand, within EX31_RS11735at 0.989 kb on - strand, within EX31_RS11735at 0.989 kb on - strand, within EX31_RS11735at 1.041 kb on + strand, within EX31_RS11735at 1.297 kb on - strand, within EX31_RS11735at 1.324 kb on - strand, within EX31_RS11735at 1.324 kb on - strand, within EX31_RS11735at 1.365 kb on + strand, within EX31_RS11735at 1.366 kb on - strand, within EX31_RS11735at 1.366 kb on - strand, within EX31_RS11735at 1.371 kb on + strand, within EX31_RS11735at 1.371 kb on + strand, within EX31_RS11735at 1.371 kb on + strand, within EX31_RS11735at 1.372 kb on - strand, within EX31_RS11735at 1.372 kb on - strand, within EX31_RS11735at 1.372 kb on - strand, within EX31_RS11735at 1.372 kb on - strand, within EX31_RS11735at 1.385 kb on + strand, within EX31_RS11735at 1.442 kb on + strandat 1.443 kb on - strandat 1.455 kb on + strandat 1.456 kb on - strandat 1.456 kb on - strandat 1.456 kb on - strandat 1.458 kb on + strandat 1.458 kb on + strandat 1.458 kb on + strandat 1.458 kb on + strandat 1.458 kb on + strandat 1.458 kb on + strandat 1.458 kb on + strandat 1.459 kb on - strandat 1.465 kb on - strandat 1.513 kb on - strandat 1.516 kb on + strandat 1.517 kb on - strandat 1.517 kb on - strandat 1.796 kb on - strandat 1.819 kb on - strandat 1.821 kb on + strandat 1.821 kb on + strandat 1.821 kb on + strandat 1.822 kb on - strandat 1.822 kb on - strandat 1.822 kb on - strandat 1.822 kb on - strandat 1.862 kb on - strandat 1.874 kb on - strandat 1.894 kb on - strandat 1.894 kb on - strandat 1.894 kb on - strandat 1.894 kb on - strandat 1.894 kb on - strandat 1.894 kb on - strandat 1.914 kb on + strandat 1.914 kb on + strandat 1.915 kb on - strandat 1.995 kb on + strandat 2.015 kb on + strandat 2.207 kb on + strand, within EX31_RS11740at 2.207 kb on + strand, within EX31_RS11740at 2.207 kb on + strand, within EX31_RS11740at 2.207 kb on + strand, within EX31_RS11740at 2.207 kb on + strand, within EX31_RS11740at 2.207 kb on + strand, within EX31_RS11740at 2.208 kb on - strand, within EX31_RS11740at 2.208 kb on - strand, within EX31_RS11740at 2.208 kb on - strand, within EX31_RS11740at 2.208 kb on - strand, within EX31_RS11740at 2.218 kb on - strand, within EX31_RS11740at 2.262 kb on + strand, within EX31_RS11740at 2.264 kb on + strand, within EX31_RS11740at 2.264 kb on + strand, within EX31_RS11740at 2.264 kb on + strand, within EX31_RS11740at 2.264 kb on + strand, within EX31_RS11740at 2.265 kb on - strand, within EX31_RS11740at 2.265 kb on - strand, within EX31_RS11740at 2.277 kb on + strand, within EX31_RS11740at 2.278 kb on - strand, within EX31_RS11740at 2.278 kb on - strand, within EX31_RS11740at 2.282 kb on + strand, within EX31_RS11740at 2.304 kb on + strand, within EX31_RS11740at 2.305 kb on - strand, within EX31_RS11740at 2.305 kb on - strand, within EX31_RS11740at 2.311 kb on + strand, within EX31_RS11740at 2.311 kb on + strand, within EX31_RS11740at 2.311 kb on + strand, within EX31_RS11740at 2.311 kb on + strand, within EX31_RS11740at 2.312 kb on - strand, within EX31_RS11740at 2.312 kb on - strand, within EX31_RS11740at 2.375 kb on + strand, within EX31_RS11740at 2.375 kb on + strand, within EX31_RS11740at 2.375 kb on + strand, within EX31_RS11740at 2.375 kb on + strand, within EX31_RS11740at 2.375 kb on + strand, within EX31_RS11740at 2.375 kb on + strand, within EX31_RS11740at 2.375 kb on + strand, within EX31_RS11740at 2.375 kb on + strand, within EX31_RS11740at 2.376 kb on - strand, within EX31_RS11740at 2.376 kb on - strand, within EX31_RS11740at 2.376 kb on - strand, within EX31_RS11740at 2.376 kb on - strand, within EX31_RS11740at 2.376 kb on - strand, within EX31_RS11740at 2.390 kb on + strand, within EX31_RS11740at 2.391 kb on - strand, within EX31_RS11740at 2.424 kb on + strand, within EX31_RS11740at 2.424 kb on + strand, within EX31_RS11740at 2.425 kb on - strand, within EX31_RS11740at 2.425 kb on - strand, within EX31_RS11740at 2.466 kb on + strand, within EX31_RS11740at 2.467 kb on - strand, within EX31_RS11740at 2.467 kb on - strand, within EX31_RS11740at 2.467 kb on - strand, within EX31_RS11740at 2.471 kb on - strand, within EX31_RS11740at 2.471 kb on - strand, within EX31_RS11740at 2.471 kb on - strand, within EX31_RS11740at 2.509 kb on + strand, within EX31_RS11740at 2.510 kb on - strand, within EX31_RS11740

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (N); RCH2 media; shaking
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323 + -1.1
367 - +0.3
367 - -0.2
367 - +0.7
367 - +0.3
367 - +0.4
367 - +0.5
399 + +0.5
399 + -0.5
399 + +0.7
400 - -2.0
400 - +0.7
464 + -0.2
467 + +0.6
472 + +0.9
473 - -1.5
473 - +0.2
543 + -1.4
569 + +0.5
611 - -2.4
692 + EX31_RS11735 0.12 -0.3
693 - EX31_RS11735 0.12 -2.3
693 - EX31_RS11735 0.12 -0.9
693 - EX31_RS11735 0.12 -2.0
693 - EX31_RS11735 0.12 -0.5
778 + EX31_RS11735 0.21 -2.7
778 + EX31_RS11735 0.21 -0.6
779 - EX31_RS11735 0.21 -2.0
779 - EX31_RS11735 0.21 -1.8
779 - EX31_RS11735 0.21 -1.1
779 - EX31_RS11735 0.21 +0.5
779 - EX31_RS11735 0.21 -2.7
815 + EX31_RS11735 0.25 -1.8
815 + EX31_RS11735 0.25 -1.5
849 + EX31_RS11735 0.28 -2.2
882 + EX31_RS11735 0.32 -1.4
882 + EX31_RS11735 0.32 -1.6
883 - EX31_RS11735 0.32 -2.7
883 - EX31_RS11735 0.32 -1.2
883 - EX31_RS11735 0.32 -2.3
883 - EX31_RS11735 0.32 -2.3
883 - EX31_RS11735 0.32 -1.7
883 - EX31_RS11735 0.32 -2.2
883 - EX31_RS11735 0.32 -1.2
883 - EX31_RS11735 0.32 -2.9
883 - EX31_RS11735 0.32 -2.1
883 - EX31_RS11735 0.32 -2.1
883 - EX31_RS11735 0.32 -2.1
914 - EX31_RS11735 0.35 -2.4
937 + EX31_RS11735 0.38 -2.7
937 + EX31_RS11735 0.38 -2.5
937 + EX31_RS11735 0.38 -0.8
937 + EX31_RS11735 0.38 -2.1
937 + EX31_RS11735 0.38 -0.4
938 - EX31_RS11735 0.38 -1.5
938 - EX31_RS11735 0.38 -0.5
988 + EX31_RS11735 0.43 -1.2
989 - EX31_RS11735 0.43 -2.4
989 - EX31_RS11735 0.43 -2.2
989 - EX31_RS11735 0.43 -1.4
1,041 + EX31_RS11735 0.49 +0.5
1,297 - EX31_RS11735 0.77 -1.7
1,324 - EX31_RS11735 0.79 -2.0
1,324 - EX31_RS11735 0.79 +1.1
1,365 + EX31_RS11735 0.84 -1.6
1,366 - EX31_RS11735 0.84 -1.1
1,366 - EX31_RS11735 0.84 -3.0
1,371 + EX31_RS11735 0.85 -1.9
1,371 + EX31_RS11735 0.85 -1.8
1,371 + EX31_RS11735 0.85 -1.5
1,372 - EX31_RS11735 0.85 +4.1
1,372 - EX31_RS11735 0.85 -1.6
1,372 - EX31_RS11735 0.85 -2.1
1,372 - EX31_RS11735 0.85 -2.6
1,385 + EX31_RS11735 0.86 -1.5
1,442 + +0.1
1,443 - -2.2
1,455 + -1.0
1,456 - +0.0
1,456 - -3.1
1,456 - -2.7
1,458 + -2.3
1,458 + -2.3
1,458 + -1.7
1,458 + +0.0
1,458 + -3.1
1,458 + -1.6
1,458 + -2.5
1,459 - -1.5
1,465 - +0.1
1,513 - +0.8
1,516 + +0.3
1,517 - +0.1
1,517 - +0.2
1,796 - -0.1
1,819 - +0.3
1,821 + +1.0
1,821 + +1.4
1,821 + +1.2
1,822 - -0.3
1,822 - +0.1
1,822 - -0.7
1,822 - +0.5
1,862 - +0.6
1,874 - +0.5
1,894 - -0.6
1,894 - +0.7
1,894 - -0.0
1,894 - +0.1
1,894 - +0.6
1,894 - +1.0
1,914 + +0.1
1,914 + -1.4
1,915 - -1.4
1,995 + -1.1
2,015 + +0.2
2,207 + EX31_RS11740 0.21 +0.6
2,207 + EX31_RS11740 0.21 +1.0
2,207 + EX31_RS11740 0.21 +1.5
2,207 + EX31_RS11740 0.21 -0.3
2,207 + EX31_RS11740 0.21 +1.1
2,207 + EX31_RS11740 0.21 +0.6
2,208 - EX31_RS11740 0.21 +0.4
2,208 - EX31_RS11740 0.21 -0.1
2,208 - EX31_RS11740 0.21 -1.1
2,208 - EX31_RS11740 0.21 +0.2
2,218 - EX31_RS11740 0.21 -1.4
2,262 + EX31_RS11740 0.24 +0.8
2,264 + EX31_RS11740 0.24 +0.8
2,264 + EX31_RS11740 0.24 -0.2
2,264 + EX31_RS11740 0.24 -1.4
2,264 + EX31_RS11740 0.24 -0.7
2,265 - EX31_RS11740 0.24 +1.0
2,265 - EX31_RS11740 0.24 -0.9
2,277 + EX31_RS11740 0.25 -0.9
2,278 - EX31_RS11740 0.25 -0.1
2,278 - EX31_RS11740 0.25 +2.5
2,282 + EX31_RS11740 0.25 +0.1
2,304 + EX31_RS11740 0.27 -0.0
2,305 - EX31_RS11740 0.27 +0.0
2,305 - EX31_RS11740 0.27 -1.5
2,311 + EX31_RS11740 0.27 +0.4
2,311 + EX31_RS11740 0.27 +0.5
2,311 + EX31_RS11740 0.27 +0.4
2,311 + EX31_RS11740 0.27 +1.5
2,312 - EX31_RS11740 0.27 -0.3
2,312 - EX31_RS11740 0.27 -0.4
2,375 + EX31_RS11740 0.31 -1.9
2,375 + EX31_RS11740 0.31 -0.5
2,375 + EX31_RS11740 0.31 +0.4
2,375 + EX31_RS11740 0.31 +1.8
2,375 + EX31_RS11740 0.31 +0.4
2,375 + EX31_RS11740 0.31 -0.5
2,375 + EX31_RS11740 0.31 -0.8
2,375 + EX31_RS11740 0.31 -0.1
2,376 - EX31_RS11740 0.31 -0.5
2,376 - EX31_RS11740 0.31 +0.2
2,376 - EX31_RS11740 0.31 -0.8
2,376 - EX31_RS11740 0.31 -1.7
2,376 - EX31_RS11740 0.31 +0.3
2,390 + EX31_RS11740 0.32 +0.4
2,391 - EX31_RS11740 0.32 +0.5
2,424 + EX31_RS11740 0.34 +0.1
2,424 + EX31_RS11740 0.34 -0.2
2,425 - EX31_RS11740 0.34 +0.7
2,425 - EX31_RS11740 0.34 -0.3
2,466 + EX31_RS11740 0.37 -0.9
2,467 - EX31_RS11740 0.37 +0.2
2,467 - EX31_RS11740 0.37 +1.0
2,467 - EX31_RS11740 0.37 -1.1
2,471 - EX31_RS11740 0.37 -0.0
2,471 - EX31_RS11740 0.37 -0.7
2,471 - EX31_RS11740 0.37 -0.8
2,509 + EX31_RS11740 0.39 +0.1
2,510 - EX31_RS11740 0.39 +0.4

Or see this region's nucleotide sequence